Phytochrome diversification in cyanobacteria and eukaryotic algae

Rockwell, Nathan C.; Lagarias, J. Clark

doi:10.1016/j.pbi.2017.04.003

Title: Phytochrome diversification in cyanobacteria and eukaryotic algae

Authors:: Rockwell, Nathan C.; Lagarias, J. Clark

Publication Date:: Thu Jun 01 00:00:00 EDT 2017

Sponsoring Org.:: USDOE Office of Science (SC), Basic Energy Sciences (BES)

OSTI Identifier:: 1417115

Grant/Contract Number:: FG02-09ER16117; SC0002395

Resource Type:: Publisher's Accepted Manuscript

Journal Name:: Current Opinion in Plant Biology

Additional Journal Information:: Journal Name: Current Opinion in Plant Biology Journal Volume: 37 Journal Issue: C; Journal ID: ISSN 1369-5266

Publisher:: Elsevier

Country of Publication:: United Kingdom

Language:: English

Citation Formats


                    Rockwell, Nathan C., and Lagarias, J. Clark. Phytochrome diversification in cyanobacteria and eukaryotic algae.  United Kingdom: N. p., 2017. 
Web.  doi:10.1016/j.pbi.2017.04.003.

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                    Rockwell, Nathan C., & Lagarias, J. Clark. Phytochrome diversification in cyanobacteria and eukaryotic algae.  United Kingdom.  https://doi.org/10.1016/j.pbi.2017.04.003

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                    Rockwell, Nathan C., and Lagarias, J. Clark. Thu .  
"Phytochrome diversification in cyanobacteria and eukaryotic algae".  United Kingdom.  https://doi.org/10.1016/j.pbi.2017.04.003.

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@article{osti_1417115,

  title        = {Phytochrome diversification in cyanobacteria and eukaryotic algae},

  author       = {Rockwell, Nathan C. and Lagarias, J. Clark},

  abstractNote = {},

  doi          = {10.1016/j.pbi.2017.04.003},

  journal      = {Current Opinion in Plant Biology},

  number       = C,

  volume       = 37,

  place        = {United Kingdom},

  year         = {Thu Jun 01 00:00:00 EDT 2017},

  month        = {Thu Jun 01 00:00:00 EDT 2017}

}

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https://doi.org/10.1016/j.pbi.2017.04.003

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Title: Phytochrome diversification in cyanobacteria and eukaryotic algae

Citation Formats

Phytochrome diversity in green plants and the origin of canonical plant phytochromes journal, July 2015

Far-red light photoacclimation (FaRLiP) in Synechococcus sp. PCC 7335: I. Regulation of FaRLiP gene expression journal, September 2016

The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry journal, January 2015

Marine algae and land plants share conserved phytochrome signaling systems journal, September 2014

Holophytochrome-Interacting Proteins in Physcomitrella: Putative Actors in Phytochrome Cytoplasmic Signaling journal, May 2016

Data access for the 1,000 Plants (1KP) project journal, October 2014

Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem journal, August 2003

Comparison of transcriptome under red and blue light culture of Saccharina japonica (Phaeophyceae) journal, January 2013

Adaptive and acclimative responses of cyanobacteria to far-red light: Responses of cyanobacteria to far-red light journal, August 2015

Eukaryotic algal phytochromes span the visible spectrum journal, February 2014

Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome journal, October 2011

Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome journal, June 2014

Paulinella longichromatophora sp. nov., a New Marine Photosynthetic Testate Amoeba Containing a Chromatophore journal, February 2016

Light-dependent chlorophyll f synthase is a highly divergent paralog of PsbA of photosystem II journal, July 2016

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing journal, June 2014

Redesigning photosynthesis to sustainably meet global food and bioenergy demand journal, June 2015

Structural photoactivation of a full-length bacterial phytochrome journal, August 2016

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions journal, March 2016

RfpA, RfpB, and RfpC are the Master Control Elements of Far-Red Light Photoacclimation (FaRLiP) journal, November 2015

Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean journal, March 2016

From The Cover: A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution journal, September 2005

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome journal, November 2005

Streptophyte phytochromes exhibit an N-terminus of cyanobacterial origin and a C-terminus of proteobacterial origin journal, April 2015

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light journal, August 2014

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants journal, February 2012

Phytochrome signaling mechanisms and the control of plant development journal, November 2011

Vivid watercolor paintbox for eukaryotic algae journal, April 2014

Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome journal, February 2011

A Cyanobacterial Phytochrome Two-Component Light Sensory System journal, September 1997

Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle journal, March 2013

Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns journal, April 2014

Ubiquitous Structural Signaling in Bacterial Phytochromes journal, August 2015

Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803 journal, June 2011

Genetic Analysis Reveals the Identity of the Photoreceptor for Phototaxis in Hormogonium Filaments of Nostoc punctiforme journal, December 2014

High irradiance responses involving photoreversible multiple photoreceptors as related to photoperiodic induction of cell division in Euglena journal, February 2007

Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora journal, October 2016

Light-induced alteration of c-di-GMP level controls motility of Synechocystis sp. PCC 6803: c-di-GMP controls cyanobacterial phototaxis journal, June 2012

Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion journal, March 2016

Photoreceptor Signaling Networks in Plant Responses to Shade journal, April 2013

Occurrence of Far-Red Light Photoacclimation (FaRLiP) in Diverse Cyanobacteria journal, December 2014

Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes journal, June 2011

Phytochrome functions in Arabidopsis development journal, October 2009

A Brief History of Phytochromes journal, April 2010

Signal amplification and transduction in phytochrome photosensors journal, April 2014

The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2 journal, January 2017

Phytochrome three-dimensional structures and functions journal, March 2010

Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont journal, June 2016

Phytochrome diversity in green plants and the origin of canonical plant phytochromes
journal, July 2015

Far-red light photoacclimation (FaRLiP) in Synechococcus sp. PCC 7335: I. Regulation of FaRLiP gene expression
journal, September 2016

The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry
journal, January 2015

Marine algae and land plants share conserved phytochrome signaling systems
journal, September 2014

Holophytochrome-Interacting Proteins in Physcomitrella: Putative Actors in Phytochrome Cytoplasmic Signaling
journal, May 2016

Data access for the 1,000 Plants (1KP) project
journal, October 2014

Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem
journal, August 2003

Comparison of transcriptome under red and blue light culture of Saccharina japonica (Phaeophyceae)
journal, January 2013

Adaptive and acclimative responses of cyanobacteria to far-red light: Responses of cyanobacteria to far-red light
journal, August 2015

Eukaryotic algal phytochromes span the visible spectrum
journal, February 2014

Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome
journal, October 2011

Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome
journal, June 2014

Paulinella longichromatophora sp. nov., a New Marine Photosynthetic Testate Amoeba Containing a Chromatophore
journal, February 2016

Light-dependent chlorophyll f synthase is a highly divergent paralog of PsbA of photosystem II
journal, July 2016

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
journal, June 2014

Redesigning photosynthesis to sustainably meet global food and bioenergy demand
journal, June 2015

Structural photoactivation of a full-length bacterial phytochrome
journal, August 2016

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions
journal, March 2016

RfpA, RfpB, and RfpC are the Master Control Elements of Far-Red Light Photoacclimation (FaRLiP)
journal, November 2015

Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean
journal, March 2016

From The Cover: A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution
journal, September 2005

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome
journal, November 2005

Streptophyte phytochromes exhibit an N-terminus of cyanobacterial origin and a C-terminus of proteobacterial origin
journal, April 2015

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light
journal, August 2014

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants
journal, February 2012

Phytochrome signaling mechanisms and the control of plant development
journal, November 2011

Vivid watercolor paintbox for eukaryotic algae
journal, April 2014

Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome
journal, February 2011

A Cyanobacterial Phytochrome Two-Component Light Sensory System
journal, September 1997

Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle
journal, March 2013

Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns
journal, April 2014

Ubiquitous Structural Signaling in Bacterial Phytochromes
journal, August 2015

Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803
journal, June 2011

Genetic Analysis Reveals the Identity of the Photoreceptor for Phototaxis in Hormogonium Filaments of Nostoc punctiforme
journal, December 2014

High irradiance responses involving photoreversible multiple photoreceptors as related to photoperiodic induction of cell division in Euglena
journal, February 2007

Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora
journal, October 2016

Light-induced alteration of c-di-GMP level controls motility of Synechocystis sp. PCC 6803: c-di-GMP controls cyanobacterial phototaxis
journal, June 2012

Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion
journal, March 2016

Photoreceptor Signaling Networks in Plant Responses to Shade
journal, April 2013

Occurrence of Far-Red Light Photoacclimation (FaRLiP) in Diverse Cyanobacteria
journal, December 2014

Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes
journal, June 2011

Phytochrome functions in Arabidopsis development
journal, October 2009

A Brief History of Phytochromes
journal, April 2010

Signal amplification and transduction in phytochrome photosensors
journal, April 2014

The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2
journal, January 2017

Phytochrome three-dimensional structures and functions
journal, March 2010

Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont
journal, June 2016