Evaluating the lingering effect of livestock grazing on functional potentials of microbial communities in Tibetan grassland soils
Abstract
Background and aims: Livestock grazing is a widely practiced land-use regime that can impose lingering effects on global biogeochemical cycles. Yet, elucidating the mechanisms of related eco-processes, which are largely mediated by the microbial community, remains challenging. Methods: In this work, we collected soil samples from two Tibetan grassland sites subjected to grazing in winter followed by a 3-month recovery. We then evaluated functional potentials of microbial communities via a metagenomic tool known as GeoChip 4.0. Results: Significant alterations were detected in post-grazing grassland soils, and further analysis showed that plant diversity was the best indicator of alterations in functional potentials. Relative abundances of labile C degradation genes decreased at the 3400-m site, but those of recalcitrant C degradation genes increased, which could be explained by the higher soil recalcitrant C input owing to their being substantially more forbs species at this site. Nitrification genes decreased at both sites, probably owing to increased soil moisture conducive to oxygen-limiting conditions. Relative abundance of denitrification genes increased at the 3200-m site, concomitant with increased N2O emissions. Conclusions: These findings demonstrated that functional gene compositions of the microbial community were altered in post-grazing grassland soils, and linked to soil biogeochemical processes.
- Authors:
-
- Tsinghua Univ., Beijing (China)
- Chinese Academy of Sciences (CAS), Beijing (China)
- Tsinghua Univ., Beijing (China); Univ. of Oklahoma, Norman, OK (United States)
- Chinese Academy of Sciences (CAS), Xining (China)
- Chinese Academy of Sciences (CAS), Xining (China); Chinese Academy of Sciences (CAS), Lanzhou (China)
- Chinese Academy of Sciences (CAS), Chengdu (China)
- Tsinghua Univ., Beijing (China); Univ. of Oklahoma, Norman, OK (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
- OSTI Identifier:
- 1567066
- Grant/Contract Number:
- AC02-05CH11231; SC0004601
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Plant and Soil
- Additional Journal Information:
- Journal Volume: 407; Journal Issue: 1-2; Journal ID: ISSN 0032-079X
- Publisher:
- Springer
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Microbial functional potential; Tibetan grassland; Post-winter grazing; GeoChip
Citation Formats
Wang, Mengmeng, Wang, Shiping, Wu, Linwei, Xu, Depeng, Lin, Qiaoyan, Hu, Yigang, Li, Xiangzhen, Zhou, Jizhong, and Yang, Yunfeng. Evaluating the lingering effect of livestock grazing on functional potentials of microbial communities in Tibetan grassland soils. United States: N. p., 2016.
Web. doi:10.1007/s11104-016-2897-y.
Wang, Mengmeng, Wang, Shiping, Wu, Linwei, Xu, Depeng, Lin, Qiaoyan, Hu, Yigang, Li, Xiangzhen, Zhou, Jizhong, & Yang, Yunfeng. Evaluating the lingering effect of livestock grazing on functional potentials of microbial communities in Tibetan grassland soils. United States. https://doi.org/10.1007/s11104-016-2897-y
Wang, Mengmeng, Wang, Shiping, Wu, Linwei, Xu, Depeng, Lin, Qiaoyan, Hu, Yigang, Li, Xiangzhen, Zhou, Jizhong, and Yang, Yunfeng. Tue .
"Evaluating the lingering effect of livestock grazing on functional potentials of microbial communities in Tibetan grassland soils". United States. https://doi.org/10.1007/s11104-016-2897-y. https://www.osti.gov/servlets/purl/1567066.
@article{osti_1567066,
title = {Evaluating the lingering effect of livestock grazing on functional potentials of microbial communities in Tibetan grassland soils},
author = {Wang, Mengmeng and Wang, Shiping and Wu, Linwei and Xu, Depeng and Lin, Qiaoyan and Hu, Yigang and Li, Xiangzhen and Zhou, Jizhong and Yang, Yunfeng},
abstractNote = {Background and aims: Livestock grazing is a widely practiced land-use regime that can impose lingering effects on global biogeochemical cycles. Yet, elucidating the mechanisms of related eco-processes, which are largely mediated by the microbial community, remains challenging. Methods: In this work, we collected soil samples from two Tibetan grassland sites subjected to grazing in winter followed by a 3-month recovery. We then evaluated functional potentials of microbial communities via a metagenomic tool known as GeoChip 4.0. Results: Significant alterations were detected in post-grazing grassland soils, and further analysis showed that plant diversity was the best indicator of alterations in functional potentials. Relative abundances of labile C degradation genes decreased at the 3400-m site, but those of recalcitrant C degradation genes increased, which could be explained by the higher soil recalcitrant C input owing to their being substantially more forbs species at this site. Nitrification genes decreased at both sites, probably owing to increased soil moisture conducive to oxygen-limiting conditions. Relative abundance of denitrification genes increased at the 3200-m site, concomitant with increased N2O emissions. Conclusions: These findings demonstrated that functional gene compositions of the microbial community were altered in post-grazing grassland soils, and linked to soil biogeochemical processes.},
doi = {10.1007/s11104-016-2897-y},
journal = {Plant and Soil},
number = 1-2,
volume = 407,
place = {United States},
year = {Tue Apr 19 00:00:00 EDT 2016},
month = {Tue Apr 19 00:00:00 EDT 2016}
}
Web of Science
Figures / Tables:
Works referenced in this record:
Contrasting soil microbial community functional structures in two major landscapes of the Tibetan alpine meadow
journal, July 2014
- Chu, Houjuan; Wang, Shiping; Yue, Haowei
- MicrobiologyOpen, Vol. 3, Issue 5
Effects of cattle husbandry on abundance and activity of methanogenic archaea in upland soils
journal, July 2007
- Radl, Viviane; Gattinger, Andreas; Chroňáková, Alica
- The ISME Journal, Vol. 1, Issue 5
Mineralization of s-triazine herbicides by a newly isolated Nocardioides species strain DN36
journal, February 2010
- Satsuma, Koji
- Applied Microbiology and Biotechnology, Vol. 86, Issue 5
Modulation of Diversity by Grazing and Mowing in Native Tallgrass Prairie
journal, May 1998
- Collins, S. L.
- Science, Vol. 280, Issue 5364
Altered soil microbial community at elevated CO2 leads to loss of soil carbon
journal, March 2007
- Carney, K. M.; Hungate, B. A.; Drake, B. G.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 12
Grazing effects on denitrification in a soil under pasture during two contrasting seasons
journal, June 1999
- Luo, J.; Tillman, R. W.; Ball, P. R.
- Soil Biology and Biochemistry, Vol. 31, Issue 6
Biotic homogenization: a few winners replacing many losers in the next mass extinction
journal, November 1999
- McKinney, Michael L.; Lockwood, Julie L.
- Trends in Ecology & Evolution, Vol. 14, Issue 11
Element interactions limit soil carbon storage
journal, April 2006
- van Groenigen, K. -J.; Six, J.; Hungate, B. A.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 17
The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry: Effects of northward soil transplant and cropping
journal, February 2014
- Liu, Shanshan; Wang, Feng; Xue, Kai
- Environmental Microbiology, Vol. 17, Issue 3
The microbial gene diversity along an elevation gradient of the Tibetan grassland
journal, August 2013
- Yang, Yunfeng; Gao, Ying; Wang, Shiping
- The ISME Journal, Vol. 8, Issue 2
Benthic microalgal diversity enhanced by spatial heterogeneity of grazing
journal, February 2000
- Sommer, U.
- Oecologia, Vol. 122, Issue 2
Effects of grazing and experimental warming on DOC concentrations in the soil solution on the Qinghai-Tibet plateau
journal, December 2009
- Luo, Caiyun; Xu, Guangping; Wang, Yanfen
- Soil Biology and Biochemistry, Vol. 41, Issue 12
Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping
journal, April 2014
- Zhao, Mengxin; Xue, Kai; Wang, Feng
- The ISME Journal, Vol. 8, Issue 10
Biodegradation and Rhodococcus – masters of catabolic versatility
journal, June 2005
- Larkin, Michael J.; Kulakov, Leonid A.; Allen, Christopher CR
- Current Opinion in Biotechnology, Vol. 16, Issue 3
2,4-D impact on bacterial communities, and the activity and genetic potential of 2,4-D degrading communities in soil: Impact and degradation of 2,4-D
journal, December 2006
- Gonod, Laure Vieublé; Martin-Laurent, Fabrice; Chenu, Claire
- FEMS Microbiology Ecology, Vol. 58, Issue 3
Linkages between microbial functional potential and wastewater constituents in large-scale membrane bioreactors for municipal wastewater treatment
journal, June 2014
- Sun, Yanmei; Shen, Yue-xiao; Liang, Peng
- Water Research, Vol. 56
Grazing intensity alters soil respiration in an alpine meadow on the Tibetan plateau
journal, February 2004
- Cao, Guangmin; Tang, Yanhong; Mo, Wenhong
- Soil Biology and Biochemistry, Vol. 36, Issue 2
High fluxes but different patterns of nitrous oxide and carbon dioxide emissions from soil in a cattle overwintering area
journal, May 2007
- Hynšt, Jaroslav; Šimek, Miloslav; Brůček, Petr
- Agriculture, Ecosystems & Environment, Vol. 120, Issue 2-4
PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR
journal, July 1996
- Ahn, S.
- Nucleic Acids Research, Vol. 24, Issue 13
Large losses of soil C and N from soil profiles under pasture in New Zealand during the past 20 years
journal, June 2007
- Schipper, L. A.; Baisden, W. T.; Parfitt, R. L.
- Global Change Biology, Vol. 13, Issue 6
Identifying response groups of soil nitrifiers and denitrifiers to grazing and associated soil environmental drivers in Tibetan alpine meadows
journal, October 2014
- Xie, Zhen; Le Roux, Xavier; Wang, Chuanpei
- Soil Biology and Biochemistry, Vol. 77
Gains and losses in C and N stocks of New Zealand pasture soils depend on land use
journal, December 2010
- Schipper, L. A.; Parfitt, R. L.; Ross, C.
- Agriculture, Ecosystems & Environment, Vol. 139, Issue 4
Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland
journal, November 2012
- Yang, Yunfeng; Wu, Linwei; Lin, Qiaoyan
- Global Change Biology, Vol. 19, Issue 2
Experimental Warming, not Grazing, Decreases Rangeland Quality on the Tibetan Plateau
journal, March 2007
- Klein, Julia A.; Harte, John; Zhao, Xin-Quan
- Ecological Applications, Vol. 17, Issue 2
Nitrogen Balance in Urine-affected Areas of a New Zealand Pasture1
journal, January 1979
- Ball, Roger; Keeney, D. R.; Thoebald, P. W.
- Agronomy Journal, Vol. 71, Issue 2
Nodule Symbiosis of Invasive Mimosa pigra in Australia and in Ancestral Habitats: A Comparative Analysis
journal, April 2006
- Parker, Matthew A.; Wurtz, Anna K.; Paynter, Quentin
- Biological Invasions, Vol. 9, Issue 2
Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities
journal, December 2012
- Rodrigues, J. L. M.; Pellizari, V. H.; Mueller, R.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 3
Fluxes of CO2, CH4, and N2O in an alpine meadow affected by yak excreta on the Qinghai-Tibetan plateau during summer grazing periods
journal, April 2009
- Lin, Xingwu; Wang, Shiping; Ma, Xiuzhi
- Soil Biology and Biochemistry, Vol. 41, Issue 4
Soil Properties and Plant Community Changes along a Goat Grazing Intensity Gradient in an Open Canopy Oak Forest
journal, December 2013
- Lempesi, Aimilia; Kyriazopoulos, Apostolos P.; Orfanoudakis, Michail
- Notulae Botanicae Horti Agrobotanici Cluj-Napoca, Vol. 41, Issue 2
Ecological and evolutionary consequences of biotic homogenization
journal, January 2004
- Olden, Julian D.; LeRoy Poff, N.; Douglas, Marlis R.
- Trends in Ecology & Evolution, Vol. 19, Issue 1
Soil Properties and their Spatial Pattern in a Degraded Sandy Grassland under Post-grazing Restoration, Inner Mongolia, Northern China
journal, July 2006
- Su, Yong Zhong; Li, Yu Lin; Zhao, Ha Lin
- Biogeochemistry, Vol. 79, Issue 3
Grazing intensity affected spatial patterns of vegetation and soil fertility in a desert steppe
journal, August 2010
- Lin, Yang; Hong, Mei; Han, Guodong
- Agriculture, Ecosystems & Environment, Vol. 138, Issue 3-4
Isozymes of Lignin Peroxidase and Manganese(II) Peroxidase from the White-Rot Basidiomycete Trametes versicolor
journal, January 1993
- Johansson, T.; Nyman, P. O.
- Archives of Biochemistry and Biophysics, Vol. 300, Issue 1
Can Plants Stimulate soil Microbes and Their own Nutrient Supply? Evidence from a Grazing Tolerant Grass
journal, September 2001
- Hamilton, E. William; Frank, Douglas A.
- Ecology, Vol. 82, Issue 9
A meta-analysis of changes in bacterial and archaeal communities with time
journal, April 2013
- Shade, Ashley; Gregory Caporaso, J.; Handelsman, Jo
- The ISME Journal, Vol. 7, Issue 8
Herbivore-Mediated Linkages Between Aboveground and Belowground Communities
journal, September 2003
- Bardgett, Richard D.; Wardle, David A.
- Ecology, Vol. 84, Issue 9
Detrended correspondence analysis: An improved ordination technique
journal, October 1980
- Hill, M. O.; Gauch, H. G.
- Vegetatio, Vol. 42, Issue 1-3
Community structure and composition in response to climate change in a temperate steppe: STEPPE COMMUNITY RESPONSES TO CLIMATE CHANGE
journal, December 2010
- Yang, Haijun; Wu, Mingyu; Liu, Weixing
- Global Change Biology, Vol. 17, Issue 1
Grazing and the Dynamics of Nutrient and Energy Regulated Microbial Processes in the Serengeti grasslands
journal, May 1987
- Ruess, R. W.; McNaughton, S. J.
- Oikos, Vol. 49, Issue 1
Overwintering management on upland pasture causes shifts in an abundance of denitrifying microbial communities, their activity and N2O-reducing ability
journal, June 2009
- Chroňáková, Alica; Radl, Viviane; Čuhel, Jiří
- Soil Biology and Biochemistry, Vol. 41, Issue 6
An Experimental Study of the Effects of Sheep Grazing on Vegetation Change in a Species-Poor Grassland and the Role of Seedling Recruitment Into Gaps
journal, August 1994
- Bullock, J. M.; Hill, B. Clear; Dale, M. P.
- The Journal of Applied Ecology, Vol. 31, Issue 3
Ecological Linkages Between Aboveground and Belowground Biota
journal, June 2004
- Wardle, D. A.
- Science, Vol. 304, Issue 5677
Winter-grazing reduces methane uptake by soils of a typical semi-arid steppe in Inner Mongolia, China
journal, September 2007
- Liu, Chunyan; Holst, Jirko; Brüggemann, Nicolas
- Atmospheric Environment, Vol. 41, Issue 28
Molecular characterization of genes of Pseudomonas sp. strain HR199 involved in bioconversion of vanillin to protocatechuate.
journal, April 1997
- Priefert, H.; Rabenhorst, J.; Steinbüchel, A.
- Journal of Bacteriology, Vol. 179, Issue 8
How long before a change in soil organic carbon can be detected?
journal, November 2004
- Smith, Pete
- Global Change Biology, Vol. 10, Issue 11
Grazing-induced reduction of natural nitrous oxide release from continental steppe
journal, April 2010
- Wolf, Benjamin; Zheng, Xunhua; Brüggemann, Nicolas
- Nature, Vol. 464, Issue 7290
Bacteria dominate ammonia oxidation in soils used for outdoor cattle overwintering
journal, May 2014
- Radl, Viviane; Chroňáková, Alica; Čuhel, Jiři
- Applied Soil Ecology, Vol. 77
Lignin oxidation by laccase isozymes from Trametes versicolor and role of the mediator 2,2'-azinobis(3-ethylbenzthiazoline-6-sulfonate) in kraft lignin depolymerization.
journal, January 1995
- Bourbonnais, R.; Paice, M. G.; Reid, I. D.
- Applied and environmental microbiology, Vol. 61, Issue 5
Works referencing / citing this record:
Divergent responses of ecosystem respiration components to livestock exclusion on the Qinghai Tibetan Plateau
journal, May 2018
- Chen, Ji; Luo, Yiqi; Xia, Jianyang
- Land Degradation & Development, Vol. 29, Issue 6
Figures / Tables found in this record: