The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2
- Authors:
-
[1]
- Department of Molecular and Cellular Biology University of California Davis CA 95616 USA
- Department of Biology Duke University Durham NC 27708 USA
- CSIRO National Research Collections Australia Australian National Herbarium Canberra ACT 2601 Australia
- Publication Date:
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1401047
- Grant/Contract Number:
- DE‐FG02‐09ER16117; FG02-09ER16117
- Resource Type:
- Publisher's Accepted Manuscript
- Journal Name:
- New Phytologist
- Additional Journal Information:
- Journal Name: New Phytologist Journal Volume: 214 Journal Issue: 3; Journal ID: ISSN 0028-646X
- Publisher:
- Wiley-Blackwell
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
Rockwell, Nathan C., Martin, Shelley S., Li, Fay‐Wei, Mathews, Sarah, and Lagarias, John Clark. The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2. United Kingdom: N. p., 2017.
Web. doi:10.1111/nph.14422.
Rockwell, Nathan C., Martin, Shelley S., Li, Fay‐Wei, Mathews, Sarah, & Lagarias, John Clark. The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2. United Kingdom. https://doi.org/10.1111/nph.14422
Rockwell, Nathan C., Martin, Shelley S., Li, Fay‐Wei, Mathews, Sarah, and Lagarias, John Clark. Fri .
"The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2". United Kingdom. https://doi.org/10.1111/nph.14422.
@article{osti_1401047,
title = {The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2},
author = {Rockwell, Nathan C. and Martin, Shelley S. and Li, Fay‐Wei and Mathews, Sarah and Lagarias, John Clark},
abstractNote = {},
doi = {10.1111/nph.14422},
journal = {New Phytologist},
number = 3,
volume = 214,
place = {United Kingdom},
year = {2017},
month = {1}
}
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Works referenced in this record:
Red/Green Cyanobacteriochromes: Sensors of Color and Power
journal, November 2012
- Rockwell, Nathan C.; Martin, Shelley S.; Lagarias, J. Clark
- Biochemistry, Vol. 51, Issue 48
(3Z)- and (3E)-phytochromobilin are intermediates in the biosynthesis of the phytochrome chromophore
journal, May 1995
- Terry, Mj; McDowell, Mt; Lagarias, Jc
- Journal of Biological Chemistry, Vol. 270, Issue 19
Phytochrome diversity in green plants and the origin of canonical plant phytochromes
journal, July 2015
- Li, Fay-Wei; Melkonian, Michael; Rothfels, Carl J.
- Nature Communications, Vol. 6, Issue 1
Harnessing phytochrome's glowing potential
journal, November 2004
- Fischer, A. J.; Lagarias, J. C.
- Proceedings of the National Academy of Sciences, Vol. 101, Issue 50
Phylotranscriptomic analysis of the origin and early diversification of land plants
journal, October 2014
- Wickett, Norman J.; Mirarab, Siavash; Nguyen, Nam
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 45
Multiple Roles of a Conserved GAF Domain Tyrosine Residue in Cyanobacterial and Plant Phytochromes †
journal, November 2005
- Fischer, Amanda J.; Rockwell, Nathan C.; Jang, Abigail Y.
- Biochemistry, Vol. 44, Issue 46
Genetic engineering of phytochrome biosynthesis in bacteria
journal, September 2001
- Gambetta, G. A.; Lagarias, J. C.
- Proceedings of the National Academy of Sciences, Vol. 98, Issue 19
Marine algae and land plants share conserved phytochrome signaling systems
journal, September 2014
- Duanmu, D.; Bachy, C.; Sudek, S.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 44
New biosynthetic pathway for pink pigments from uncultured oceanic viruses: Viral pink pigments
journal, April 2016
- Ledermann, Benjamin; Béjà, Oded; Frankenberg-Dinkel, Nicole
- Environmental Microbiology, Vol. 18, Issue 12
Leaf Optical Properties of Rainforest sun and Extreme Shade Plants
journal, August 1986
- Lee, David W.; Graham, Rita
- American Journal of Botany, Vol. 73, Issue 8
Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts
journal, May 2014
- Rockwell, Nathan C.; Martin, Shelley S.; Gulevich, Alexander G.
- Biochemistry, Vol. 53, Issue 19
The Arabidopsis thaliana HY1 locus, required for phytochrome-chromophore biosynthesis, encodes a protein related to heme oxygenases
journal, May 1999
- Davis, S. J.; Kurepa, J.; Vierstra, R. D.
- Proceedings of the National Academy of Sciences, Vol. 96, Issue 11
Phytochrome Structure and Signaling Mechanisms
journal, June 2006
- Rockwell, Nathan C.; Su, Yi-Shin; Lagarias, J. Clark
- Annual Review of Plant Biology, Vol. 57, Issue 1
Data access for the 1,000 Plants (1KP) project
journal, October 2014
- Matasci, Naim; Hung, Ling-Hong; Yan, Zhixiang
- GigaScience, Vol. 3, Issue 1
Mechanistic Insight into the Photosensory Versatility of DXCF Cyanobacteriochromes
journal, April 2012
- Rockwell, Nathan C.; Martin, Shelley S.; Lagarias, J. Clark
- Biochemistry, Vol. 51, Issue 17
Heterologous Expression and Characterization of Recombinant Phytochrome from the Green Alga Mougeotia scalaris¶
journal, October 2002
- Jorissen, H. J. M. M.; Braslavsky, S. E.; Wagner, G.
- Photochemistry and Photobiology, Vol. 76, Issue 4
Crystal Structures of the Substrate-Bound Forms of Red Chlorophyll Catabolite Reductase: Implications for Site-Specific and Stereospecific Reaction
journal, October 2010
- Sugishima, Masakazu; Okamoto, Yukihiro; Noguchi, Masato
- Journal of Molecular Biology, Vol. 402, Issue 5
The Arabidopsis HY2 Gene Encodes Phytochromobilin Synthase, a Ferredoxin-Dependent Biliverdin Reductase
journal, February 2001
- Kohchi, Takayuki; Mukougawa, Keiko; Frankenberg, Nicole
- The Plant Cell, Vol. 13, Issue 2
Biliverdin Amides Reveal Roles for Propionate Side Chains in Bilin Reductase Recognition and in Holophytochrome Assembly and Photoconversion
journal, July 2010
- Shang, Lixia; Rockwell, Nathan C.; Martin, Shelley S.
- Biochemistry, Vol. 49, Issue 29
Identification of DXCF cyanobacteriochrome lineages with predictable photocycles
journal, January 2015
- Rockwell, Nathan C.; Martin, Shelley S.; Lagarias, J. Clark
- Photochemical & Photobiological Sciences, Vol. 14, Issue 5
Heterogeneous Photodynamics of the P fr State in the Cyanobacterial Phytochrome Cph1
journal, July 2014
- Kim, Peter W.; Rockwell, Nathan C.; Martin, Shelley S.
- Biochemistry, Vol. 53, Issue 28
Type I and type II reversible photochemistry of phycoerythrocyanin α-subunit from Mastigocladus laminosus both involve Z, E isomerization of phycoviolobilin chromophore and are controlled by sulfhydryls in apoprotein
journal, March 1995
- Zhao, Kai-Hong; Scheer, Hugo
- Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1228, Issue 2-3
Eukaryotic algal phytochromes span the visible spectrum
journal, February 2014
- Rockwell, Nathan C.; Duanmu, Deqiang; Martin, Shelley S.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 10
Phycocyanobilin Is the Natural Precursor of the Phytochrome Chromophore in the Green Alga Mesotaenium caldariorum
journal, October 1997
- Wu, Shu-Hsing; McDowell, Michael T.; Lagarias, J. Clark
- Journal of Biological Chemistry, Vol. 272, Issue 41
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
journal, September 1997
- Altschul, Stephen F.; Madden, Thomas L.; Schäffer, Alejandro A.
- Nucleic Acids Research, Vol. 25, Issue 17, p. 3389-3402
Insights into Phycoerythrobilin Biosynthesis Point toward Metabolic Channeling
journal, July 2006
- Dammeyer, Thorben; Frankenberg-Dinkel, Nicole
- Journal of Biological Chemistry, Vol. 281, Issue 37
Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome
journal, June 2014
- Burgie, E. S.; Bussell, A. N.; Walker, J. M.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 28
The Cyanobacteriochrome, TePixJ, Isomerizes Its Own Chromophore by Converting Phycocyanobilin to Phycoviolobilin
journal, February 2011
- Ishizuka, Takami; Kamiya, Ayumi; Suzuki, Hiroyuki
- Biochemistry, Vol. 50, Issue 6
Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli
journal, January 2006
- Mukougawa, Keiko; Kanamoto, Hirosuke; Kobayashi, Toshikazu
- FEBS Letters, Vol. 580, Issue 5
Probing protein-chromophore interactions in Cph1 phytochrome by mutagenesis
journal, April 2006
- Hahn, Janina; Strauss, Holger M.; Landgraf, Frank T.
- FEBS Journal, Vol. 273, Issue 7, p. 1415-1429
The Elm1 (Zm Hy2 ) Gene of Maize Encodes a Phytochromobilin Synthase
journal, September 2004
- Sawers, Ruairidh J. H.; Linley, Philip J.; Gutierrez-Marcos, Jose F.
- Plant Physiology, Vol. 136, Issue 1
The D-ring, Not the A-ring, Rotates in Synechococcus OS-B′ Phytochrome
journal, December 2013
- Song, Chen; Psakis, Georgios; Kopycki, Jakub
- Journal of Biological Chemistry, Vol. 289, Issue 5
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
journal, June 2014
- Keeling, Patrick J.; Burki, Fabien; Wilcox, Heather M.
- PLoS Biology, Vol. 12, Issue 6
Visualization of bilin-linked peptides and proteins in polyacrylamide gels
journal, July 1986
- Berkelman, Tom R.; Lagarias, J. Clark
- Analytical Biochemistry, Vol. 156, Issue 1
Why is water blue?
journal, August 1993
- Braun, Charles L.; Smirnov, Sergei N.
- Journal of Chemical Education, Vol. 70, Issue 8
Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates
journal, April 2015
- Rockwell, Nathan C.; Martin, Shelley S.; Lim, Sunghyuk
- Biochemistry, Vol. 54, Issue 16
Structural and mechanistic insight into the ferredoxin-mediated two-electron reduction of bilins
journal, September 2011
- Busch, Andrea W. U.; Reijerse, Edward J.; Lubitz, Wolfgang
- Biochemical Journal, Vol. 439, Issue 2
The Arabidopsis Photomorphogenic Mutant hy1 Is Deficient in Phytochrome Chromophore Biosynthesis as a Result of a Mutation in a Plastid Heme Oxygenase
journal, March 1999
- Muramoto, Takuya; Kohchi, Takayuki; Yokota, Akiho
- The Plant Cell, Vol. 11, Issue 3
Phytochrome from the green alga Mesotaenium caldariorum. Purification and preliminary characterization.
journal, April 1990
- Kidd, D. G.; Lagarias, J. C.
- Journal of Biological Chemistry, Vol. 265, Issue 12
On the Collective Nature of Phytochrome Photoactivation
journal, December 2011
- Song, Chen; Psakis, Georgios; Lang, Christina
- Biochemistry, Vol. 50, Issue 51
Phylogeny and Molecular Evolution of the Green Algae
journal, January 2012
- Leliaert, Frederik; Smith, David R.; Moreau, Hervé
- Critical Reviews in Plant Sciences, Vol. 31, Issue 1
Flexible mapping of homology onto structure with Homolmapper
journal, April 2007
- Rockwell, Nathan C.; Lagarias, J. Clark
- BMC Bioinformatics, Vol. 8, Issue 1
Dynamic Inhomogeneity in the Photodynamics of Cyanobacterial Phytochrome Cph1
journal, April 2014
- Kim, Peter W.; Rockwell, Nathan C.; Martin, Shelley S.
- Biochemistry, Vol. 53, Issue 17
Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival
journal, January 2013
- Duanmu, Deqiang; Casero, David; Dent, Rachel M.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 9
Chromopeptides from phytochrome. The structure and linkage of the PR form of the phytochrome chromophore
journal, July 1980
- Lagarias, J. Clark; Rapoport, Henry
- Journal of the American Chemical Society, Vol. 102, Issue 14
Red-shifted red/green-type cyanobacteriochrome AM1_1870g3 from the chlorophyll d-bearing cyanobacterium Acaryochloris marina
journal, May 2015
- Narikawa, Rei; Fushimi, Keiji
- Biochemical and Biophysical Research Communications, Vol. 461, Issue 2
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista
journal, January 2016
- Burki, Fabien; Kaplan, Maia; Tikhonenkov, Denis V.
- Proceedings of the Royal Society B: Biological Sciences, Vol. 283, Issue 1823
A prokaryotic phytochrome
journal, April 1997
- Hughes, Jon; Lamparter, Tilman; Mittmann, Franz
- Nature, Vol. 386, Issue 6626
Ultrafast E to Z photoisomerization dynamics of the Cph1 phytochrome
journal, October 2012
- Kim, Peter W.; Pan, Jie; Rockwell, Nathan C.
- Chemical Physics Letters, Vol. 549
Over-production of Proteins inEscherichia coli: Mutant Hosts that Allow Synthesis of some Membrane Proteins and Globular Proteins at High Levels
journal, July 1996
- Miroux, Bruno; Walker, John E.
- Journal of Molecular Biology, Vol. 260, Issue 3
The System of Contractile Vacuoles in the Green Alga Mesostigma viride (Streptophyta)
journal, August 2009
- Buchmann, Karin; Becker, Burkhard
- Protist, Vol. 160, Issue 3
Function and distribution of bilin biosynthesis enzymes in photosynthetic organisms
journal, January 2008
- Dammeyer, Thorben; Frankenberg-Dinkel, Nicole
- Photochemical & Photobiological Sciences, Vol. 7, Issue 10
Phycoviolobilin Formation and Spectral Tuning in the DXCF Cyanobacteriochrome Subfamily
journal, February 2012
- Rockwell, Nathan C.; Martin, Shelley S.; Gulevich, Alexander G.
- Biochemistry, Vol. 51, Issue 7
Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants
journal, February 2012
- Price, D. C.; Chan, C. X.; Yoon, H. S.
- Science, Vol. 335, Issue 6070
Type I reversible photochemistry of phycoerythrocyanin involves Z/E-isomerization of α-84 phycoviolobilin chromophore
journal, March 1995
- Zhao, Kai-Hong; Haessner, Rainer; Cmiel, Edmund
- Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1228, Issue 2-3
Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15- E,anti Chromophore in the Photoproduct
journal, June 2015
- Rockwell, Nathan C.; Martin, Shelley S.; Lim, Sunghyuk
- Biochemistry, Vol. 54, Issue 24
Mechanism of Cph1 Phytochrome Assembly from Stopped-Flow Kinetics and Circular Dichroism †
journal, November 2003
- Borucki, Berthold; Otto, Harald; Rottwinkel, Gregor
- Biochemistry, Vol. 42, Issue 46
Phytochrome signaling mechanisms and the control of plant development
journal, November 2011
- Chen, Meng; Chory, Joanne
- Trends in Cell Biology, Vol. 21, Issue 11
Insight into the Radical Mechanism of Phycocyanobilin−Ferredoxin Oxidoreductase (PcyA) Revealed by X-ray Crystallography and Biochemical Measurements †
journal, February 2007
- Tu, Shih-Long; Rockwell, Nathan C.; Lagarias, J. Clark
- Biochemistry, Vol. 46, Issue 6
A biliverdin-binding cyanobacteriochrome from the chlorophyll d–bearing cyanobacterium Acaryochloris marina
journal, January 2015
- Narikawa, Rei; Nakajima, Takahiro; Aono, Yuki
- Scientific Reports, Vol. 5, Issue 1
Vivid watercolor paintbox for eukaryotic algae
journal, April 2014
- Forest, K. T.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 15
Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome
journal, February 2011
- Song, C.; Psakis, G.; Lang, C.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 10
A Cyanobacterial Phytochrome Two-Component Light Sensory System
journal, September 1997
- Yeh, K.
- Science, Vol. 277, Issue 5331
Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle
journal, March 2013
- Hirose, Y.; Rockwell, N. C.; Nishiyama, K.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 13
Heteronuclear Solution-State NMR Studies of the Chromophore in Cyanobacterial Phytochrome Cph1 †
journal, June 2005
- Strauss, Holger M.; Hughes, Jon; Schmieder, Peter
- Biochemistry, Vol. 44, Issue 23
The Zoospore of Chlorokybus Atmophyticus, a Charophyte with Sarcinoid Growth Habit
journal, May 1980
- Rogers, Catherine E.; Mattox, Karl R.; Stewart, Kenneth D.
- American Journal of Botany, Vol. 67, Issue 5
Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis
journal, May 2012
- Chen, Y. -R.; Su, Y. -s.; Tu, S. -L.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 21
Optical modeling of the upper ocean in relation to its biogenous matter content (case I waters)
journal, January 1988
- Morel, André
- Journal of Geophysical Research, Vol. 93, Issue C9
Distinct classes of red/far-red photochemistry within the phytochrome superfamily
journal, April 2009
- Rockwell, N. C.; Shang, L.; Martin, S. S.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 15
Recombinant Phytochrome of the Moss Ceratodon purpureus: Heterologous Expression and Kinetic Analysis of P r → P fr Conversion
journal, December 1998
- Zeidler, Mathias; Lamparter, Tilman; Hughes, Jon
- Photochemistry and Photobiology, Vol. 68, Issue 6
The structure of a complete phytochrome sensory module in the Pr ground state
journal, September 2008
- Essen, L. -O.; Mailliet, J.; Hughes, J.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 38
Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IX , a key enzyme in the biosynthesis of phycocyanobilin
journal, December 2005
- Hagiwara, Y.; Sugishima, M.; Takahashi, Y.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 1
Efficient Phage-Mediated Pigment Biosynthesis in Oceanic Cyanobacteria
journal, March 2008
- Dammeyer, Thorben; Bagby, Sarah C.; Sullivan, Matthew B.
- Current Biology, Vol. 18, Issue 6
Photoreceptor Signaling Networks in Plant Responses to Shade
journal, April 2013
- Casal, Jorge J.
- Annual Review of Plant Biology, Vol. 64, Issue 1
The GapA/B Gene Duplication Marks the Origin of Streptophyta (Charophytes and Land Plants)
journal, March 2006
- Petersen, Jörn; Teich, René; Becker, Burkhard
- Molecular Biology and Evolution, Vol. 23, Issue 6
Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multipulse Manipulations
journal, July 2013
- Kim, Peter W.; Rockwell, Nathan C.; Freer, Lucy H.
- The Journal of Physical Chemistry Letters, Vol. 4, Issue 16
Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes
journal, June 2011
- Rockwell, N. C.; Martin, S. S.; Feoktistova, K.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 29
Phytochrome functions in Arabidopsis development
journal, October 2009
- Franklin, K. A.; Quail, P. H.
- Journal of Experimental Botany, Vol. 61, Issue 1
Observations on the Sexual Cycle of the Saccoderm Desmid Spirotaenia condensata
journal, January 1966
- Hoshaw, Robert W.; Hilton, Richard L.
- Journal of the Arizona Academy of Science, Vol. 4, Issue 2
Accounting for Solvent Accessibility and Secondary Structure in Protein Phylogenetics Is Clearly Beneficial
journal, March 2010
- Le, Si Quang; Gascuel, Olivier
- Systematic Biology, Vol. 59, Issue 3
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation
journal, May 2014
- Hori, Koichi; Maruyama, Fumito; Fujisawa, Takatomo
- Nature Communications, Vol. 5, Issue 1
Functional Genomic Analysis of the HY2 Family of Ferredoxin-Dependent Bilin Reductases from Oxygenic Photosynthetic Organisms
journal, April 2001
- Frankenberg, Nicole; Mukougawa, Keiko; Kohchi, Takayuki
- The Plant Cell, Vol. 13, Issue 4
Reconstitution of Blue−Green Reversible Photoconversion of a Cyanobacterial Photoreceptor, PixJ1, in Phycocyanobilin-Producing Escherichia coli †
journal, March 2006
- Yoshihara, Shizue; Shimada, Takashi; Matsuoka, Daisuke
- Biochemistry, Vol. 45, Issue 11
Broad Phylogenomic Sampling and the Sister Lineage of Land Plants
journal, January 2012
- Timme, Ruth E.; Bachvaroff, Tsvetan R.; Delwiche, Charles F.
- PLoS ONE, Vol. 7, Issue 1
Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes
journal, October 2014
- Rockwell, Nathan C.; Lagarias, J. C.; Bhattacharya, Debashish
- Frontiers in Ecology and Evolution, Vol. 2