An Arabidopsis gene regulatory network for secondary cell wall synthesis
Abstract
The plant cell wall is an important factor for determining cell shape, function and response to the environment. Secondary cell walls, such as those found in xylem, are composed of cellulose, hemicelluloses and lignin and account for the bulk of plant biomass. The coordination between transcriptional regulation of synthesis for each polymer is complex and vital to cell function. A regulatory hierarchy of developmental switches has been proposed, although the full complement of regulators remains unknown. In this paper, we present a protein–DNA network between Arabidopsis thaliana transcription factors and secondary cell wall metabolic genes with gene expression regulated by a series of feed-forward loops. This model allowed us to develop and validate new hypotheses about secondary wall gene regulation under abiotic stress. Distinct stresses are able to perturb targeted genes to potentially promote functional adaptation. Finally, these interactions will serve as a foundation for understanding the regulation of a complex, integral plant component.
- Authors:
-
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- Univ. of California, Davis, CA (United States). Dept. of Plant Biology and Genome Center
- Univ. of Massachusetts, Amherst, MA (United States). Biology Dept.
- Univ. of California, Berkeley, CA (United States). Dept. of Plant and Microbial Biology
- Univ. of California, Davis, CA (United States). Dept. of Plant Biology
- Univ. of California, Davis, CA (United States). Dept. of Plant Sciences
- Univ. of California, Davis, CA (United States). Genome Center and Dept. of Computer Science
- Cold Spring Harbor Lab., NY (United States)
- Cold Spring Harbor Lab., NY (United States); US Dept. of Agriculture (USDA)., Ithaca, NY (United States)
- Univ. of California, San Diego, CA (United States). Section of Cell and Developmental Biology
- Univ. of Cambridge (United Kingdom). Theory of Condensed Matter Group
- Publication Date:
- Research Org.:
- Univ. of Massachusetts, Amherst, MA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1347111
- Grant/Contract Number:
- FG02-08ER64700
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Nature (London)
- Additional Journal Information:
- Journal Name: Nature (London); Journal Volume: 517; Journal Issue: 7536; Journal ID: ISSN 0028-0836
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; regulatory networks; plant development
Citation Formats
Taylor-Teeples, M., Lin, L., de Lucas, M., Turco, G., Toal, T. W., Gaudinier, A., Young, N. F., Trabucco, G. M., Veling, M. T., Lamothe, R., Handakumbura, P. P., Xiong, G., Wang, C., Corwin, J., Tsoukalas, A., Zhang, L., Ware, D., Pauly, M., Kliebenstein, D. J., Dehesh, K., Tagkopoulos, I., Breton, G., Pruneda-Paz, J. L., Ahnert, S. E., Kay, S. A., Hazen, S. P., and Brady, S. M. An Arabidopsis gene regulatory network for secondary cell wall synthesis. United States: N. p., 2014.
Web. doi:10.1038/nature14099.
Taylor-Teeples, M., Lin, L., de Lucas, M., Turco, G., Toal, T. W., Gaudinier, A., Young, N. F., Trabucco, G. M., Veling, M. T., Lamothe, R., Handakumbura, P. P., Xiong, G., Wang, C., Corwin, J., Tsoukalas, A., Zhang, L., Ware, D., Pauly, M., Kliebenstein, D. J., Dehesh, K., Tagkopoulos, I., Breton, G., Pruneda-Paz, J. L., Ahnert, S. E., Kay, S. A., Hazen, S. P., & Brady, S. M. An Arabidopsis gene regulatory network for secondary cell wall synthesis. United States. https://doi.org/10.1038/nature14099
Taylor-Teeples, M., Lin, L., de Lucas, M., Turco, G., Toal, T. W., Gaudinier, A., Young, N. F., Trabucco, G. M., Veling, M. T., Lamothe, R., Handakumbura, P. P., Xiong, G., Wang, C., Corwin, J., Tsoukalas, A., Zhang, L., Ware, D., Pauly, M., Kliebenstein, D. J., Dehesh, K., Tagkopoulos, I., Breton, G., Pruneda-Paz, J. L., Ahnert, S. E., Kay, S. A., Hazen, S. P., and Brady, S. M. Wed .
"An Arabidopsis gene regulatory network for secondary cell wall synthesis". United States. https://doi.org/10.1038/nature14099. https://www.osti.gov/servlets/purl/1347111.
@article{osti_1347111,
title = {An Arabidopsis gene regulatory network for secondary cell wall synthesis},
author = {Taylor-Teeples, M. and Lin, L. and de Lucas, M. and Turco, G. and Toal, T. W. and Gaudinier, A. and Young, N. F. and Trabucco, G. M. and Veling, M. T. and Lamothe, R. and Handakumbura, P. P. and Xiong, G. and Wang, C. and Corwin, J. and Tsoukalas, A. and Zhang, L. and Ware, D. and Pauly, M. and Kliebenstein, D. J. and Dehesh, K. and Tagkopoulos, I. and Breton, G. and Pruneda-Paz, J. L. and Ahnert, S. E. and Kay, S. A. and Hazen, S. P. and Brady, S. M.},
abstractNote = {The plant cell wall is an important factor for determining cell shape, function and response to the environment. Secondary cell walls, such as those found in xylem, are composed of cellulose, hemicelluloses and lignin and account for the bulk of plant biomass. The coordination between transcriptional regulation of synthesis for each polymer is complex and vital to cell function. A regulatory hierarchy of developmental switches has been proposed, although the full complement of regulators remains unknown. In this paper, we present a protein–DNA network between Arabidopsis thaliana transcription factors and secondary cell wall metabolic genes with gene expression regulated by a series of feed-forward loops. This model allowed us to develop and validate new hypotheses about secondary wall gene regulation under abiotic stress. Distinct stresses are able to perturb targeted genes to potentially promote functional adaptation. Finally, these interactions will serve as a foundation for understanding the regulation of a complex, integral plant component.},
doi = {10.1038/nature14099},
journal = {Nature (London)},
number = 7536,
volume = 517,
place = {United States},
year = {Wed Dec 24 00:00:00 EST 2014},
month = {Wed Dec 24 00:00:00 EST 2014}
}
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Works referenced in this record:
Identification of Novel Genes in Arabidopsis Involved in Secondary Cell Wall Formation Using Expression Profiling and Reverse Genetics
journal, June 2005
- Brown, David M.; Zeef, Leo A. H.; Ellis, Joanne
- The Plant Cell, Vol. 17, Issue 8
Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets
journal, June 2005
- Persson, S.; Wei, H.; Milne, J.
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 24
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
journal, April 2010
- Carlsbecker, Annelie; Lee, Ji-Young; Roberts, Christina J.
- Nature, Vol. 465, Issue 7296
The NAC Transcription Factors NST1 and NST2 of Arabidopsis Regulate Secondary Wall Thickenings and Are Required for Anther Dehiscence
journal, October 2005
- Mitsuda, Nobutaka; Seki, Motoaki; Shinozaki, Kazuo
- The Plant Cell, Vol. 17, Issue 11
A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
journal, November 2007
- Brady, S. M.; Orlando, D. A.; Lee, J. -Y.
- Science, Vol. 318, Issue 5851
A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis
journal, October 2008
- Zhong, R.; Lee, C.; Zhou, J.
- The Plant Cell, Vol. 20, Issue 10, p. 2763-2782
Enhanced Y1H assays for Arabidopsis
journal, October 2011
- Gaudinier, Allison; Zhang, Lifang; Reece-Hoyes, John S.
- Nature Methods, Vol. 8, Issue 12
Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis
journal, January 2012
- Kim, Won-Chan; Ko, Jae-Heung; Han, Kyung-Hwan
- Plant Molecular Biology, Vol. 78, Issue 4-5
VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation: Direct target genes of VND7
journal, March 2011
- Yamaguchi, Masatoshi; Mitsuda, Nobutaka; Ohtani, Misato
- The Plant Journal, Vol. 66, Issue 4
MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis
journal, January 2009
- Zhou, Jianli; Lee, Chanhui; Zhong, Ruiqin
- The Plant Cell, Vol. 21, Issue 1
Navigating the transcriptional roadmap regulating plant secondary cell wall deposition
journal, January 2013
- Hussey, Steven G.; Mizrachi, Eshchar; Creux, Nicky M.
- Frontiers in Plant Science, Vol. 4
What does biologically meaningful mean? A perspective on gene regulatory network validation
journal, January 2011
- Walhout, Albertha JM
- Genome Biology, Vol. 12, Issue 4
Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis
journal, May 2014
- Kim, Won-Chan; Kim, Joo-Yeol; Ko, Jae-Heung
- Plant Molecular Biology, Vol. 85, Issue 6
Power graph compression reveals dominant relationships in genetic transcription networks
journal, January 2013
- Ahnert, Sebastian E.
- Molecular BioSystems, Vol. 9, Issue 11
MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis
journal, November 2012
- Kim, Won-Chan; Ko, Jae-Heung; Kim, Joo-Yeol
- The Plant Journal, Vol. 73, Issue 1
The Balance between Cell Division and Endoreplication Depends on E2FC-DPB, Transcription Factors Regulated by the Ubiquitin-SCF SKP2A Pathway in Arabidopsis
journal, August 2006
- del Pozo, Juan C.; Diaz-Trivino, Sara; Cisneros, Nerea
- The Plant Cell, Vol. 18, Issue 9
Arabidopsis E2Fc Functions in Cell Division and Is Degraded by the Ubiquitin-SCF AtSKP2 Pathway in Response to Light
journal, November 2002
- del Pozo, Juan Carlos; Boniotti, Maria Beatrice; Gutierrez, Crisanto
- The Plant Cell, Vol. 14, Issue 12
The E2F Family of Transcription Factors from Arabidopsis thaliana : NOVEL AND CONSERVED COMPONENTS OF THE RETINOBLASTOMA/E2F PATHWAY IN PLANTS
journal, January 2002
- Mariconti, Luisa; Pellegrini, Barbara; Cantoni, Rita
- Journal of Biological Chemistry, Vol. 277, Issue 12
Interaction of the Arabidopsis E2F and DP Proteins Confers Their Concomitant Nuclear Translocation and Transactivation
journal, February 2002
- Kosugi, Shunichi; Ohashi, Yuko
- Plant Physiology, Vol. 128, Issue 3
Dissecting regulatory pathways of G1/S control in Arabidopsis: common and distinct targets of CYCD3;1, E2Fa and E2Fc
journal, August 2009
- de Jager, Sarah M.; Scofield, Simon; Huntley, Rachael P.
- Plant Molecular Biology, Vol. 71, Issue 4-5
The E2F transcription factor family regulates CENH3 expression in Arabidopsis thaliana: Regulation of AtCENH3 expression
journal, August 2011
- Heckmann, Stefan; Lermontova, Inna; Berckmans, Barbara
- The Plant Journal, Vol. 68, Issue 4
The E2FC-DPB Transcription Factor Controls Cell Division, Endoreplication and Lateral Root Formation in a SCFSKP2A- Dependent Manner
journal, July 2007
- del Pozo, Juan c.; Diaz-Trivino, Sara; Cisneros, Nerea
- Plant Signaling & Behavior, Vol. 2, Issue 4
VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation in Arabidopsis
journal, April 2010
- Yamaguchi, Masatoshi; Ohtani, Misato; Mitsuda, Nobutaka
- The Plant Cell, Vol. 22, Issue 4
VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 Effectively Induce Transdifferentiation into Xylem Vessel Elements under Control of an Induction System
journal, May 2010
- Yamaguchi, Masatoshi; Goué, Nadia; Igarashi, Hisako
- Plant Physiology, Vol. 153, Issue 3
A Feedback Regulatory Module Formed by LITTLE ZIPPER and HD-ZIPIII Genes
journal, November 2007
- Wenkel, Stephan; Emery, John; Hou, Bi-Huei
- The Plant Cell, Vol. 19, Issue 11
MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes
journal, December 2011
- Zhong, Ruiqin; Ye, Zheng-Hua
- Plant and Cell Physiology, Vol. 53, Issue 2
Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation
journal, October 2010
- Ohashi-Ito, Kyoko; Oda, Yoshihisa; Fukuda, Hiroo
- The Plant Cell, Vol. 22, Issue 10
TERE; a novel cis-element responsible for a coordinated expression of genes related to programmed cell death and secondary wall formation during differentiation of tracheary elements: Tracheary-element-regulating cis-element
journal, August 2007
- Pyo, Hyunjin; Demura, Taku; Fukuda, Hiroo
- The Plant Journal, Vol. 51, Issue 6
Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress
journal, May 2008
- Dinneny, J. R.; Long, T. A.; Wang, J. Y.
- Science, Vol. 320, Issue 5878
Cell Identity Regulators Link Development and Stress Responses in the Arabidopsis Root
journal, October 2011
- Iyer-Pascuzzi, Anjali S.; Jackson, Terry; Cui, Hongchang
- Developmental Cell, Vol. 21, Issue 4
Cell-specific nitrogen responses mediate developmental plasticity
journal, January 2008
- Gifford, M. L.; Dean, A.; Gutierrez, R. A.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 2
A stele‐enriched gene regulatory network in the Arabidopsis root
journal, January 2011
- Brady, Siobhan M.; Zhang, Lifang; Megraw, Molly
- Molecular Systems Biology, Vol. 7, Issue 1
Genome-Wide ORFeome Cloning and Analysis of Arabidopsis Transcription Factor Genes
journal, June 2004
- Gong, Wei; Shen, Yun-Ping; Ma, Li-Geng
- Plant Physiology, Vol. 135, Issue 2
REGIA, An EU Project on Functional Genomics of Transcription Factors from Arabidopsis thaliana
journal, January 2002
- Paz-Ares, Javier
- Comparative and Functional Genomics, Vol. 3, Issue 2
Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations
journal, May 2006
- Underwood, Beverly A.; Vanderhaeghen, Rudy; Whitford, Ryan
- Plant Biotechnology Journal, Vol. 4, Issue 3
Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome
journal, October 2003
- Yamada, K.
- Science, Vol. 302, Issue 5646
A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock
journal, March 2009
- Pruneda-Paz, J. L.; Breton, G.; Para, A.
- Science, Vol. 323, Issue 5920
Transcription switches for protoxylem and metaxylem vessel formation
journal, August 2005
- Kubo, M.
- Genes & Development, Vol. 19, Issue 16
Roles for Class III HD-Zip and KANADI Genes in Arabidopsis Root Development
journal, July 2004
- Hawker, Nathaniel P.; Bowman, John L.
- Plant Physiology, Vol. 135, Issue 4
Semimicro determination of cellulose inbiological materials
journal, December 1969
- Updegraff, David M.
- Analytical Biochemistry, Vol. 32, Issue 3
Determination of Dextran with Anthrone
journal, November 1953
- Scott, T. A.; Melvin, E. H.
- Analytical Chemistry, Vol. 25, Issue 11
Molecular Chaperone Hsp90 Associates with Resistance Protein N and Its Signaling Proteins SGT1 and Rar1 to Modulate an Innate Immune Response in Plants
journal, October 2003
- Liu, Yule; Burch-Smith, Tessa; Schiff, Michael
- Journal of Biological Chemistry, Vol. 279, Issue 3
Retracted: An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus
journal, February 2003
- Voinnet, Olivier; Rivas, Susana; Mestre, Pere
- The Plant Journal, Vol. 33, Issue 5
Mechanical Stress Induces Biotic and Abiotic Stress Responses via a Novel cis-Element
journal, January 2007
- Walley, Justin W.; Coughlan, Sean; Hudson, Matthew E.
- PLoS Genetics, Vol. 3, Issue 10
The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth
journal, July 2011
- Nusinow, Dmitri A.; Helfer, Anne; Hamilton, Elizabeth E.
- Nature, Vol. 475, Issue 7356
puma: a Bioconductor package for propagating uncertainty in microarray analysis
journal, July 2009
- Pearson, Richard D.; Liu, Xuejun; Sanguinetti, Guido
- BMC Bioinformatics, Vol. 10, Issue 1
SIRENE: supervised inference of regulatory networks
journal, August 2008
- Mordelet, F.; Vert, J. -P.
- Bioinformatics, Vol. 24, Issue 16
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
journal, September 2010
- Huynh-Thu, Vân Anh; Irrthum, Alexandre; Wehenkel, Louis
- PLoS ONE, Vol. 5, Issue 9
DREAM4: Combining Genetic and Dynamic Information to Identify Biological Networks and Dynamical Models
journal, October 2010
- Greenfield, Alex; Madar, Aviv; Ostrer, Harry
- PLoS ONE, Vol. 5, Issue 10
TIGRESS: Trustful Inference of Gene REgulation using Stability Selection
journal, January 2012
- Haury, Anne-Claire; Mordelet, Fantine; Vera-Licona, Paola
- BMC Systems Biology, Vol. 6, Issue 1
Inferring gene regulatory networks by ANOVA
journal, March 2012
- Küffner, Robert; Petri, Tobias; Tavakkolkhah, Pegah
- Bioinformatics, Vol. 28, Issue 10
Wisdom of crowds for robust gene network inference
journal, July 2012
- Marbach, Daniel; Costello, James C.; Küffner, Robert
- Nature Methods, Vol. 9, Issue 8
Mechanical stress induces biotic and abiotic stress responses via a novel cis-element
journal, January 2005
- walley, Justin; Coughlan, Sean; Hudson, Matthew E.
- PLoS Genetics, Vol. preprint, Issue 2007
Works referencing / citing this record:
Fungi-Enabled Synthesis of Ultrahigh-Surface-Area Porous Carbon
journal, December 2018
- Wang, Ping; Ye, Huan; Yin, Ya-Xia
- Advanced Materials, Vol. 31, Issue 4
EliteTree™: an advanced biomass tree crop technology that features greater wood density and accelerated stem growth
journal, February 2017
- Ko, Jae‐Heung; Kim, Won‐Chan; Cho, Jin‐Seong
- Biofuels, Bioproducts and Biorefining, Vol. 11, Issue 3
Lignocellulosic bioma ss : Biosynthesis, degradation, and industrial utilization
journal, October 2015
- Guerriero, Gea; Hausman, Jean-Francois; Strauss, Joseph
- Engineering in Life Sciences, Vol. 16, Issue 1
A sorghum NAC gene is associated with variation in biomass properties and yield potential
journal, July 2018
- Xia, Jingnu; Zhao, Yunjun; Burks, Payne
- Plant Direct, Vol. 2, Issue 7
A major QTL on chromosome C05 significantly reduces acid detergent lignin (ADL) content and increases seed oil and protein content in oilseed rape (Brassica napus L.)
journal, August 2018
- Behnke, Nina; Suprianto, Edy; Möllers, Christian
- Theoretical and Applied Genetics, Vol. 131, Issue 11
Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa
journal, January 2017
- Shi, Rui; Wang, Jack P.; Lin, Ying-Chung
- Planta, Vol. 245, Issue 5
Transcriptional regulatory framework for vascular cambium development in Arabidopsis roots
journal, October 2019
- Zhang, Jing; Eswaran, Gugan; Alonso-Serra, Juan
- Nature Plants, Vol. 5, Issue 10
Reverse engineering highlights potential principles of large gene regulatory network design and learning
journal, June 2017
- Carré, Clément; Mas, André; Krouk, Gabriel
- npj Systems Biology and Applications, Vol. 3, Issue 1
Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content
journal, August 2018
- Kasirajan, Lakshmi; Hoang, Nam V.; Furtado, Agnelo
- Scientific Reports, Vol. 8, Issue 1
Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites
journal, September 2015
- Liu, Xia; Zhao, Bo; Zheng, Hua-Jun
- Scientific Reports, Vol. 5, Issue 1
Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum
journal, December 2016
- You, Qi; Zhang, Liwei; Yi, Xin
- Scientific Reports, Vol. 6, Issue 1
The flowering hormone florigen accelerates secondary cell wall biogenesis to harmonize vascular maturation with reproductive development
journal, July 2019
- Shalit-Kaneh, Akiva; Eviatar-Ribak, Tamar; Horev, Guy
- Proceedings of the National Academy of Sciences, Vol. 116, Issue 32
Biosynthesis and Regulation of Phenylpropanoids in Plants
journal, July 2017
- Deng, Yuxing; Lu, Shanfa
- Critical Reviews in Plant Sciences, Vol. 36, Issue 4
Identification of transcription factors that regulate ATG8 expression and autophagy in Arabidopsis
journal, March 2019
- Wang, Ping; Nolan, Trevor M.; Yin, Yanhai
- Autophagy
The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation
journal, October 2015
- Du, Qian; Wang, Huanzhong
- Plant Signaling & Behavior, Vol. 10, Issue 10
Novel tool to quantify cell wall porosity relates wall structure to cell growth and drug uptake
journal, February 2019
- Liu, Xiaohui; Li, Jiazhou; Zhao, Heyu
- Journal of Cell Biology, Vol. 218, Issue 4
The cell biology of secondary cell wall biosynthesis
journal, February 2018
- Meents, Miranda J.; Watanabe, Yoichiro; Samuels, A. Lacey
- Annals of Botany, Vol. 121, Issue 6
From hairballs to hypotheses–biological insights from microbial networks
journal, July 2018
- Röttjers, Lisa; Faust, Karoline
- FEMS Microbiology Reviews, Vol. 42, Issue 6
Secondary cell walls: biosynthesis and manipulation
journal, December 2015
- Kumar, Manoj; Campbell, Liam; Turner, Simon
- Journal of Experimental Botany, Vol. 67, Issue 2
Class III HD-ZIPs govern vascular cell fate: an HD view on patterning and differentiation
journal, October 2016
- Ramachandran, Prashanth; Carlsbecker, Annelie; Etchells, J. Peter
- Journal of Experimental Botany, Vol. 68, Issue 1
PbrMYB169 positively regulates lignification of stone cells in pear fruit
journal, January 2019
- Xue, Cheng; Yao, Jia-Long; Xue, Yong-Song
- Journal of Experimental Botany, Vol. 70, Issue 6
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
journal, December 2017
- Kulkarni, Shubhada R.; Vaneechoutte, Dries; Van de Velde, Jan
- Nucleic Acids Research, Vol. 46, Issue 6
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant
journal, June 2018
- Defoort, Jonas; Van de Peer, Yves; Vermeirssen, Vanessa
- Nucleic Acids Research, Vol. 46, Issue 13
PlantRegMap: charting functional regulatory maps in plants
journal, November 2019
- Tian, Feng; Yang, De-Chang; Meng, Yu-Qi
- Nucleic Acids Research
A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration
journal, February 2018
- Ikeuchi, Momoko; Shibata, Michitaro; Rymen, Bart
- Plant and Cell Physiology, Vol. 59, Issue 4
Development of secondary cell walls in cells adjacent to vessel elements may be controlled by signals from the vessel element
journal, April 2019
- Poovaiah, Charleson; Coleman, Heather D.
- Tree Physiology, Vol. 39, Issue 4
Decoding functional regulatory maps via genomic evolutionary footprints in 63 green plants
preprint, December 2018
- Tian, Feng; Yang, De-Chang; Meng, Yu-Qi
Hierarchical and dynamic regulation of defense-responsive specialized metabolism by WRKY and MYB transcription factors
posted_content, July 2019
- Barco, Brenden; Clay, Nicole K.
- Frontiers in Plant Science
Conserved nuclear receptors controlling a novel trait target fast-evolving genes expressed in a single cell
preprint, October 2019
- Sieriebriennikov, Bogdan; Sun, Shuai; Lightfoot, James W.
50 years of Arabidopsis research: highlights and future directions
journal, October 2015
- Provart, Nicholas J.; Alonso, Jose; Assmann, Sarah M.
- New Phytologist, Vol. 209, Issue 3
Genetic variations and miRNA-target interactions contribute to natural phenotypic variations in Populus
journal, June 2016
- Chen, Jinhui; Xie, Jianbo; Chen, Beibei
- New Phytologist, Vol. 212, Issue 1
The Eucalyptus linker histone variant EgH1.3 cooperates with the transcription factor EgMYB1 to control lignin biosynthesis during wood formation
journal, August 2016
- Soler, Marçal; Plasencia, Anna; Larbat, Romain
- New Phytologist, Vol. 213, Issue 1
Dark-induced leaf senescence: new insights into a complex light-dependent regulatory pathway
journal, September 2016
- Liebsch, Daniela; Keech, Olivier
- New Phytologist, Vol. 212, Issue 3
Cargo‐dependent and cell wall‐associated xylem transport in Arabidopsis
journal, November 2018
- Endo, Satoshi; Iwai, Yumi; Fukuda, Hiroo
- New Phytologist, Vol. 222, Issue 1
A systems biology view of wood formation in Eucalyptus grandis trees submitted to different potassium and water regimes
journal, April 2019
- Ployet, Raphael; Veneziano Labate, Mônica T.; Regiani Cataldi, Thais
- New Phytologist, Vol. 223, Issue 2
An AP 2/ ERF transcription factor ERF 139 coordinates xylem cell expansion and secondary cell wall deposition
journal, July 2019
- Wessels, Bernard; Seyfferth, Carolin; Escamez, Sacha
- New Phytologist, Vol. 224, Issue 4
Combining enhanced biomass density with reduced lignin level for improved forage quality
journal, July 2015
- Gallego-Giraldo, Lina; Shadle, Gail; Shen, Hui
- Plant Biotechnology Journal, Vol. 14, Issue 3
Ethylene‐responsive factor 4 is associated with the desirable rind hardness trait conferring cracking resistance in fresh fruits of watermelon
journal, October 2019
- Liao, Nanqiao; Hu, Zhongyuan; Li, Yingying
- Plant Biotechnology Journal, Vol. 18, Issue 4
The genome of kenaf ( Hibiscus cannabinus L.) provides insights into bast fibre and leaf shape biogenesis
journal, January 2020
- Zhang, Liwu; Xu, Yi; Zhang, Xingtan
- Plant Biotechnology Journal, Vol. 18, Issue 8
Sucrose transport and carbon fluxes during wood formation
journal, July 2018
- Mahboubi, Amir; Niittylä, Totte
- Physiologia Plantarum, Vol. 164, Issue 1
Dynamics of biomass partitioning, stem gene expression, cell wall biosynthesis, and sucrose accumulation during development of Sorghum bicolor
journal, September 2016
- McKinley, Brian; Rooney, William; Wilkerson, Curtis
- The Plant Journal, Vol. 88, Issue 4
Poplar carbohydrate‐active enzymes: whole‐genome annotation and functional analyses based on RNA expression data
journal, July 2019
- Kumar, Vikash; Hainaut, Matthieu; Delhomme, Nicolas
- The Plant Journal, Vol. 99, Issue 4
A genetic framework for H2O2 induced cell death in Arabidopsis thaliana
journal, October 2015
- Kaurilind, Eve; Xu, Enjun; Brosché, Mikael
- BMC Genomics, Vol. 16, Issue 1
Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. gaud (ramie)
journal, January 2020
- Xie, Jiyong; Li, Jiaqi; Jie, Yucheng
- BMC Genomics, Vol. 21, Issue 1
Domestication-driven Gossypium profilin 1 (GhPRF1) gene transduces early flowering phenotype in tobacco by spatial alteration of apical/floral-meristem related gene expression
journal, May 2016
- Pandey, Dhananjay K.; Chaudhary, Bhupendra
- BMC Plant Biology, Vol. 16, Issue 1
Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis
journal, October 2019
- Ma, Qiang; Wang, Nuohan; Hao, Pengbo
- BMC Plant Biology, Vol. 19, Issue 1
Q&A: How do gene regulatory networks control environmental responses in plants?
journal, April 2018
- Sun, Ying; Dinneny, José R.
- BMC Biology, Vol. 16, Issue 1
Identification of regulatory modules in genome scale transcription regulatory networks
journal, December 2017
- Song, Qi; Grene, Ruth; Heath, Lenwood S.
- BMC Systems Biology, Vol. 11, Issue 1
An efficient transient expression system for gene function analysis in rose
journal, December 2017
- Lu, Jun; Bai, Mengjuan; Ren, Haoran
- Plant Methods, Vol. 13, Issue 1
Abiotic stress modulates root patterning via ABA-regulated microRNA expression in the endodermis initials
journal, August 2019
- Bloch, Daria; Puli, Malikarjuna Rao; Mosquna, Assaf
- Development, Vol. 146, Issue 17
The Arabidopsis RCC1 Family Protein TCF1 Regulates Freezing Tolerance and Cold Acclimation through Modulating Lignin Biosynthesis
journal, September 2015
- Ji, Hongtao; Wang, Youning; Cloix, Catherine
- PLOS Genetics, Vol. 11, Issue 9
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana
journal, January 2019
- Liu, Chang; Yu, Hasi; Li, Laigeng
- PLOS Genetics, Vol. 15, Issue 1
NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants
journal, May 2015
- Nakano, Yoshimi; Yamaguchi, Masatoshi; Endo, Hitoshi
- Frontiers in Plant Science, Vol. 6
Molecular Mechanisms for Vascular Development and Secondary Cell Wall Formation
journal, March 2016
- Yang, Jung Hyun; Wang, Huanzhong
- Frontiers in Plant Science, Vol. 7
Concurrent Drought Stress and Vascular Pathogen Infection Induce Common and Distinct Transcriptomic Responses in Chickpea
journal, March 2017
- Sinha, Ranjita; Gupta, Aarti; Senthil-Kumar, Muthappa
- Frontiers in Plant Science, Vol. 8
Current Models for Transcriptional Regulation of Secondary Cell Wall Biosynthesis in Grasses
journal, April 2018
- Rao, Xiaolan; Dixon, Richard A.
- Frontiers in Plant Science, Vol. 9
Getting to the Roots: A Developmental Genetic View of Root Anatomy and Function From Arabidopsis to Lycophytes
journal, September 2018
- Augstein, Frauke; Carlsbecker, Annelie
- Frontiers in Plant Science, Vol. 9
Recent Advances in the Transcriptional Regulation of Secondary Cell Wall Biosynthesis in the Woody Plants
journal, October 2018
- Zhang, Jin; Xie, Meng; Tuskan, Gerald A.
- Frontiers in Plant Science, Vol. 9
Glycosylphosphatidylinositol-Anchored Proteins in Arabidopsis and One of Their Common Roles in Signaling Transduction
journal, August 2019
- Zhou, Ke
- Frontiers in Plant Science, Vol. 10
Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in Populus
journal, September 2019
- Kim, Min-Ha; Cho, Jin-Seong; Jeon, Hyung-Woo
- Genes, Vol. 10, Issue 9
Feeding the Walls: How Does Nutrient Availability Regulate Cell Wall Composition?
journal, September 2018
- Ogden, Michael; Hoefgen, Rainer; Roessner, Ute
- International Journal of Molecular Sciences, Vol. 19, Issue 9
Plant Fibre: Molecular Structure and Biomechanical Properties, of a Complex Living Material, Influencing Its Deconstruction towards a Biobased Composite
journal, July 2016
- Sorieul, Mathias; Dickson, Alan; Hill, Stefan
- Materials, Vol. 9, Issue 8
May the Fittest Protein Evolve: Favoring the Plant-Specific Origin and Expansion of NAC Transcription Factors
journal, June 2018
- Mathew, Iny Elizebeth; Agarwal, Pinky
- BioEssays, Vol. 40, Issue 8
Ectopic expression of GhCOBL9A, a cotton glycosyl-phosphatidyl inositol-anchored protein encoding gene, promotes cell elongation, thickening and increased plant biomass in transgenic Arabidopsis
journal, June 2018
- Niu, Erli; Fang, Shuai; Shang, Xiaoguang
- Molecular Genetics and Genomics, Vol. 293, Issue 5
Dynamic metabolic reprogramming of steroidal glycol-alkaloid and phenylpropanoid biosynthesis may impart early blight resistance in wild tomato (Solanum arcanum Peralta)
journal, October 2017
- Shinde, Balkrishna A.; Dholakia, Bhushan B.; Hussain, Khalid
- Plant Molecular Biology, Vol. 95, Issue 4-5
RED DE COEXPRESIÓN DE 320 GENES DE Tectona grandis RELACIONADOS CON PROCESOS DE ESTRÉS ABIÓTICO Y XILOGÉNESIS
journal, July 2017
- Camel, Vladimir; Galeano, Esteban; Carrer, Helaine
- TIP, Vol. 20, Issue 2
Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells
journal, August 2017
- de Luis Balaguer, Maria Angels; Fisher, Adam P.; Clark, Natalie M.
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 36
Arabidopsis mRNA decay landscape arises from specialized RNA decay substrates, decapping-mediated feedback, and redundancy
journal, January 2018
- Sorenson, Reed S.; Deshotel, Malia J.; Johnson, Katrina
- Proceedings of the National Academy of Sciences, Vol. 115, Issue 7
Molecular mechanisms governing differential robustness of development and environmental responses in plants
journal, October 2015
- Lachowiec, Jennifer; Queitsch, Christine; Kliebenstein, Daniel J.
- Annals of Botany, Vol. 117, Issue 5
PlanExp: intuitive integration of complex RNA-seq datasets with planarian omics resources
journal, October 2019
- Castillo-Lara, S.; Pascual-Carreras, E.; Abril, J. F.
- Bioinformatics
Novel cell surface luciferase reporter for high-throughput yeast one-hybrid screens
journal, July 2017
- Bonaldi, Katia; Li, Zheng; Kang, S. Earl
- Nucleic Acids Research, Vol. 45, Issue 18
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
posted_content, November 2017
- Kulkarni, Shubhada R.; Vaneechoutte, Dries; Van de Velde, Jan
- Nucleic Acids Research
The Flowering Hormone Florigen Accelerates Secondary Cell Wall Biogenesis to Harmonize Vascular Maturation with Reproductive Development
posted_content, November 2018
- Shalit-Kaneh, Akiva; Eviatar-Ribak, Tamar; Horev, Guy
- Proceedings of the National Academy of Sciences
Initiation and regulation of vascular tissue identity in the Arabidopsis embryo
preprint, November 2019
- Smit, Margot E.; Llavata-Peris, Cristina I.; Roosjen, Mark
Genes and networks regulating root anatomy and architecture
journal, May 2015
- Wachsman, Guy; Sparks, Erin E.; Benfey, Philip N.
- New Phytologist, Vol. 208, Issue 1
NorWood: a gene expression resource for evo-devo studies of conifer wood development
journal, February 2017
- Jokipii-Lukkari, Soile; Sundell, David; Nilsson, Ove
- New Phytologist, Vol. 216, Issue 2
Genetic engineering of grass cell wall polysaccharides for biorefining
journal, June 2017
- Bhatia, Rakesh; Gallagher, Joe A.; Gomez, Leonardo D.
- Plant Biotechnology Journal, Vol. 15, Issue 9
Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum )
journal, September 2018
- Rao, Xiaolan; Chen, Xin; Shen, Hui
- Plant Biotechnology Journal, Vol. 17, Issue 3
A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses: AtSAP13 and tolerance to multiple abiotic stresses
journal, January 2018
- Dixit, Anirudha; Tomar, Parul; Vaine, Evan
- Plant, Cell & Environment, Vol. 41, Issue 5
The Class II KNOX genes KNAT3 and KNAT7 work cooperatively to influence deposition of secondary cell walls that provide mechanical support to Arabidopsis stems
journal, November 2019
- Wang, Shumin; Yamaguchi, Masatoshi; Grienenberger, Etienne
- The Plant Journal, Vol. 101, Issue 2
Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls
journal, July 2017
- MacMillan, Colleen P.; Birke, Hannah; Chuah, Aaron
- BMC Genomics, Vol. 18, Issue 1
Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants
journal, July 2016
- Vargas, Lívia; Cesarino, Igor; Vanholme, Ruben
- Biotechnology for Biofuels, Vol. 9, Issue 1
Dynamics of gene expression during development and expansion of vegetative stem internodes of bioenergy sorghum
journal, June 2017
- Kebrom, Tesfamichael H.; McKinley, Brian; Mullet, John E.
- Biotechnology for Biofuels, Vol. 10, Issue 1
An essential role for Abscisic acid in the regulation of xylem fibre differentiation
journal, January 2018
- Campbell, Liam; Etchells, J. Peter; Cooper, Matthew
- Development
Genome-wide association mapping in winter barley for grain yield and culm cell wall polymer content using the high-throughput CoMPP technique
journal, March 2017
- Bellucci, Andrea; Tondelli, Alessandro; Fangel, Jonatan U.
- PLOS ONE, Vol. 12, Issue 3
Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. Gaud (ramie)
posted_content, January 2020
- Xie, Jiyong; Li, Jiaqi; Jie, Yucheng
- BMC Genomics
Cell wall heterogeneity in root development of arabidopsis
text, January 2021
- Somssich, M.; Khan, Ga; Staffan, Sp
- La Trobe
Regulation of Lignin Biosynthesis and Its Role in Growth-Defense Tradeoffs
journal, September 2018
- Xie, Meng; Zhang, Jin; Tschaplinski, Timothy J.
- Frontiers in Plant Science, Vol. 9
Plant vascular development: from early specification to differentiation
journal, November 2015
- De Rybel, Bert; Mähönen, Ari Pekka; Helariutta, Yrjö
- Nature Reviews Molecular Cell Biology, Vol. 17, Issue 1
Transcriptome analysis reveals the role of the root hairs as environmental sensors to maintain plant functions under water-deficiency conditions
journal, November 2015
- Kwasniewski, Miroslaw; Daszkowska-Golec, Agata; Janiak, Agnieszka
- Journal of Experimental Botany, Vol. 67, Issue 4
SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae
journal, September 2018
- Handakumbura, Pubudu P.; Brow, Kathryn; Whitney, Ian P.
- The Plant Journal, Vol. 96, Issue 3
A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration.
text, January 2018
- Ikeuchi, Momoko; Shibata, Michitaro; Rymen, Bart
- Apollo - University of Cambridge Repository
Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. Gaud (ramie)
posted_content, January 2020
- Xie, Jiyong; Li, Jiaqi; Jie, Yucheng
The Plant Cell Wall: A Complex and Dynamic Structure As Revealed by the Responses of Genes under Stress Conditions
journal, August 2016
- Houston, Kelly; Tucker, Matthew R.; Chowdhury, Jamil
- Frontiers in Plant Science, Vol. 7
Genome-Wide Association Studies for Five Forage Quality-Related Traits in Sorghum (Sorghum bicolor L.)
journal, August 2018
- Li, Jieqin; Tang, Weijie; Zhang, Ya-Wen
- Frontiers in Plant Science, Vol. 9
Wood and water: How trees modify wood development to cope with drought
journal, March 2019
- Rodriguez‐Zaccaro, F. Daniela; Groover, Andrew
- PLANTS, PEOPLE, PLANET, Vol. 1, Issue 4
Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome
journal, April 2018
- Ratke, Christine; Terebieniec, Barbara K.; Winestrand, Sandra
- New Phytologist, Vol. 219, Issue 1
Comparative transcriptome profiling and morphology provide insights into endocarp cleaving of apricot cultivar (Prunus armeniaca L.)
journal, April 2017
- Zhang, Xiao; Zhang, Lijie; Zhang, Qiuping
- BMC Plant Biology, Vol. 17, Issue 1
Recent advances in gene function prediction using context-specific coexpression networks in plants
journal, January 2019
- Gupta, Chirag; Pereira, Andy
- F1000Research, Vol. 8
Over-expression of poplar NAC15 gene enhances wood formation in transgenic tobacco
preprint, January 2020
- Yao, Wenjing; Zhang, Dawei; Zhou, Boru
Cell Wall Heterogeneity in Root Development of Arabidopsis
journal, August 2016
- Somssich, Marc; Khan, Ghazanfar Abbas; Persson, Staffan
- Frontiers in Plant Science, Vol. 07
Secondary Wall Regulating NACs Differentially Bind at the Promoter at a CELLULOSE SYNTHASE A4 Cis-eQTL
journal, December 2018
- Olins, Jennifer R.; Lin, Li; Lee, Scott J.
- Frontiers in Plant Science, Vol. 9
Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. Gaud (ramie)
preprint, January 2020
- Xie, Jiyong; Li, Jiaqi; Jie, Yucheng
Over-expression of poplar NAC15 gene enhances wood formation in transgenic tobacco
preprint, January 2020
- Yao, Wenjing; Zhang, Dawei; Zhou, Boru
Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors
journal, January 2020
- Barco, Brenden; Clay, Nicole K.
- Frontiers in Plant Science, Vol. 10
Modified expression of ZmMYB167 in Brachypodium distachyon and Zea mays leads to increased cell wall lignin and phenolic content
journal, June 2019
- Bhatia, Rakesh; Dalton, Sue; Roberts, Luned A.
- Scientific Reports, Vol. 9, Issue 1
A sorghum NAC gene is associated with variation in biomass properties and yield potential
journal, July 2018
- Xia, Jingnu; Zhao, Yunjun; Burks, Payne
- Plant Direct, Vol. 2, Issue 7
Systems Identification and Characterization of Cell Wall Reassembly and Degradation Related Genes in Glycine max (L.) Merill, a Bioenergy Legume
journal, September 2017
- Nawaz, Muhammad Amjad; Rehman, Hafiz Mamoon; Imtiaz, Muhammad
- Scientific Reports, Vol. 7, Issue 1
Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells
journal, July 2018
- Ogita, Shinjiro; Nomura, Taiji; Kato, Yasuo
- Scientific Reports, Vol. 8, Issue 1
Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum
journal, December 2016
- You, Qi; Zhang, Liwei; Yi, Xin
- Scientific Reports, Vol. 6, Issue 1
Novel tool to quantify cell wall porosity relates wall structure to cell growth and drug uptake
journal, February 2019
- Liu, Xiaohui; Li, Jiazhou; Zhao, Heyu
- Journal of Cell Biology, Vol. 218, Issue 4
A genetic framework for H2O2 induced cell death in Arabidopsis thaliana
journal, October 2015
- Kaurilind, Eve; Xu, Enjun; Brosché, Mikael
- BMC Genomics, Vol. 16, Issue 1
Domestication-driven Gossypium profilin 1 (GhPRF1) gene transduces early flowering phenotype in tobacco by spatial alteration of apical/floral-meristem related gene expression
journal, May 2016
- Pandey, Dhananjay K.; Chaudhary, Bhupendra
- BMC Plant Biology, Vol. 16, Issue 1
An efficient transient expression system for gene function analysis in rose
journal, December 2017
- Lu, Jun; Bai, Mengjuan; Ren, Haoran
- Plant Methods, Vol. 13, Issue 1
Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants
journal, July 2016
- Vargas, Lívia; Cesarino, Igor; Vanholme, Ruben
- Biotechnology for Biofuels, Vol. 9, Issue 1
Dynamics of gene expression during development and expansion of vegetative stem internodes of bioenergy sorghum
journal, June 2017
- Kebrom, Tesfamichael H.; McKinley, Brian; Mullet, John E.
- Biotechnology for Biofuels, Vol. 10, Issue 1
Recent advances in gene function prediction using context-specific coexpression networks in plants
journal, January 2019
- Gupta, Chirag; Pereira, Andy
- F1000Research, Vol. 8
The Arabidopsis RCC1 Family Protein TCF1 Regulates Freezing Tolerance and Cold Acclimation through Modulating Lignin Biosynthesis
journal, September 2015
- Ji, Hongtao; Wang, Youning; Cloix, Catherine
- PLOS Genetics, Vol. 11, Issue 9
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana
journal, January 2019
- Liu, Chang; Yu, Hasi; Li, Laigeng
- PLOS Genetics, Vol. 15, Issue 1
Genome Regions Associated with Functional Performance of Soybean Stem Fibers in Polypropylene Thermoplastic Composites
journal, July 2015
- Reinprecht, Yarmilla; Arif, Muhammad; Simon, Leonardo C.
- PLOS ONE, Vol. 10, Issue 7
Modeling hormonal control of cambium proliferation
journal, February 2017
- Oles, Vladyslav; Panchenko, Alexander; Smertenko, Andrei
- PLOS ONE, Vol. 12, Issue 2
Genome-wide association mapping in winter barley for grain yield and culm cell wall polymer content using the high-throughput CoMPP technique
journal, March 2017
- Bellucci, Andrea; Tondelli, Alessandro; Fangel, Jonatan U.
- PLOS ONE, Vol. 12, Issue 3
SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets
journal, June 2017
- Becker, Michael G.; Walker, Philip L.; Pulgar-Vidal, Nadège C.
- PLOS ONE, Vol. 12, Issue 6
A Transcriptomic Analysis of Xylan Mutants Does Not Support the Existence of a Secondary Cell Wall Integrity System in Arabidopsis.
journalarticle, January 2018
- Faria-Blanc, Nuno; Mortimer, Jenny C.; Dupree, Paul
- Frontiers Media SA
Over-expression of poplar NAC15 gene enhances wood formation in transgenic tobacco
preprint, January 2020
- Yao, Wenjing; Zhang, Dawei; Zhou, Boro
NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants
journal, May 2015
- Nakano, Yoshimi; Yamaguchi, Masatoshi; Endo, Hitoshi
- Frontiers in Plant Science, Vol. 6
The conserved transcription factors, MYB115 and MYB118, control expression of the newly evolved benzoyloxy glucosinolate pathway in Arabidopsis thaliana
journal, May 2015
- Zhang, Yuanyuan; Li, Baohua; Huai, Dongxin
- Frontiers in Plant Science, Vol. 6
Molecular Mechanisms for Vascular Development and Secondary Cell Wall Formation
journal, March 2016
- Yang, Jung Hyun; Wang, Huanzhong
- Frontiers in Plant Science, Vol. 7
Drought Stress Predominantly Endures Arabidopsis thaliana to Pseudomonas syringae Infection
journal, June 2016
- Gupta, Aarti; Dixit, Sandeep K.; Senthil-Kumar, Muthappa
- Frontiers in Plant Science, Vol. 7
The Plant Cell Wall: A Complex and Dynamic Structure As Revealed by the Responses of Genes under Stress Conditions
journal, August 2016
- Houston, Kelly; Tucker, Matthew R.; Chowdhury, Jamil
- Frontiers in Plant Science, Vol. 7
Cell Wall Heterogeneity in Root Development of Arabidopsis
journal, August 2016
- Somssich, Marc; Khan, Ghazanfar Abbas; Persson, Staffan
- Frontiers in Plant Science, Vol. 07
Studying Secondary Growth and Bast Fiber Development: The Hemp Hypocotyl Peeks behind the Wall
journal, November 2016
- Behr, Marc; Legay, Sylvain; Žižková, Eva
- Frontiers in Plant Science, Vol. 7
4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis
journal, January 2017
- Liu, Hao; Guo, Zhenhua; Gu, Fengwei
- Frontiers in Plant Science, Vol. 7
Concurrent Drought Stress and Vascular Pathogen Infection Induce Common and Distinct Transcriptomic Responses in Chickpea
journal, March 2017
- Sinha, Ranjita; Gupta, Aarti; Senthil-Kumar, Muthappa
- Frontiers in Plant Science, Vol. 8
Regulation of Plant Growth and Development: A Review From a Chromatin Remodeling Perspective
journal, August 2018
- Ojolo, Simon P.; Cao, Shijiang; Priyadarshani, S. V. G. N.
- Frontiers in Plant Science, Vol. 9
Regulation of Lignin Biosynthesis and Its Role in Growth-Defense Tradeoffs
journal, September 2018
- Xie, Meng; Zhang, Jin; Tschaplinski, Timothy J.
- Frontiers in Plant Science, Vol. 9
Recent Advances in the Transcriptional Regulation of Secondary Cell Wall Biosynthesis in the Woody Plants
journal, October 2018
- Zhang, Jin; Xie, Meng; Tuskan, Gerald A.
- Frontiers in Plant Science, Vol. 9
Xylan in the Middle: Understanding Xylan Biosynthesis and Its Metabolic Dependencies Toward Improving Wood Fiber for Industrial Processing
journal, February 2019
- Wierzbicki, Martin P.; Maloney, Victoria; Mizrachi, Eshchar
- Frontiers in Plant Science, Vol. 10
Citrus sinensis MYB Transcription Factor CsMYB85 Induce Fruit Juice Sac Lignification Through Interaction With Other CsMYB Transcription Factors
journal, February 2019
- Jia, Ning; Liu, Jiqin; Tan, Penghui
- Frontiers in Plant Science, Vol. 10
Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
journal, October 2019
- Furches, Anna; Kainer, David; Weighill, Deborah
- Frontiers in Plant Science, Vol. 10
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis
journal, October 2019
- Zhao, Kangmei; Lin, Fan; Romero-Gamboa, Sandra P.
- Frontiers in Plant Science, Vol. 10
Xylem Cell Wall Formation in Pioneer Roots and Stems of Populus trichocarpa (Torr. & Gray)
journal, November 2019
- Marzec-Schmidt, Katarzyna; Ludwików, Agnieszka; Wojciechowska, Natalia
- Frontiers in Plant Science, Vol. 10
Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors
journal, January 2020
- Barco, Brenden; Clay, Nicole K.
- Frontiers in Plant Science, Vol. 10
Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in Populus
journal, September 2019
- Kim, Min-Ha; Cho, Jin-Seong; Jeon, Hyung-Woo
- Genes, Vol. 10, Issue 9
Comparative Transcriptome Analysis Reveals Stem Secondary Growth of Grafted Rosa rugosa ‘Rosea’ Scion and R. multiflora ‘Innermis’ Rootstock
journal, February 2020
- Sun, Jing-shuang; Hu, Rui-yang; Lv, Fu-ling
- Genes, Vol. 11, Issue 2
Plant Fibre: Molecular Structure and Biomechanical Properties, of a Complex Living Material, Influencing Its Deconstruction towards a Biobased Composite
journal, July 2016
- Sorieul, Mathias; Dickson, Alan; Hill, Stefan
- Materials, Vol. 9, Issue 8