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Title: The primed SNARE–complexin–synaptotagmin complex for neuronal exocytosis

Abstract

Synaptotagmin, complexin, and neuronal SNARE (soluble N-ethylmaleimide sensitive factor attachment protein receptor) proteins mediate evoked synchronous neurotransmitter release, but the molecular mechanisms mediating the cooperation between these molecules remain unclear. Here we determine crystal structures of the primed pre-fusion SNARE–complexin–synaptotagmin-1 complex. These structures reveal an unexpected tripartite interface between synaptotagmin-1 and both the SNARE complex and complexin. Simultaneously, a second synaptotagmin-1 molecule interacts with the other side of the SNARE complex via the previously identified primary interface. Mutations that disrupt either interface in solution also severely impair evoked synchronous release in neurons, suggesting that both interfaces are essential for the primed pre-fusion state. Ca2+ binding to the synaptotagmin-1 molecules unlocks the complex, allows full zippering of the SNARE complex, and triggers membrane fusion. In conclusion, the tripartite SNARE–complexin–synaptotagmin-1 complex at a synaptic vesicle docking site has to be unlocked for triggered fusion to start, explaining the cooperation between complexin and synaptotagmin-1 in synchronizing evoked release on the sub-millisecond timescale.

Authors:
 [1];  [1];  [1];  [1];  [2];  [1];  [1]
  1. Stanford Univ., Stanford, CA (United States)
  2. The Univ. of Chicago, Chicago, IL (United States); Stanford Univ., Stanford, CA (United States)
Publication Date:
Research Org.:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1394066
Grant/Contract Number:  
AC02-76SF00515
Resource Type:
Accepted Manuscript
Journal Name:
Nature (London)
Additional Journal Information:
Journal Name: Nature (London); Journal Volume: 548; Journal Issue: 7668; Journal ID: ISSN 0028-0836
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES

Citation Formats

Zhou, Qiangjun, Zhou, Peng, Wang, Austin L., Wu, Dick, Zhao, Minglei, Sudhof, Thomas C., and Brunger, Axel T. The primed SNARE–complexin–synaptotagmin complex for neuronal exocytosis. United States: N. p., 2017. Web. doi:10.1038/nature23484.
Zhou, Qiangjun, Zhou, Peng, Wang, Austin L., Wu, Dick, Zhao, Minglei, Sudhof, Thomas C., & Brunger, Axel T. The primed SNARE–complexin–synaptotagmin complex for neuronal exocytosis. United States. https://doi.org/10.1038/nature23484
Zhou, Qiangjun, Zhou, Peng, Wang, Austin L., Wu, Dick, Zhao, Minglei, Sudhof, Thomas C., and Brunger, Axel T. Wed . "The primed SNARE–complexin–synaptotagmin complex for neuronal exocytosis". United States. https://doi.org/10.1038/nature23484. https://www.osti.gov/servlets/purl/1394066.
@article{osti_1394066,
title = {The primed SNARE–complexin–synaptotagmin complex for neuronal exocytosis},
author = {Zhou, Qiangjun and Zhou, Peng and Wang, Austin L. and Wu, Dick and Zhao, Minglei and Sudhof, Thomas C. and Brunger, Axel T.},
abstractNote = {Synaptotagmin, complexin, and neuronal SNARE (soluble N-ethylmaleimide sensitive factor attachment protein receptor) proteins mediate evoked synchronous neurotransmitter release, but the molecular mechanisms mediating the cooperation between these molecules remain unclear. Here we determine crystal structures of the primed pre-fusion SNARE–complexin–synaptotagmin-1 complex. These structures reveal an unexpected tripartite interface between synaptotagmin-1 and both the SNARE complex and complexin. Simultaneously, a second synaptotagmin-1 molecule interacts with the other side of the SNARE complex via the previously identified primary interface. Mutations that disrupt either interface in solution also severely impair evoked synchronous release in neurons, suggesting that both interfaces are essential for the primed pre-fusion state. Ca2+ binding to the synaptotagmin-1 molecules unlocks the complex, allows full zippering of the SNARE complex, and triggers membrane fusion. In conclusion, the tripartite SNARE–complexin–synaptotagmin-1 complex at a synaptic vesicle docking site has to be unlocked for triggered fusion to start, explaining the cooperation between complexin and synaptotagmin-1 in synchronizing evoked release on the sub-millisecond timescale.},
doi = {10.1038/nature23484},
journal = {Nature (London)},
number = 7668,
volume = 548,
place = {United States},
year = {Wed Aug 16 00:00:00 EDT 2017},
month = {Wed Aug 16 00:00:00 EDT 2017}
}

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Works referenced in this record:

Synaptotagmin: a calcium sensor on the synaptic vesicle surface
journal, May 1992


Complexin Clamps Asynchronous Release by Blocking a Secondary Ca2+ Sensor via Its Accessory α Helix
journal, December 2010


A Complexin/Synaptotagmin 1 Switch Controls Fast Synaptic Vesicle Exocytosis
journal, September 2006


Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 Å resolution
journal, September 1998

  • Sutton, R. Bryan; Fasshauer, Dirk; Jahn, Reinhard
  • Nature, Vol. 395, Issue 6700
  • DOI: 10.1038/26412

Architecture of the synaptotagmin–SNARE machinery for neuronal exocytosis
journal, August 2015

  • Zhou, Qiangjun; Lai, Ying; Bacaj, Taulant
  • Nature, Vol. 525, Issue 7567
  • DOI: 10.1038/nature14975

Complexin Controls Spontaneous and Evoked Neurotransmitter Release by Regulating the Timing and Properties of Synaptotagmin Activity
journal, December 2012


Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion
journal, January 2009


X-ray Structure of a Neuronal Complexin-SNARE Complex from Squid
journal, May 2002

  • Bracher, Andreas; Kadlec, Jan; Betz, Heinrich
  • Journal of Biological Chemistry, Vol. 277, Issue 29
  • DOI: 10.1074/jbc.M203460200

High Resolution Structure, Stability, and Synaptotagmin Binding of a Truncated Neuronal SNARE Complex
journal, December 2002

  • Ernst, James A.; Brunger, Axel T.
  • Journal of Biological Chemistry, Vol. 278, Issue 10
  • DOI: 10.1074/jbc.M211889200

Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen
journal, August 2020

  • Zacarias, Sónia; Temporão, Adriana; Carpentier, Philippe
  • JBIC Journal of Biological Inorganic Chemistry, Vol. 25, Issue 6
  • DOI: 10.1007/s00775-020-01814-y

PtdInsP2 and PtdSer cooperate to trap synaptotagmin-1 to the plasma membrane in the presence of calcium
journal, October 2016


Monitoring synaptic transmission in primary neuronal cultures using local extracellular stimulation
journal, March 2007


PHENIX : building new software for automated crystallographic structure determination
journal, October 2002

  • Adams, Paul D.; Grosse-Kunstleve, Ralf W.; Hung, Li-Wei
  • Acta Crystallographica Section D Biological Crystallography, Vol. 58, Issue 11
  • DOI: 10.1107/S0907444902016657

Complexins: small but capable
journal, August 2015

  • Mohrmann, Ralf; Dhara, Madhurima; Bruns, Dieter
  • Cellular and Molecular Life Sciences, Vol. 72, Issue 22
  • DOI: 10.1007/s00018-015-1998-8

Processive ATP-driven Substrate Disassembly by the N -Ethylmaleimide-sensitive Factor (NSF) Molecular Machine
journal, June 2013

  • Cipriano, Daniel J.; Jung, Jaemyeong; Vivona, Sandro
  • Journal of Biological Chemistry, Vol. 288, Issue 32
  • DOI: 10.1074/jbc.M113.476705

Syntaxin-1 N-peptide and Habc-domain perform distinct essential functions in synaptic vesicle fusion
journal, November 2012


Synaptotagmin I functions as a calcium regulator of release probability
journal, March 2001

  • Fernández-Chacón, Rafael; Königstorfer, Andreas; Gerber, Stefan H.
  • Nature, Vol. 410, Issue 6824
  • DOI: 10.1038/35065004

Single-molecule FRET–derived model of the synaptotagmin 1–SNARE fusion complex
journal, February 2010

  • Choi, Ucheor B.; Strop, Pavel; Vrljic, Marija
  • Nature Structural & Molecular Biology, Vol. 17, Issue 3
  • DOI: 10.1038/nsmb.1763

Cell biology of Ca2+-triggered exocytosis
journal, August 2010


Morphologies of synaptic protein membrane fusion interfaces
journal, July 2017

  • Gipson, Preeti; Fukuda, Yoshiyuki; Danev, Radostin
  • Proceedings of the National Academy of Sciences, Vol. 114, Issue 34
  • DOI: 10.1073/pnas.1708492114

Complexin synchronizes primed vesicle exocytosis and regulates fusion pore dynamics
journal, March 2014

  • Dhara, Madhurima; Yarzagaray, Antonio; Schwarz, Yvonne
  • The Journal of Cell Biology, Vol. 204, Issue 7
  • DOI: 10.1083/jcb.201311085

Inference of Macromolecular Assemblies from Crystalline State
journal, September 2007


An optimized growth medium for increased recombinant protein secretion titer via the type III secretion system
journal, February 2021

  • Burdette, Lisa Ann; Wong, Han Teng; Tullman-Ercek, Danielle
  • Microbial Cell Factories, Vol. 20, Issue 1
  • DOI: 10.1186/s12934-021-01536-z

Synaptotagmin-1 functions as a Ca2+ sensor for spontaneous release
journal, May 2009

  • Xu, Jun; Pang, Zhiping P.; Shin, Ok-Ho
  • Nature Neuroscience, Vol. 12, Issue 6
  • DOI: 10.1038/nn.2320

The Principle of Membrane Fusion in the Cell (Nobel Lecture)
journal, August 2014

  • Rothman, James Edward
  • Angewandte Chemie International Edition, Vol. 53, Issue 47
  • DOI: 10.1002/anie.201402380

Distinct roles for two synaptotagmin isoforms in synchronous and asynchronous transmitter release at zebrafish neuromuscular junction
journal, July 2010

  • Wen, H.; Linhoff, M. W.; McGinley, M. J.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 31
  • DOI: 10.1073/pnas.1008598107

Complexin induces a conformational change at the membrane-proximal C-terminal end of the SNARE complex
journal, June 2016


Neurotransmitter Release: The Last Millisecond in the Life of a Synaptic Vesicle
journal, October 2013


Direct Interaction of a Ca 2+ -binding Loop of Synaptotagmin with Lipid Bilayers
journal, May 1998


 E-catenin is an autoinhibited molecule that coactivates vinculin
journal, May 2012

  • Choi, H. -J.; Pokutta, S.; Cadwell, G. W.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 22
  • DOI: 10.1073/pnas.1203906109

Functional analysis of the interface between the tandem C2 domains of synaptotagmin-1
journal, March 2016

  • Evans, Chantell S.; He, Zixuan; Bai, Hua
  • Molecular Biology of the Cell, Vol. 27, Issue 6
  • DOI: 10.1091/mbc.E15-07-0503

SNAREpins: Minimal Machinery for Membrane Fusion
journal, March 1998


Synaptotagmin I: A major Ca2+ sensor for transmitter release at a central synapse
journal, November 1994


Differential but convergent functions of Ca2+ binding to synaptotagmin-1 C2 domains mediate neurotransmitter release
journal, September 2009

  • Shin, O. -H.; Xu, J.; Rizo, J.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 38
  • DOI: 10.1073/pnas.0908798106

N-terminal domain of complexin independently activates calcium-triggered fusion
journal, July 2016

  • Lai, Ying; Choi, Ucheor B.; Zhang, Yunxiang
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 32
  • DOI: 10.1073/pnas.1604348113

Dynamic binding mode of a Synaptotagmin-1–SNARE complex in solution
journal, June 2015

  • Brewer, Kyle D.; Bacaj, Taulant; Cavalli, Andrea
  • Nature Structural & Molecular Biology, Vol. 22, Issue 7
  • DOI: 10.1038/nsmb.3035

Synaptotagmin-1 and Synaptotagmin-7 Trigger Synchronous and Asynchronous Phases of Neurotransmitter Release
journal, November 2013


Complexin cross-links prefusion SNAREs into a zigzag array
journal, July 2011

  • Kümmel, Daniel; Krishnakumar, Shyam S.; Radoff, Daniel T.
  • Nature Structural & Molecular Biology, Vol. 18, Issue 8
  • DOI: 10.1038/nsmb.2101

Synaptotagmin-1 and -7 are functionally overlapping Ca2+ sensors for exocytosis in adrenal chromaffin cells
journal, February 2008

  • Schonn, J. -S.; Maximov, A.; Lao, Y.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 10
  • DOI: 10.1073/pnas.0712373105

The Ca 2+ Affinity of Synaptotagmin 1 Is Markedly Increased by a Specific Interaction of Its C2B Domain with Phosphatidylinositol 4,5-Bisphosphate
journal, July 2009

  • Radhakrishnan, Anand; Stein, Alexander; Jahn, Reinhard
  • Journal of Biological Chemistry, Vol. 284, Issue 38
  • DOI: 10.1074/jbc.M109.042499

Phospholipid binding by a synaptic vesicle protein homologous to the regulatory region of protein kinase C
journal, May 1990

  • Perin, Mark S.; Fried, Victor A.; Mignery, Gregory A.
  • Nature, Vol. 345, Issue 6272
  • DOI: 10.1038/345260a0

MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009

  • Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
  • DOI: 10.1107/S0907444909042073

Coot model-building tools for molecular graphics
journal, November 2004

  • Emsley, Paul; Cowtan, Kevin
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
  • DOI: 10.1107/S0907444904019158

Protein production by auto-induction in high-density shaking cultures
journal, May 2005


Postsynaptic synaptotagmins mediate AMPA receptor exocytosis during LTP
journal, March 2017

  • Wu, Dick; Bacaj, Taulant; Morishita, Wade
  • Nature, Vol. 544, Issue 7650
  • DOI: 10.1038/nature21720

Overview of the CCP4 suite and current developments.
text, January 2011

  • Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D.
  • Apollo - University of Cambridge Repository
  • DOI: 10.17863/cam.52322

The Calcium-Dependent and Calcium-Independent Membrane Binding of Synaptotagmin 1: Two Modes of C2B Binding
journal, March 2009

  • Kuo, Weiwei; Herrick, Dawn Z.; Ellena, Jeffrey F.
  • Journal of Molecular Biology, Vol. 387, Issue 2
  • DOI: 10.1016/j.jmb.2009.01.064

Complexin Activates Exocytosis of Distinct Secretory Vesicles Controlled by Different Synaptotagmins
journal, January 2013


Post-Translational Modifications and Lipid Binding Profile of Insect Cell-Expressed Full-Length Mammalian Synaptotagmin 1
journal, November 2011

  • Vrljic, Marija; Strop, Pavel; Hill, Ryan C.
  • Biochemistry, Vol. 50, Issue 46
  • DOI: 10.1021/bi200998y

Calcium-sensing beyond neurotransmitters: functions of synaptotagmins in neuroendocrine and endocrine secretion
journal, June 2009

  • Gustavsson, Natalia; Han, Weiping
  • Bioscience Reports, Vol. 29, Issue 4
  • DOI: 10.1042/BSR20090031

Three-Dimensional Structure of the Complexin/SNARE Complex
journal, January 2002


Three-dimensional structure of the complexin/snare complex
journal, August 2002

  • Tomchick, D. R.; Chen, X.; Kovrigin, E.
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 58, Issue s1
  • DOI: 10.1107/s0108767302094813

Three-Dimensional Structure of the Synaptotagmin 1 C2B-Domain
journal, December 2001


Phaser crystallographic software
journal, July 2007

  • McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
  • Journal of Applied Crystallography, Vol. 40, Issue 4
  • DOI: 10.1107/S0021889807021206

Genetic Analysis of Synaptotagmin C2 Domain Specificity in Regulating Spontaneous and Evoked Neurotransmitter Release
journal, January 2013


Structural and functional conservation of synaptotagmin (p65) in Drosophila and humans.
journal, January 1991


A single C2 domain from synaptotagmin I is sufficient for high affinity Ca2+/phospholipid binding.
journal, December 1993


Works referencing / citing this record:

Resolving indexing ambiguities in X-ray free-electron laser diffraction patterns
journal, February 2019

  • Uervirojnangkoorn, Monarin; Lyubimov, Artem Y.; Zhou, Qiangjun
  • Acta Crystallographica Section D Structural Biology, Vol. 75, Issue 2
  • DOI: 10.1107/s2059798318013177

Phosphatidylinositol 4,5 Bisphosphate Controls the cis and trans Interactions of Synaptotagmin 1
journal, July 2019


An unexpected INAD PDZ tandem-mediated plcβ binding in Drosophila photo receptors
journal, December 2018


SNARE zippering requires activation by SNARE-like peptides in Sec1/Munc18 proteins
journal, August 2018

  • Yu, Haijia; Shen, Chong; Liu, Yinghui
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 36
  • DOI: 10.1073/pnas.1802645115

Multiple factors maintain assembled trans-SNARE complexes in the presence of NSF and αSNAP
journal, January 2019


Mechanism of neurotransmitter release coming into focus: Mechanism of Neurotransmitter Release
journal, July 2018


The high-affinity calcium sensor synaptotagmin-7 serves multiple roles in regulated exocytosis
journal, May 2018

  • MacDougall, Daniel D.; Lin, Zesen; Chon, Nara L.
  • Journal of General Physiology, Vol. 150, Issue 6
  • DOI: 10.1085/jgp.201711944

The 2018 biomembrane curvature and remodeling roadmap
journal, July 2018

  • Bassereau, Patricia; Jin, Rui; Baumgart, Tobias
  • Journal of Physics D: Applied Physics, Vol. 51, Issue 34
  • DOI: 10.1088/1361-6463/aacb98

Munc18 and Munc13 serve as a functional template to orchestrate neuronal SNARE complex assembly
journal, January 2019


NSF-mediated disassembly of on- and off-pathway SNARE complexes and inhibition by complexin
journal, July 2018


Synaptotagmin oligomerization is essential for calcium control of regulated exocytosis
journal, July 2018

  • Bello, Oscar D.; Jouannot, Ouardane; Chaudhuri, Arunima
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 32
  • DOI: 10.1073/pnas.1808792115

MicroRNA-153 impairs presynaptic plasticity by blocking vesicle release following chronic brain hypoperfusion
journal, April 2020


Hypothesis - buttressed rings assemble, clamp, and release SNAREpins for synaptic transmission
journal, October 2017

  • Rothman, James E.; Krishnakumar, Shyam S.; Grushin, Kirill
  • FEBS Letters, Vol. 591, Issue 21
  • DOI: 10.1002/1873-3468.12874

Intrinsically disordered proteins in synaptic vesicle trafficking and release
journal, January 2019


Structural basis for the clamping and Ca2+ activation of SNARE-mediated fusion by synaptotagmin
journal, June 2019


Munc13-1 MUN domain and Munc18-1 cooperatively chaperone SNARE assembly through a tetrameric complex
journal, December 2019

  • Shu, Tong; Jin, Huaizhou; Rothman, James E.
  • Proceedings of the National Academy of Sciences, Vol. 117, Issue 2
  • DOI: 10.1073/pnas.1914361117

Synaptotagmin 1 oligomers clamp and regulate different modes of neurotransmitter release
journal, February 2020

  • Tagliatti, Erica; Bello, Oscar D.; Mendonça, Philipe R. F.
  • Proceedings of the National Academy of Sciences, Vol. 117, Issue 7
  • DOI: 10.1073/pnas.1920403117

Synaptotagmin Ca2+ Sensors and Their Spatial Coupling to Presynaptic Cav Channels in Central Cortical Synapses
journal, January 2019


Focused clamping of a single neuronal SNARE complex by complexin under high mechanical tension
journal, September 2018


Calcium Sensors in Neuronal Function and Dysfunction
journal, March 2019

  • Burgoyne, Robert D.; Helassa, Nordine; McCue, Hannah V.
  • Cold Spring Harbor Perspectives in Biology, Vol. 11, Issue 5
  • DOI: 10.1101/cshperspect.a035154

A mechanism for exocytotic arrest by the Complexin C-terminus
journal, July 2018


Synaptotagmin-1 enables frequency coding by suppressing asynchronous release in a temperature dependent manner
journal, August 2019


Sensory Processing at Ribbon Synapses in the Retina and the Cochlea
journal, January 2020


Hypothesis - buttressed rings assemble, clamp, and release SNAREpins for synaptic transmission
journal, October 2017

  • Rothman, James E.; Krishnakumar, Shyam S.; Grushin, Kirill
  • FEBS Letters, Vol. 591, Issue 21
  • DOI: 10.1002/1873-3468.12874

Focused clamping of a single neuronal SNARE complex by complexin under high mechanical tension
journal, September 2018


Munc18 and Munc13 serve as a functional template to orchestrate neuronal SNARE complex assembly
journal, January 2019


Synaptotagmin-1 enables frequency coding by suppressing asynchronous release in a temperature dependent manner
journal, August 2019


Synaptotagmin 1 oligomers clamp and regulate different modes of neurotransmitter release
journal, February 2020

  • Tagliatti, Erica; Bello, Oscar D.; Mendonça, Philipe R. F.
  • Proceedings of the National Academy of Sciences, Vol. 117, Issue 7
  • DOI: 10.1073/pnas.1920403117

The high-affinity calcium sensor synaptotagmin-7 serves multiple roles in regulated exocytosis
journal, May 2018

  • MacDougall, Daniel D.; Lin, Zesen; Chon, Nara L.
  • Journal of General Physiology, Vol. 150, Issue 6
  • DOI: 10.1085/jgp.201711944

The 2018 biomembrane curvature and remodeling roadmap
journal, July 2018

  • Bassereau, Patricia; Jin, Rui; Baumgart, Tobias
  • Journal of Physics D: Applied Physics, Vol. 51, Issue 34
  • DOI: 10.1088/1361-6463/aacb98

SYT1-associated neurodevelopmental disorder: a case series
journal, August 2018


Methyl 3,4-Dihydroxybenzoate Induces Neural Stem Cells to Differentiate Into Cholinergic Neurons in vitro
journal, December 2018


Productive and Non-productive Pathways for Synaptotagmin 1 to Support Ca2+-Triggered Fast Exocytosis
journal, November 2017


Accessory and Central α-helices of Complexin Selectively Activate Ca2+ Triggering of Synaptic Exocytosis
journal, February 2018


NSF-mediated disassembly of on- and off-pathway SNARE complexes and inhibition by complexin
journal, July 2018


Multiple factors maintain assembled trans-SNARE complexes in the presence of NSF and αSNAP
journal, January 2019