Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere

Klingeman, Dawn M.; Utturkar, Sagar; Lu, Tse -Yuan S.; Schadt, Christopher W.; Pelletier, Dale A.; Brown, Steve D.

doi:10.1128/genomeA.01344-15

Title: Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere

Journal Article · Thu Nov 12 00:00:00 UTC 2015 · Genome Announcements

DOI: https://doi.org/10.1128/genomeA.01344-15 · OSTI ID:1324203

Klingeman, Dawn M. ^[1]; Utturkar, Sagar ^[2]; Lu, Tse -Yuan S. ^[1]; Schadt, Christopher W. ^[3]; Pelletier, Dale A. ^[3]; Brown, Steve D. ^[3]

Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Univ. of Tennessee, Knoxville, TN (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Univ. of Tennessee, Knoxville, TN (United States)

Draft genome sequences for four Actinobacteria from the genus Streptomyces are presented. Streptomyces is a metabolically diverse genus that is abundant in soils and has been reported in association with plants. The strains described in this study were isolated from the Populus trichocarpa endosphere and rhizosphere.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1324203

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 6 Vol. 3; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (10)

Endophytic actinobacteria of medicinal plants: diversity and bioactivity Golinska, Patrycja; Wypij, Magdalena; Agarkar, Gauravi Antonie van Leeuwenhoek, Vol. 108, Issue 2 https://doi.org/10.1007/s10482-015-0502-7	journal	June 2015
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry Journal of Computational Biology, Vol. 19, Issue 5 https://doi.org/10.1089/cmb.2012.0021	journal	May 2012
Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences Utturkar, Sagar M.; Klingeman, Dawn M.; Land, Miriam L. Bioinformatics, Vol. 30, Issue 19 https://doi.org/10.1093/bioinformatics/btu391	journal	June 2014
Microbial cytochromes P450: biodiversity and biotechnology. Where do cytochromes P450 come from, what do they do and what can they do for us? Kelly, Steven L.; Kelly, Diane E. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 368, Issue 1612 https://doi.org/10.1098/rstb.2012.0476	journal	February 2013
Developmental biology of Streptomyces from the perspective of 100 actinobacterial genome sequences Chandra, Govind; Chater, Keith F. FEMS Microbiology Reviews, Vol. 38, Issue 3 https://doi.org/10.1111/1574-6976.12047	journal	May 2014
Draft Genome Sequence of Rhizobium sp. Strain PDO1-076, a Bacterium Isolated from Populus deltoides Brown, S. D.; Klingeman, D. M.; Lu, T. -Y. S. Journal of Bacteriology, Vol. 194, Issue 9 https://doi.org/10.1128/JB.00198-12	journal	April 2012
Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides Brown, S. D.; Utturkar, S. M.; Klingeman, D. M. Journal of Bacteriology, Vol. 194, Issue 21 https://doi.org/10.1128/JB.01243-12	journal	October 2012
Soil To Genomics: The Streptomyces Chromosome Hopwood, David A. Annual Review of Genetics, Vol. 40, Issue 1 https://doi.org/10.1146/annurev.genet.40.110405.090639	journal	December 2006
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees Shakya, Migun; Gottel, Neil; Castro, Hector PLoS ONE, Vol. 8, Issue 10 https://doi.org/10.1371/journal.pone.0076382	journal	October 2013

Cited By (1)

Targeted Rediscovery and Biosynthesis of the Farnesyl‐Transferase Inhibitor Pepticinnamin E Santa Maria, Kevin C.; Chan, Andrew N.; O'Neill, Erinn M. ChemBioChem, Vol. 20, Issue 11 https://doi.org/10.1002/cbic.201900025	journal	April 2019

Similar Records

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment

Journal Article · Wed Oct 14 00:00:00 UTC 2015 · Frontiers in Microbiology · OSTI ID:1234335

Timm, Collin M.; Campbell, Alicia G.; Utturkar, Sagar M.; +10 more

Isolating a functionally relevant guild of fungi from the root microbiome of Populus

Journal Article · Fri May 27 00:00:00 UTC 2016 · Fungal Ecology · OSTI ID:1327688

Bonito, Gregory; Hameed, Khalid; Ventura, Rafael; +3 more

Genomic signatures in Variovorax enabling colonization of the Populus endosphere

Journal Article · Mon Feb 16 00:00:00 UTC 2026 · mSystems · OSTI ID:3020916

Beals, Delaney G.; Carper, Dana L.; Hochanadel, Leah H.; +6 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES

Title: Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere

Citation Formats

References (10)

Cited By (1)

Similar Records

Related Subjects