Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning
Abstract
Soil microbial communities play critical roles in ecosystem functioning and are likely altered by climate warming. However, so far, little is known about effects of warming on microbial functional gene expressions. Here, we applied functional gene array (GeoChip 3.0) to analyze cDNA reversely transcribed from total RNA to assess expressed functional genes in active soil microbial communities after nine years of experimental warming in a tallgrass prairie. Our results showed that warming significantly altered the community wide gene expressions. Specifically, expressed genes for degrading more recalcitrant carbon were stimulated by warming, likely linked to the plant community shift toward more C 4 species under warming and to decrease the long-term soil carbon stability. In addition, warming changed expressed genes in labile C degradation and N cycling in different directions (increase and decrease), possibly reflecting the dynamics of labile C and available N pools during sampling. However, the average abundances of expressed genes in phosphorus and sulfur cycling were all increased by warming, implying a stable trend of accelerated P and S processes which might be a mechanism to sustain higher plant growth. Furthermore, the expressed gene composition was closely related to both dynamic (e.g., soil moisture) and stable environmental attributesmore »
- Authors:
-
- Tsinghua Univ., Beijing (China). State Key Joint Lab. of Environment Simulation and Pollution Control, School of Environment; Univ. of Oklahoma, Norman, OK (United States). Inst. for Environmental Genomics; Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology
- Univ. of Oklahoma, Norman, OK (United States). Inst. for Environmental Genomics; Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology; Central South Univ., Changsha (China). School of Mineral Processing and Bioengineering
- Univ. of Oklahoma, Norman, OK (United States). Inst. for Environmental Genomics; Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology
- Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology
- Univ. of Oklahoma, Norman, OK (United States). Inst. for Environmental Genomics; Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology; Chinese Academy of Sciences (CAS), Beijing (China). Key Lab. of Environmental Biotechnology, Research Center for Eco-Environmental Sciences
- Tsinghua Univ., Beijing (China). State Key Joint Lab. of Environment Simulation and Pollution Control, School of Environment; Univ. of Oklahoma, Norman, OK (United States). Inst. for Environmental Genomics; Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth Science Division
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1378767
- Grant/Contract Number:
- AC02-05CH11231; SC0004601
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 7; Journal Issue: MAY; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; RNA; functional gene expression; global climate change; warming; GeoChip
Citation Formats
Xue, Kai, Xie, Jianping, Zhou, Aifen, Liu, Feifei, Li, Dejun, Wu, Liyou, Deng, Ye, He, Zhili, Van Nostrand, Joy D., Luo, Yiqi, and Zhou, Jizhong. Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning. United States: N. p., 2016.
Web. doi:10.3389/fmicb.2016.00668.
Xue, Kai, Xie, Jianping, Zhou, Aifen, Liu, Feifei, Li, Dejun, Wu, Liyou, Deng, Ye, He, Zhili, Van Nostrand, Joy D., Luo, Yiqi, & Zhou, Jizhong. Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning. United States. https://doi.org/10.3389/fmicb.2016.00668
Xue, Kai, Xie, Jianping, Zhou, Aifen, Liu, Feifei, Li, Dejun, Wu, Liyou, Deng, Ye, He, Zhili, Van Nostrand, Joy D., Luo, Yiqi, and Zhou, Jizhong. Fri .
"Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning". United States. https://doi.org/10.3389/fmicb.2016.00668. https://www.osti.gov/servlets/purl/1378767.
@article{osti_1378767,
title = {Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning},
author = {Xue, Kai and Xie, Jianping and Zhou, Aifen and Liu, Feifei and Li, Dejun and Wu, Liyou and Deng, Ye and He, Zhili and Van Nostrand, Joy D. and Luo, Yiqi and Zhou, Jizhong},
abstractNote = {Soil microbial communities play critical roles in ecosystem functioning and are likely altered by climate warming. However, so far, little is known about effects of warming on microbial functional gene expressions. Here, we applied functional gene array (GeoChip 3.0) to analyze cDNA reversely transcribed from total RNA to assess expressed functional genes in active soil microbial communities after nine years of experimental warming in a tallgrass prairie. Our results showed that warming significantly altered the community wide gene expressions. Specifically, expressed genes for degrading more recalcitrant carbon were stimulated by warming, likely linked to the plant community shift toward more C 4 species under warming and to decrease the long-term soil carbon stability. In addition, warming changed expressed genes in labile C degradation and N cycling in different directions (increase and decrease), possibly reflecting the dynamics of labile C and available N pools during sampling. However, the average abundances of expressed genes in phosphorus and sulfur cycling were all increased by warming, implying a stable trend of accelerated P and S processes which might be a mechanism to sustain higher plant growth. Furthermore, the expressed gene composition was closely related to both dynamic (e.g., soil moisture) and stable environmental attributes (e.g., C 4 leaf C or N content), indicating that RNA analyses could also capture certain stable trends in the long-term treatment. Overall, this study revealed the importance of elucidating functional gene expressions of soil microbial community in enhancing our understanding of ecosystem responses to warming.},
doi = {10.3389/fmicb.2016.00668},
journal = {Frontiers in Microbiology},
number = MAY,
volume = 7,
place = {United States},
year = {Fri May 06 00:00:00 EDT 2016},
month = {Fri May 06 00:00:00 EDT 2016}
}
Web of Science
Works referenced in this record:
Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms
journal, September 2012
- Tveit, Alexander; Schwacke, Rainer; Svenning, Mette M.
- The ISME Journal, Vol. 7, Issue 2
Experimental warming effects on the microbial community of a temperate mountain forest soil
journal, July 2011
- Schindlbacher, A.; Rodler, A.; Kuffner, M.
- Soil Biology and Biochemistry, Vol. 43, Issue 7
Rhizosphere effects on functional stability of microbial communities in conventional and organic soils following elevated temperature treatment
journal, February 2013
- Stockdale, E. A.; Banning, N. C.; Murphy, D. V.
- Soil Biology and Biochemistry, Vol. 57
Bacterial genome replication at subzero temperatures in permafrost
journal, August 2013
- Tuorto, Steven J.; Darias, Phillip; McGuinness, Lora R.
- The ISME Journal, Vol. 8, Issue 1
Sulfur fertilization improves nitrogen use efficiency in wheat by increasing nitrogen uptake
journal, August 2009
- Salvagiotti, Fernando; Castellarín, Julio M.; Miralles, Daniel J.
- Field Crops Research, Vol. 113, Issue 2
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
journal, July 2011
- Baldrian, Petr; Kolařík, Miroslav; Štursová, Martina
- The ISME Journal, Vol. 6, Issue 2
Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature
journal, March 2007
- Cookson, W. R.; Osman, M.; Marschner, P.
- Soil Biology and Biochemistry, Vol. 39, Issue 3
Interannual variability in responses of belowground net primary productivity (NPP) and NPP partitioning to long-term warming and clipping in a tallgrass prairie
journal, February 2012
- Xu, Xia; Niu, Shuli; Sherry, Rebecca A.
- Global Change Biology, Vol. 18, Issue 5
Sulfate assimilation and glutathione synthesis in C4 plants
journal, November 2005
- Kopriva, Stanislav; Koprivova, Anna
- Photosynthesis Research, Vol. 86, Issue 3
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
journal, April 2010
- He, Zhili; Deng, Ye; Van Nostrand, Joy D.
- The ISME Journal, Vol. 4, Issue 9
Microbial community gene expression in ocean surface waters
journal, March 2008
- Frias-Lopez, J.; Shi, Y.; Tyson, G. W.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 10
Global Warming and Terrestrial Ecosystems: A Conceptual Framework for Analysis
journal, January 2000
- Shaver, Gaius R.; Canadell, Josep; Chapin, F. S.
- BioScience, Vol. 50, Issue 10
Metagenomic Analyses: Past and Future Trends
journal, December 2010
- Simon, Carola; Daniel, Rolf
- Applied and Environmental Microbiology, Vol. 77, Issue 4
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling
journal, April 2015
- Franzosa, Eric A.; Hsu, Tiffany; Sirota-Madi, Alexandra
- Nature Reviews Microbiology, Vol. 13, Issue 6
Effect of Sulfur Content of Straws on Rates of Decomposition and Plant Growth1
journal, January 1966
- Stewart, B. A.; Porter, L. K.; Viets, F. G.
- Soil Science Society of America Journal, Vol. 30, Issue 3
Long-term warming alters the composition of Arctic soil microbial communities
journal, April 2012
- Deslippe, Julie R.; Hartmann, Martin; Simard, Suzanne W.
- FEMS Microbiology Ecology, Vol. 82, Issue 2
Compositional and Functional Shifts in Microbial Communities Due to Soil Warming
journal, January 1997
- Zogg, Gregory P.; Zak, Donald R.; Ringelberg, David B.
- Soil Science Society of America Journal, Vol. 61, Issue 2
Nitrogen regulation of the climate–carbon feedback: evidence from a long-term global change experiment
journal, November 2010
- Niu, Shuli; Sherry, Rebecca A.; Zhou, Xuhui
- Ecology, Vol. 91, Issue 11
Soil microbial community changes and their linkages with ecosystem carbon exchange under asymmetrically diurnal warming
journal, June 2011
- Zhang, Naili; Xia, Jianyang; Yu, Xingjun
- Soil Biology and Biochemistry
Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments
journal, September 2011
- Yergeau, Etienne; Bokhorst, Stef; Kang, Sanghoon
- The ISME Journal, Vol. 6, Issue 3
Lagged effects of experimental warming and doubled precipitation on annual and seasonal aboveground biomass production in a tallgrass prairie
journal, December 2008
- Sherry, Rebecca A.; Weng, Ensheng; Arnone Iii, John A.
- Global Change Biology, Vol. 14, Issue 12
Consistent proportional increments in responses of belowground net primary productivity to long-term warming and clipping at various soil depths in a tallgrass prairie
journal, November 2013
- Xu, Xia; Luo, Yiqi; Shi, Zheng
- Oecologia, Vol. 174, Issue 3
Application of the metabolic enthalpy change in studies of soil microbial activity
journal, August 2000
- Barros, N.; Feijóo, S.; Fernández, S.
- Thermochimica Acta, Vol. 356, Issue 1-2
Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO 2 and warming in an Australian native grassland soil : Climate change effects on microbial communities
journal, October 2012
- Hayden, Helen L.; Mele, Pauline M.; Bougoure, Damian S.
- Environmental Microbiology, Vol. 14, Issue 12
Responses of soil microbial processes and community structure to tillage events and implications for soil quality
journal, June 2003
- Jackson, L. E.; Calderon, F. J.; Steenwerth, K. L.
- Geoderma, Vol. 114, Issue 3-4
Discovery of Glycoside Hydrolase Enzymes in an Avicel-Adapted Forest Soil Fungal Community by a Metatranscriptomic Approach
journal, February 2013
- Takasaki, Kazuto; Miura, Takamasa; Kanno, Manabu
- PLoS ONE, Vol. 8, Issue 2
Plant community structure regulates responses of prairie soil respiration to decadal experimental warming
journal, June 2015
- Xu, Xia; Shi, Zheng; Li, Dejun
- Global Change Biology, Vol. 21, Issue 10
Terrestrial carbon-cycle feedback to climate warming: experimental evidence on plant regulation and impacts of biofuel feedstock harvest
journal, February 2009
- Luo, Yiqi; Sherry, Rebecca; Zhou, Xuhui
- GCB Bioenergy, Vol. 1, Issue 1
Direct and indirect effects of experimental warming on ecosystem carbon processes in a tallgrass prairie: WARMING AND C PROCESSES IN TALLGRASS PRAIRIE
journal, April 2005
- Wan, Shiqiang; Hui, Dafeng; Wallace, Linda
- Global Biogeochemical Cycles, Vol. 19, Issue 2
Experimental warming and clipping altered litter carbon and nitrogen dynamics in a tallgrass prairie
journal, August 2010
- Cheng, Xiaoli; Luo, Yiqi; Su, Bo
- Agriculture, Ecosystems & Environment, Vol. 138, Issue 3-4
Microbial contributions to climate change through carbon cycle feedbacks
journal, July 2008
- Bardgett, Richard D.; Freeman, Chris; Ostle, Nicholas J.
- The ISME Journal, Vol. 2, Issue 8
Phosphorus responses of C 3 and C 4 species
journal, January 1996
- Halsted, Marilou; Lynch, Jonathan
- Journal of Experimental Botany, Vol. 47, Issue 4
Short-term competition between crop plants and soil microbes for inorganic N fertilizer
journal, February 2010
- Inselsbacher, Erich; Hinko-Najera Umana, Nina; Stange, Florian C.
- Soil Biology and Biochemistry, Vol. 42, Issue 2
Impacts of warming and fertilization on nitrogen-fixing microbial communities in the Canadian High Arctic
journal, June 2005
- Deslippe, Julie R.; Egger, Keith N.; Henry, Greg H. R.
- FEMS Microbiology Ecology, Vol. 53, Issue 1
Acclimatization of soil respiration to warming in a tall grass prairie
journal, October 2001
- Luo, Yiqi; Wan, Shiqiang; Hui, Dafeng
- Nature, Vol. 413, Issue 6856
Fifteen years of climate change manipulations alter soil microbial communities in a subarctic heath ecosystem
journal, January 2007
- Rinnan, Riikka; Michelsen, Anders; BÅÅTh, Erland
- Global Change Biology, Vol. 13, Issue 1
Plant nitrogen concentration, use efficiency, and contents in a tallgrass prairie ecosystem under experimental warming
journal, October 2005
- An, Yuan; Wan, Shiqiang; Zhou, Xuhui
- Global Change Biology, Vol. 11, Issue 10
A Difference in N Use Efficiency in C3 and C4 Plants and its Implications in Adaptation and Evolution1
journal, January 1978
- Brown, R. H.
- Crop Science, Vol. 18, Issue 1
Effects of Phosphorus Deficiency on Growth and Metabolism of Soybean
journal, June 1950
- Eaton, Scott V.
- Botanical Gazette, Vol. 111, Issue 4
Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing
journal, June 2012
- Kuffner, Melanie; Hai, Brigitte; Rattei, Thomas
- FEMS Microbiology Ecology, Vol. 82, Issue 3
Exploring the metabolic state of microorganisms using metabolomics
journal, November 2011
- Merlo, Me; Jankevics, A.; Takano, E.
- Bioanalysis, Vol. 3, Issue 21
Regulatory coupling of nitrate and sulfate assimilation pathways in cultured tobacco cells
journal, November 1980
- Reuveny, Z.; Dougall, D. K.; Trinity, P. M.
- Proceedings of the National Academy of Sciences, Vol. 77, Issue 11
Effect of warming and drought on grassland microbial communities
journal, March 2011
- Sheik, Cody S.; Beasley, William Howard; Elshahed, Mostafa S.
- The ISME Journal, Vol. 5, Issue 10
Stoichiometric response of nitrogen-fixing and non-fixing dicots to manipulations of CO2, nitrogen, and diversity
journal, November 2006
- Novotny, Amy M.; Schade, John D.; Hobbie, Sarah E.
- Oecologia, Vol. 151, Issue 4
Rapid disruption of nitrogen metabolism and nitrate transport in spinach plants deprived of sulphate
journal, January 2001
- Prosser, I. M.
- Journal of Experimental Botany, Vol. 52, Issue 354
Soil organic matter dynamics in a North America tallgrass prairie after 9 yr of experimental warming
journal, January 2011
- Cheng, X.; Luo, Y.; Xu, X.
- Biogeosciences, Vol. 8, Issue 6
Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules
journal, February 2007
- Anderson, Ian C.; Parkin, Pamela I.
- Journal of Microbiological Methods, Vol. 68, Issue 2
Development of a Common Oligonucleotide Reference Standard for Microarray Data Normalization and Comparison across Different Microbial Communities
journal, December 2009
- Liang, Y.; He, Z.; Wu, L.
- Applied and Environmental Microbiology, Vol. 76, Issue 4
Global carbon dioxide levels near worrisome milestone
journal, April 2013
- Monastersky, Richard
- Nature, Vol. 497, Issue 7447
Long-term experimental warming decreased labile soil organic carbon in a tallgrass prairie
journal, May 2012
- Xu, Xia; Sherry, Rebecca A.; Niu, Shuli
- Plant and Soil, Vol. 361, Issue 1-2
Increases in nitrogen uptake rather than nitrogen-use efficiency support higher rates of temperate forest productivity under elevated CO2
journal, August 2007
- Finzi, A. C.; Norby, R. J.; Calfapietra, C.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 35
Microbial biomass, functional capacity, and community structure after 12 years of soil warming
journal, November 2008
- Frey, S. D.; Drijber, R.; Smith, H.
- Soil Biology and Biochemistry, Vol. 40, Issue 11
Soil microbial responses to experimental warming and clipping in a tallgrass prairie
journal, February 2005
- Zhang, W.; Parker, K. M.; Luo, Y.
- Global Change Biology, Vol. 11, Issue 2
Efficiency of Nitrogen Utilization in C3 and C4 Cereals
journal, October 1994
- Oaks, A.
- Plant Physiology, Vol. 106, Issue 2
Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification
journal, July 2006
- Wu, L.; Liu, X.; Schadt, C. W.
- Applied and Environmental Microbiology, Vol. 72, Issue 7
Nitrogen-use efficiency: trade-offs between N productivity and mean residence time at organ, plant and population levels
journal, August 2004
- Silla, F.; Escudero, A.
- Functional Ecology, Vol. 18, Issue 4
Forage Quality Responses of C3 and C4 Perennial Grasses to Shade
journal, January 1993
- Kephart, Kevin D.; Buxton, Dwayne R.
- Crop Science, Vol. 33, Issue 4
Global patterns in belowground communities
journal, November 2009
- Fierer, Noah; Strickland, Michael S.; Liptzin, Daniel
- Ecology Letters, Vol. 12, Issue 11
Dynamics of resistant soil carbon of Midwestern agricultural soils measured by naturally occurring 14C abundance
journal, December 2001
- Paul, E. A.; Collins, H. P.; Leavitt, S. W.
- Geoderma, Vol. 104, Issue 3-4
Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands
journal, January 2013
- Peralta, Rita M.; Ahn, Changwoo; Gillevet, Patrick M.
- Science of The Total Environment, Vol. 443
Stoichiometric response of nitrogen-fixing and non-fixing dicots to manipulations of CO2, nitrogen, and diversity
journal, November 2006
- Novotny, Amy M.; Schade, John D.; Hobbie, Sarah E.
- Oecologia, Vol. 151, Issue 4
Consistent proportional increments in responses of belowground net primary productivity to long-term warming and clipping at various soil depths in a tallgrass prairie
journal, November 2013
- Xu, Xia; Luo, Yiqi; Shi, Zheng
- Oecologia, Vol. 174, Issue 3
Seasonal and diurnal soil respiration dynamics under different land management practices in the sub-tropical highland agroecology of Ethiopia
journal, November 2022
- Fekadu, Genetu; Adgo, Enyew; Meshesha, Derege Tsegaye
- Environmental Monitoring and Assessment, Vol. 195, Issue 1
Sulfate assimilation and glutathione synthesis in C4 plants
journal, November 2005
- Kopriva, Stanislav; Koprivova, Anna
- Photosynthesis Research, Vol. 86, Issue 3
Experimental warming and clipping altered litter carbon and nitrogen dynamics in a tallgrass prairie
journal, August 2010
- Cheng, Xiaoli; Luo, Yiqi; Su, Bo
- Agriculture, Ecosystems & Environment, Vol. 138, Issue 3-4
Sulfur fertilization improves nitrogen use efficiency in wheat by increasing nitrogen uptake
journal, August 2009
- Salvagiotti, Fernando; Castellarín, Julio M.; Miralles, Daniel J.
- Field Crops Research, Vol. 113, Issue 2
Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules
journal, February 2007
- Anderson, Ian C.; Parkin, Pamela I.
- Journal of Microbiological Methods, Vol. 68, Issue 2
Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands
journal, January 2013
- Peralta, Rita M.; Ahn, Changwoo; Gillevet, Patrick M.
- Science of The Total Environment, Vol. 443
Microbial biomass, functional capacity, and community structure after 12 years of soil warming
journal, November 2008
- Frey, S. D.; Drijber, R.; Smith, H.
- Soil Biology and Biochemistry, Vol. 40, Issue 11
Short-term competition between crop plants and soil microbes for inorganic N fertilizer
journal, February 2010
- Inselsbacher, Erich; Hinko-Najera Umana, Nina; Stange, Florian C.
- Soil Biology and Biochemistry, Vol. 42, Issue 2
Experimental warming effects on the microbial community of a temperate mountain forest soil
journal, July 2011
- Schindlbacher, A.; Rodler, A.; Kuffner, M.
- Soil Biology and Biochemistry, Vol. 43, Issue 7
Soil microbial community changes and their linkages with ecosystem carbon exchange under asymmetrically diurnal warming
journal, June 2011
- Zhang, Naili; Xia, Jianyang; Yu, Xingjun
- Soil Biology and Biochemistry
In search of biological indicators for soil health and disease suppression
journal, August 2000
- van Bruggen, A. H. C.; Semenov, A. M.
- Applied Soil Ecology, Vol. 15, Issue 1
Direct and indirect effects of experimental warming on ecosystem carbon processes in a tallgrass prairie: WARMING AND C PROCESSES IN TALLGRASS PRAIRIE
journal, April 2005
- Wan, Shiqiang; Hui, Dafeng; Wallace, Linda
- Global Biogeochemical Cycles, Vol. 19, Issue 2
Acclimatization of soil respiration to warming in a tall grass prairie
journal, October 2001
- Luo, Yiqi; Wan, Shiqiang; Hui, Dafeng
- Nature, Vol. 413, Issue 6856
Global carbon dioxide levels near worrisome milestone
journal, April 2013
- Monastersky, Richard
- Nature, Vol. 497, Issue 7447
Microbial contributions to climate change through carbon cycle feedbacks
journal, July 2008
- Bardgett, Richard D.; Freeman, Chris; Ostle, Nicholas J.
- The ISME Journal, Vol. 2, Issue 8
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
journal, April 2010
- He, Zhili; Deng, Ye; Van Nostrand, Joy D.
- The ISME Journal, Vol. 4, Issue 9
Effect of warming and drought on grassland microbial communities
journal, March 2011
- Sheik, Cody S.; Beasley, William Howard; Elshahed, Mostafa S.
- The ISME Journal, Vol. 5, Issue 10
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
journal, July 2011
- Baldrian, Petr; Kolařík, Miroslav; Štursová, Martina
- The ISME Journal, Vol. 6, Issue 2
Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms
journal, September 2012
- Tveit, Alexander; Schwacke, Rainer; Svenning, Mette M.
- The ISME Journal, Vol. 7, Issue 2
Bacterial genome replication at subzero temperatures in permafrost
journal, August 2013
- Tuorto, Steven J.; Darias, Phillip; McGuinness, Lora R.
- The ISME Journal, Vol. 8, Issue 1
Terrestrial ecosystem carbon dynamics and climate feedbacks
journal, January 2008
- Heimann, Martin; Reichstein, Markus
- Nature, Vol. 451, Issue 7176
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
journal, November 2011
- Mackelprang, Rachel; Waldrop, Mark P.; DeAngelis, Kristen M.
- Nature, Vol. 480, Issue 7377
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling
journal, April 2015
- Franzosa, Eric A.; Hsu, Tiffany; Sirota-Madi, Alexandra
- Nature Reviews Microbiology, Vol. 13, Issue 6
Microbial community gene expression in ocean surface waters
journal, March 2008
- Frias-Lopez, J.; Shi, Y.; Tyson, G. W.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 10
Effects of Phosphorus Deficiency on Growth and Metabolism of Soybean
journal, June 1950
- Eaton, Scott V.
- Botanical Gazette, Vol. 111, Issue 4
Rapid disruption of nitrogen metabolism and nitrate transport in spinach plants deprived of sulphate
journal, January 2001
- Prosser, I. M.
- Journal of Experimental Botany, Vol. 52, Issue 354
Regulation of Sulfate Assimilation by Nitrogen in Arabidopsis
journal, March 2000
- Koprivova, Anna; Suter, Marianne; den Camp, Roel Op
- Plant Physiology, Vol. 122, Issue 3
Influence of Phosphorus Nutrition on Growth and Carbon Partitioning in Glycine max
journal, January 1989
- Fredeen, Arthur L.; Rao, I. Madhusudana; Terry, Norman
- Plant Physiology, Vol. 89, Issue 1
Plant community structure regulates responses of prairie soil respiration to decadal experimental warming
journal, June 2015
- Xu, Xia; Shi, Zheng; Li, Dejun
- Global Change Biology, Vol. 21, Issue 10
Nitrogen-use efficiency: trade-offs between N productivity and mean residence time at organ, plant and population levels
journal, August 2004
- Silla, F.; Escudero, A.
- Functional Ecology, Vol. 18, Issue 4
Soil microbial responses to experimental warming and clipping in a tallgrass prairie
journal, February 2005
- Zhang, W.; Parker, K. M.; Luo, Y.
- Global Change Biology, Vol. 11, Issue 2
Plant nitrogen concentration, use efficiency, and contents in a tallgrass prairie ecosystem under experimental warming
journal, October 2005
- An, Yuan; Wan, Shiqiang; Zhou, Xuhui
- Global Change Biology, Vol. 11, Issue 10
Fifteen years of climate change manipulations alter soil microbial communities in a subarctic heath ecosystem
journal, January 2007
- Rinnan, Riikka; Michelsen, Anders; BÅÅTh, Erland
- Global Change Biology, Vol. 13, Issue 1
Lagged effects of experimental warming and doubled precipitation on annual and seasonal aboveground biomass production in a tallgrass prairie
journal, December 2008
- Sherry, Rebecca A.; Weng, Ensheng; Arnone Iii, John A.
- Global Change Biology, Vol. 14, Issue 12
Interannual variability in responses of belowground net primary productivity (NPP) and NPP partitioning to long-term warming and clipping in a tallgrass prairie
journal, February 2012
- Xu, Xia; Niu, Shuli; Sherry, Rebecca A.
- Global Change Biology, Vol. 18, Issue 5
Global patterns in belowground communities
journal, November 2009
- Fierer, Noah; Strickland, Michael S.; Liptzin, Daniel
- Ecology Letters, Vol. 12, Issue 11
Long-term warming alters the composition of Arctic soil microbial communities
journal, April 2012
- Deslippe, Julie R.; Hartmann, Martin; Simard, Suzanne W.
- FEMS Microbiology Ecology, Vol. 82, Issue 2
Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing
journal, June 2012
- Kuffner, Melanie; Hai, Brigitte; Rattei, Thomas
- FEMS Microbiology Ecology, Vol. 82, Issue 3
Terrestrial carbon-cycle feedback to climate warming: experimental evidence on plant regulation and impacts of biofuel feedstock harvest
journal, February 2009
- Luo, Yiqi; Sherry, Rebecca; Zhou, Xuhui
- GCB Bioenergy, Vol. 1, Issue 1
Decomposition Rates and Residue-Colonizing Microbial Communities of Bacillus thuringiensis Insecticidal Protein Cry3Bb-Expressing (Bt) and Non-Bt Corn Hybrids in the Field
journal, December 2010
- Xue, Kai; Serohijos, Raquel C.; Devare, Medha
- Applied and Environmental Microbiology, Vol. 77, Issue 3
Development of an Environmental Functional Gene Microarray for Soil Microbial Communities
journal, September 2010
- McGrath, K. C.; Mondav, R.; Sintrajaya, R.
- Applied and Environmental Microbiology, Vol. 76, Issue 21
Phylogenetic Clustering of Soil Microbial Communities by 16S rRNA but Not 16S rRNA Genes
journal, January 2012
- DeAngelis, Kristen M.; Firestone, Mary K.
- Applied and Environmental Microbiology, Vol. 78, Issue 7
Nucleic Acid (DNA, RNA) Quantification and RNA/DNA Ratio Determination in Marine Sediments: Comparison of Spectrophotometric, Fluorometric, and HighPerformance Liquid Chromatography Methods and Estimation of Detrital DNA
journal, September 1998
- Dell’Anno, A.; Fabiano, M.; Duineveld, G. C. A.
- Applied and Environmental Microbiology, Vol. 64, Issue 9
Simultaneous Recovery of RNA and DNA from Soils and Sediments
journal, October 2001
- Hurt, R. A.; Qiu, X.; Wu, L.
- Applied and Environmental Microbiology, Vol. 67, Issue 10
mRNA-Based Parallel Detection of Active Methanotroph Populations by Use of a Diagnostic Microarray
journal, February 2006
- Bodrossy, L.; Stralis-Pavese, N.; Konrad-Koszler, M.
- Applied and Environmental Microbiology, Vol. 72, Issue 2
Discovery of Glycoside Hydrolase Enzymes in an Avicel-Adapted Forest Soil Fungal Community by a Metatranscriptomic Approach
journal, February 2013
- Takasaki, Kazuto; Miura, Takamasa; Kanno, Manabu
- PLoS ONE, Vol. 8, Issue 2
Nitrogen regulation of the climate–carbon feedback: evidence from a long-term global change experiment
journal, November 2010
- Niu, Shuli; Sherry, Rebecca A.; Zhou, Xuhui
- Ecology, Vol. 91, Issue 11
Soil organic matter dynamics in a North America tallgrass prairie after 9 yr of experimental warming
journal, January 2011
- Cheng, X.; Luo, Y.; Xu, X.
- Biogeosciences, Vol. 8, Issue 6
Works referencing / citing this record:
Functional diversity and redundancy across fish gut, sediment and water bacterial communities
journal, July 2017
- Escalas, Arthur; Troussellier, Marc; Yuan, Tong
- Environmental Microbiology, Vol. 19, Issue 8
Elevated CO2 and Warming Altered Grassland Microbial Communities in Soil Top-Layers
journal, August 2018
- Yu, Hao; Deng, Ye; He, Zhili
- Frontiers in Microbiology, Vol. 9