DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Brachypodium as an experimental system for the study of stem parenchyma biology in grasses

Abstract

Stem parenchyma is a major cell type that serves key metabolic functions for the plant especially in large grasses, such as sugarcane and sweet sorghum, where it serves to store sucrose or other products of photosynthesis. It is therefore desirable to understand the metabolism of this cell type as well as the mechanisms by which it provides its function for the rest of the plant. Ultimately, this information can be used to selectively manipulate this cell type in a controlled manner to achieve crop improvement. In this study, we show that Brachypodium distachyon is a useful model system for stem pith parenchyma biology. Brachypodium can be grown under condition where it resembles the growth patterns of important crops in that it produces large amounts of stem material with the lower leaves senescing and with significant stores of photosynthate located in the stem parenchyma cell types. We further characterize stem plastid morphology as a function of tissue types, as this organelle is central for a number of metabolic pathways, and quantify gene expression for the four main classes of starch biosynthetic genes. Notably, we find several of these genes differentially regulated between stem and leaf. Furthermore, these studies show, consistent withmore » other grasses, that the stem functions as a specialized storage compartment in Brachypodium.« less

Authors:
ORCiD logo [1];  [1];  [2]
  1. Michigan State Univ., East Lansing, MI (United States)
  2. Murdoch Univ. (Australia)
Publication Date:
Research Org.:
Univ. of Wisconsin System, Madison, WI (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1361521
Grant/Contract Number:  
FC02-07ER64494
Resource Type:
Accepted Manuscript
Journal Name:
PLoS ONE
Additional Journal Information:
Journal Volume: 12; Journal Issue: 3; Journal ID: ISSN 1932-6203
Publisher:
Public Library of Science
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; leaves; starches; internodes; parenchyma cells; grasses; sucrose; gene expression; plastids

Citation Formats

Jensen, Jacob Kruger, Wilkerson, Curtis Gene, and Ma, Wujun. Brachypodium as an experimental system for the study of stem parenchyma biology in grasses. United States: N. p., 2017. Web. doi:10.1371/journal.pone.0173095.
Jensen, Jacob Kruger, Wilkerson, Curtis Gene, & Ma, Wujun. Brachypodium as an experimental system for the study of stem parenchyma biology in grasses. United States. https://doi.org/10.1371/journal.pone.0173095
Jensen, Jacob Kruger, Wilkerson, Curtis Gene, and Ma, Wujun. Wed . "Brachypodium as an experimental system for the study of stem parenchyma biology in grasses". United States. https://doi.org/10.1371/journal.pone.0173095. https://www.osti.gov/servlets/purl/1361521.
@article{osti_1361521,
title = {Brachypodium as an experimental system for the study of stem parenchyma biology in grasses},
author = {Jensen, Jacob Kruger and Wilkerson, Curtis Gene and Ma, Wujun},
abstractNote = {Stem parenchyma is a major cell type that serves key metabolic functions for the plant especially in large grasses, such as sugarcane and sweet sorghum, where it serves to store sucrose or other products of photosynthesis. It is therefore desirable to understand the metabolism of this cell type as well as the mechanisms by which it provides its function for the rest of the plant. Ultimately, this information can be used to selectively manipulate this cell type in a controlled manner to achieve crop improvement. In this study, we show that Brachypodium distachyon is a useful model system for stem pith parenchyma biology. Brachypodium can be grown under condition where it resembles the growth patterns of important crops in that it produces large amounts of stem material with the lower leaves senescing and with significant stores of photosynthate located in the stem parenchyma cell types. We further characterize stem plastid morphology as a function of tissue types, as this organelle is central for a number of metabolic pathways, and quantify gene expression for the four main classes of starch biosynthetic genes. Notably, we find several of these genes differentially regulated between stem and leaf. Furthermore, these studies show, consistent with other grasses, that the stem functions as a specialized storage compartment in Brachypodium.},
doi = {10.1371/journal.pone.0173095},
journal = {PLoS ONE},
number = 3,
volume = 12,
place = {United States},
year = {Wed Mar 01 00:00:00 EST 2017},
month = {Wed Mar 01 00:00:00 EST 2017}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 4 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Supply and demand: sink regulation of sugar accumulation in sugarcane
journal, January 2009

  • McCormick, A. J.; Watt, D. A.; Cramer, M. D.
  • Journal of Experimental Botany, Vol. 60, Issue 2
  • DOI: 10.1093/jxb/ern310

Coordination of carbon supply and plant growth
journal, September 2007


Non-Invasive Monitoring of Sucrose Mobilization from Culm Storage Parenchyma by Magnetic Resonance Spectroscopy
journal, March 2013

  • O'Neill, Brian P.; Purnell, Matthew P.; Kurniawan, Nyoman D.
  • Bioscience, Biotechnology, and Biochemistry, Vol. 77, Issue 3
  • DOI: 10.1271/bbb.120682

Induction of (1→3,1→4)-*- D -glucan hydrolases in leaves of dark-incubated barley seedlings
journal, May 2002


Starch storage in the stems of wheat plants: localization and temporal changes
journal, February 2009

  • Scofield, Graham N.; Ruuska, Sari A.; Aoki, Naohiro
  • Annals of Botany, Vol. 103, Issue 6
  • DOI: 10.1093/aob/mcp010

Designing sorghum as a dedicated bioenergy feedstock
journal, October 2007

  • Rooney, William L.; Blumenthal, Jürg; Bean, Brent
  • Biofuels, Bioproducts and Biorefining, Vol. 1, Issue 2
  • DOI: 10.1002/bbb.15

Improving barley culm robustness for secured crop yield in a changing climate
journal, January 2015

  • Dockter, Christoph; Hansson, Mats
  • Journal of Experimental Botany, Vol. 66, Issue 12
  • DOI: 10.1093/jxb/eru521

Doubled sugar content in sugarcane plants modified to produce a sucrose isomer
journal, January 2007


Agrobacterium-mediated transformation of the temperate grass Brachypodium distachyon (genotype Bd21) for T-DNA insertional mutagenesis
journal, April 2008


High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3
journal, November 2007


Collapsed Xylem Phenotype of Arabidopsis Identifies Mutants Deficient in Cellulose Deposition in the Secondary Cell Wall
journal, May 1997

  • Turner, S. R.; Somerville, C. R.
  • The Plant Cell, Vol. 9, Issue 5, p. 689-701
  • DOI: 10.1105/tpc.9.5.689

A simple and efficient method for isolating RNA from pine trees
journal, June 1993

  • Chang, Shujun; Puryear, Jeff; Cairney, John
  • Plant Molecular Biology Reporter, Vol. 11, Issue 2
  • DOI: 10.1007/BF02670468

Interaction of Photoperiod and Vernalization Determines Flowering Time of Brachypodium distachyon
journal, December 2013

  • Ream, Thomas S.; Woods, Daniel P.; Schwartz, Christopher J.
  • Plant Physiology, Vol. 164, Issue 2
  • DOI: 10.1104/pp.113.232678

Natural Variation of Flowering Time and Vernalization Responsiveness in Brachypodium distachyon
journal, February 2010

  • Schwartz, Christopher J.; Doyle, Mark R.; Manzaneda, Antonio J.
  • BioEnergy Research, Vol. 3, Issue 1
  • DOI: 10.1007/s12155-009-9069-3

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon
journal, January 2009


Population Structure in the Model Grass Is Highly Correlated with Flowering Differences across Broad Geographic Areas
journal, January 2016


Genome sequencing and analysis of the model grass Brachypodium distachyon
journal, February 2010


Starch Metabolism in Arabidopsis
journal, January 2012

  • Streb, Sebastian; Zeeman, Samuel C.
  • The Arabidopsis Book, Vol. 10
  • DOI: 10.1199/tab.0160

The deposition and characterization of starch in Brachypodium distachyon
journal, July 2014

  • Tanackovic, Vanja; Svensson, Jan T.; Jensen, Susanne L.
  • Journal of Experimental Botany, Vol. 65, Issue 18
  • DOI: 10.1093/jxb/eru276

Starch biosynthesis, its regulation and biotechnological approaches to improve crop yields
journal, January 2014


Regulation of the Amount of Starch in Plant Tissues by ADP Glucose Pyrophosphorylase
journal, October 1992


Induction of (1→3,1→4)-*- D -glucan hydrolases in leaves of dark-incubated barley seedlings
journal, May 2002


Starch biosynthesis, its regulation and biotechnological approaches to improve crop yields
journal, January 2014


Genome sequencing and analysis of the model grass Brachypodium distachyon
journal, February 2010


Starch storage in the stems of wheat plants: localization and temporal changes
journal, February 2009

  • Scofield, Graham N.; Ruuska, Sari A.; Aoki, Naohiro
  • Annals of Botany, Vol. 103, Issue 6
  • DOI: 10.1093/aob/mcp010

Improving barley culm robustness for secured crop yield in a changing climate
journal, January 2015

  • Dockter, Christoph; Hansson, Mats
  • Journal of Experimental Botany, Vol. 66, Issue 12
  • DOI: 10.1093/jxb/eru521

Interaction of Photoperiod and Vernalization Determines Flowering Time of Brachypodium distachyon
journal, December 2013

  • Ream, Thomas S.; Woods, Daniel P.; Schwartz, Christopher J.
  • Plant Physiology, Vol. 164, Issue 2
  • DOI: 10.1104/pp.113.232678

Collapsed Xylem Phenotype of Arabidopsis Identifies Mutants Deficient in Cellulose Deposition in the Secondary Cell Wall
journal, May 1997

  • Turner, S. R.; Somerville, C. R.
  • The Plant Cell, Vol. 9, Issue 5, p. 689-701
  • DOI: 10.1105/tpc.9.5.689

Doubled sugar content in sugarcane plants modified to produce a sucrose isomer
journal, January 2007


Agrobacterium-mediated transformation of the temperate grass Brachypodium distachyon (genotype Bd21) for T-DNA insertional mutagenesis
journal, April 2008


Regulation of the Amount of Starch in Plant Tissues by ADP Glucose Pyrophosphorylase
journal, October 1992


Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon
journal, January 2009


Starch Metabolism in Arabidopsis
journal, January 2012

  • Streb, Sebastian; Zeeman, Samuel C.
  • The Arabidopsis Book, Vol. 10
  • DOI: 10.1199/tab.0160

Non-Invasive Monitoring of Sucrose Mobilization from Culm Storage Parenchyma by Magnetic Resonance Spectroscopy
journal, March 2013

  • O'Neill, Brian P.; Purnell, Matthew P.; Kurniawan, Nyoman D.
  • Bioscience, Biotechnology, and Biochemistry, Vol. 77, Issue 3
  • DOI: 10.1271/bbb.120682

Works referencing / citing this record:

Developmental dynamics of stem starch accumulation in Sorghum bicolor
journal, August 2018

  • McKinley, Brian A.; Casto, Anna L.; Rooney, William L.
  • Plant Direct, Vol. 2, Issue 8
  • DOI: 10.1002/pld3.74

Developmental dynamics of stem starch accumulation in Sorghum bicolor
journal, August 2018

  • McKinley, Brian A.; Casto, Anna L.; Rooney, William L.
  • Plant Direct, Vol. 2, Issue 8
  • DOI: 10.1002/pld3.74

The Effect of Ambient Temperature on Brachypodium distachyon Development
journal, August 2019