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Title: Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample

Journal Article · · Genome Announcements
 [1];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3]
  1. School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, United Kingdom
  2. Department of Microbiology, University of Georgia, Athens, Georgia, USA
  3. DOE Joint Genome Institute, Walnut Creek, California, USA

ABSTRACT Oceanicola sp. strain MCTG156(1a) was isolated from a phytoplankton net sample collected on the west coast of Scotland and selected based on its ability to degrade polycyclic aromatic hydrocarbons. Here, we present the genome sequence of this strain, which comprises 3,881,122 bp with 3,949 genes and an average G+C content of 62.7%.

Sponsoring Organization:
USDOE
Grant/Contract Number:
NONE; AC02-05CH11231
OSTI ID:
1608718
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 32 Vol. 5; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (10)

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data journal May 2013
IMG ER: a system for microbial genome annotation expert review and curation journal June 2009
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB journal November 2007
IMG/M: integrated genome and metagenome comparative data analysis system journal October 2016
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements journal October 2016
Oceanicola pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium journal April 2009
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains journal May 2015
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) journal October 2015