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Title: Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere

Abstract

Draft genome sequences for four Actinobacteria from the genus Streptomyces are presented. Streptomyces is a metabolically diverse genus that is abundant in soils and has been reported in association with plants. The strains described in this study were isolated from the Populus trichocarpa endosphere and rhizosphere.

Authors:
 [1];  [2];  [1];  [3];  [3];  [3]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  2. Univ. of Tennessee, Knoxville, TN (United States)
  3. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Univ. of Tennessee, Knoxville, TN (United States)
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1324203
Grant/Contract Number:  
AC05-00OR22725
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 3; Journal Issue: 6; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Klingeman, Dawn M., Utturkar, Sagar, Lu, Tse -Yuan S., Schadt, Christopher W., Pelletier, Dale A., and Brown, Steve D. Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere. United States: N. p., 2015. Web. doi:10.1128/genomeA.01344-15.
Klingeman, Dawn M., Utturkar, Sagar, Lu, Tse -Yuan S., Schadt, Christopher W., Pelletier, Dale A., & Brown, Steve D. Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere. United States. https://doi.org/10.1128/genomeA.01344-15
Klingeman, Dawn M., Utturkar, Sagar, Lu, Tse -Yuan S., Schadt, Christopher W., Pelletier, Dale A., and Brown, Steve D. Thu . "Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere". United States. https://doi.org/10.1128/genomeA.01344-15. https://www.osti.gov/servlets/purl/1324203.
@article{osti_1324203,
title = {Draft genome sequences of four Streptomyces isolates from the Populus trichocarpa root endosphere and rhizosphere},
author = {Klingeman, Dawn M. and Utturkar, Sagar and Lu, Tse -Yuan S. and Schadt, Christopher W. and Pelletier, Dale A. and Brown, Steve D.},
abstractNote = {Draft genome sequences for four Actinobacteria from the genus Streptomyces are presented. Streptomyces is a metabolically diverse genus that is abundant in soils and has been reported in association with plants. The strains described in this study were isolated from the Populus trichocarpa endosphere and rhizosphere.},
doi = {10.1128/genomeA.01344-15},
journal = {Genome Announcements},
number = 6,
volume = 3,
place = {United States},
year = {Thu Nov 12 00:00:00 EST 2015},
month = {Thu Nov 12 00:00:00 EST 2015}
}

Works referenced in this record:

Developmental biology of Streptomyces from the perspective of 100 actinobacterial genome sequences
journal, May 2014


Endophytic actinobacteria of medicinal plants: diversity and bioactivity
journal, June 2015

  • Golinska, Patrycja; Wypij, Magdalena; Agarkar, Gauravi
  • Antonie van Leeuwenhoek, Vol. 108, Issue 2
  • DOI: 10.1007/s10482-015-0502-7

Soil To Genomics: The Streptomyces Chromosome
journal, December 2006


A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013


Draft Genome Sequence of Rhizobium sp. Strain PDO1-076, a Bacterium Isolated from Populus deltoides
journal, April 2012

  • Brown, S. D.; Klingeman, D. M.; Lu, T. -Y. S.
  • Journal of Bacteriology, Vol. 194, Issue 9
  • DOI: 10.1128/JB.00198-12

Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides
journal, October 2012

  • Brown, S. D.; Utturkar, S. M.; Klingeman, D. M.
  • Journal of Bacteriology, Vol. 194, Issue 21
  • DOI: 10.1128/JB.01243-12

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences
journal, June 2014


SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
journal, May 2012

  • Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry
  • Journal of Computational Biology, Vol. 19, Issue 5
  • DOI: 10.1089/cmb.2012.0021

Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010


Microbial cytochromes P450: biodiversity and biotechnology. Where do cytochromes P450 come from, what do they do and what can they do for us?
journal, February 2013

  • Kelly, Steven L.; Kelly, Diane E.
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 368, Issue 1612
  • DOI: 10.1098/rstb.2012.0476

Works referencing / citing this record:

Targeted Rediscovery and Biosynthesis of the Farnesyl‐Transferase Inhibitor Pepticinnamin E
journal, April 2019

  • Santa Maria, Kevin C.; Chan, Andrew N.; O'Neill, Erinn M.
  • ChemBioChem, Vol. 20, Issue 11
  • DOI: 10.1002/cbic.201900025