Search Menu
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information
Search Scholarly Publications

Title: Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

Abstract

Arenibacter algicolastrain TG409 was isolated fromSkeletonema costatumand exhibits the ability to utilize polycyclic aromatic hydrocarbons as sole sources of carbon and energy. Here, we present the genome sequence of this strain, which is 5,550,230 bp with 4,722 genes and an average G+C content of 39.7%.

Authors:
 [1];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3] more »;  [3] « less
+ Show Author Affiliations
  1. School of Life Sciences, Heriot-Watt University, Edinburgh, United Kingdom
  2. Department of Microbiology, University of Georgia, Athens, Georgia, USA
  3. DOE Joint Genome Institute, Walnut Creek, California, USA
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1786482
Alternate Identifier(s):
OSTI ID: 1378995
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Published Article
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Name: Genome Announcements Journal Volume: 4 Journal Issue: 4; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., and Woyke, Tanja. Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. United States: N. p., 2016. Web. doi:10.1128/genomeA.00765-16.
Copy to clipboard
Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., & Woyke, Tanja. Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. United States. https://doi.org/10.1128/genomeA.00765-16
Copy to clipboard
Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., and Woyke, Tanja. Thu . "Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton". United States. https://doi.org/10.1128/genomeA.00765-16.
Copy to clipboard
@article{osti_1786482,
title = {Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton},
author = {Gutierrez, Tony and Whitman, William B. and Huntemann, Marcel and Copeland, Alex and Chen, Amy and Kyrpides, Nikos and Markowitz, Victor and Pillay, Manoj and Ivanova, Natalia and Mikhailova, Natalia and Ovchinnikova, Galina and Andersen, Evan and Pati, Amrita and Stamatis, Dimitrios and Reddy, T. B. K. and Ngan, Chew Yee and Chovatia, Mansi and Daum, Chris and Shapiro, Nicole and Cantor, Michael N. and Woyke, Tanja},
abstractNote = {Arenibacter algicolastrain TG409 was isolated fromSkeletonema costatumand exhibits the ability to utilize polycyclic aromatic hydrocarbons as sole sources of carbon and energy. Here, we present the genome sequence of this strain, which is 5,550,230 bp with 4,722 genes and an average G+C content of 39.7%.},
doi = {10.1128/genomeA.00765-16},
journal = {Genome Announcements},
number = 4,
volume = 4,
place = {United States},
year = {Thu Aug 25 00:00:00 EDT 2016},
month = {Thu Aug 25 00:00:00 EDT 2016}
}
Copy to clipboard
Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/genomeA.00765-16
Copyright Statement
Other availability
Search WorldCat Search WorldCat to find libraries that may hold this journal
Save / Share:
Export Metadata
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.

Works referenced in this record:

Polycyclic Aromatic Hydrocarbon Degradation of Phytoplankton-Associated Arenibacter spp. and Description of Arenibacter algicola sp. nov., an Aromatic Hydrocarbon-Degrading Bacterium
journal, November 2013

  • Gutierrez, Tony; Rhodes, Glenn; Mishamandani, Sara
  • Applied and Environmental Microbiology, Vol. 80, Issue 2
  • DOI: 10.1128/AEM.03104-13

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013

  • Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
  • Nature Methods, Vol. 10, Issue 6
  • DOI: 10.1038/nmeth.2474

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997

IMG ER: a system for microbial genome annotation expert review and curation
journal, June 2009

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
journal, October 2015

  • Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos
  • Standards in Genomic Sciences, Vol. 10, Issue 1
  • DOI: 10.1186/s40793-015-0077-y

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
journal, November 2007

  • Pruesse, E.; Quast, C.; Knittel, K.
  • Nucleic Acids Research, Vol. 35, Issue 21
  • DOI: 10.1093/nar/gkm864

Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010

  • Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
  • Nature Methods, Vol. 7, Issue 6
  • DOI: 10.1038/nmeth.1457

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
journal, October 2014

  • Reddy, T. B. K.; Thomas, Alex D.; Stamatis, Dimitri
  • Nucleic Acids Research, Vol. 43, Issue D1
  • DOI: 10.1093/nar/gku950
    Sort by:
    [ × clear filter / sort ]

    Similar Records in DOE PAGES and OSTI.GOV collections: