Draft genome sequence of Thauera sp. strain SWB20, isolated from a Singapore wastewater treatment facility using gel microdroplets

Dichosa, Armand E. K.; Davenport, Karen W.; Li, Po-E; Ahmed, Sanaa A.; Daligault, Hajnalka; Gleasner, Cheryl D.; Kunde, Yuliya; McMurry, Kim; Lo, Chien -Chi; Reitenga, Krista G.; Daughton, Ashlynn R.; Shen, Xiaohong; Frietze, Seth; Wang, Dongping; Johnson, Shannon L.; Drautz-Moses, Daniela I.; Schuster, Stephan; Chain, Patrick S.; Han, Cliff

doi:10.1128/genomeA.00132-15

Title: Draft genome sequence of Thauera sp. strain SWB20, isolated from a Singapore wastewater treatment facility using gel microdroplets

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Abstract

In this study, we report here the genome sequence of Thauera sp. strain SWB20, isolated from a Singaporean wastewater treatment facility using gel microdroplets (GMDs) and single-cell genomics (SCG). This approach provided a single clonal microcolony that was sufficient to obtain a 4.9-Mbp genome assembly of an ecologically relevant Thauera species.

Authors:

Dichosa, Armand E. K. ^[1]; Davenport, Karen W. ^[1]; Li, Po-E ^[1]; Ahmed, Sanaa A. ^[1]; Daligault, Hajnalka ^[1]; Gleasner, Cheryl D. ^[1]; Kunde, Yuliya ^[1]; McMurry, Kim ^[1]; Lo, Chien -Chi ^[1]; Reitenga, Krista G. ^[1]; Daughton, Ashlynn R. ^[1]; Shen, Xiaohong ^[1]; Frietze, Seth ^[1]; Wang, Dongping ^[1]; Johnson, Shannon L. ^[1]; Drautz-Moses, Daniela I. ^[2]; Schuster, Stephan ^[2]; Chain, Patrick S. ^[1]; Han, Cliff ^[1]

Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Nanyang Technological Univ. (Singapore)

Publication Date:: Thu Mar 19 00:00:00 EDT 2015

Research Org.:: Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

Sponsoring Org.:: USDOE

OSTI Identifier:: 1235901

Report Number(s):: LA-UR-15-21346
Journal ID: ISSN 2169-8287

Grant/Contract Number:: AC52-06NA25396

Resource Type:: Accepted Manuscript

Journal Name:: Genome Announcements

Additional Journal Information:: Journal Volume: 3; Journal Issue: 2; Journal ID: ISSN 2169-8287

Publisher:: American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES; 54 ENVIRONMENTAL SCIENCES; Thauera, genome, single cell genomics, gel microdroplets

Citation Formats


                    Dichosa, Armand E. K., Davenport, Karen W., Li, Po-E, Ahmed, Sanaa A., Daligault, Hajnalka, Gleasner, Cheryl D., Kunde, Yuliya, McMurry, Kim, Lo, Chien -Chi, Reitenga, Krista G., Daughton, Ashlynn R., Shen, Xiaohong, Frietze, Seth, Wang, Dongping, Johnson, Shannon L., Drautz-Moses, Daniela I., Schuster, Stephan, Chain, Patrick S., and Han, Cliff. Draft genome sequence of Thauera sp. strain SWB20, isolated from a Singapore wastewater treatment facility using gel microdroplets.  United States: N. p., 2015. 
Web.  doi:10.1128/genomeA.00132-15.

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                    Dichosa, Armand E. K., Davenport, Karen W., Li, Po-E, Ahmed, Sanaa A., Daligault, Hajnalka, Gleasner, Cheryl D., Kunde, Yuliya, McMurry, Kim, Lo, Chien -Chi, Reitenga, Krista G., Daughton, Ashlynn R., Shen, Xiaohong, Frietze, Seth, Wang, Dongping, Johnson, Shannon L., Drautz-Moses, Daniela I., Schuster, Stephan, Chain, Patrick S., & Han, Cliff. Draft genome sequence of Thauera sp. strain SWB20, isolated from a Singapore wastewater treatment facility using gel microdroplets.  United States.  https://doi.org/10.1128/genomeA.00132-15

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                    Dichosa, Armand E. K., Davenport, Karen W., Li, Po-E, Ahmed, Sanaa A., Daligault, Hajnalka, Gleasner, Cheryl D., Kunde, Yuliya, McMurry, Kim, Lo, Chien -Chi, Reitenga, Krista G., Daughton, Ashlynn R., Shen, Xiaohong, Frietze, Seth, Wang, Dongping, Johnson, Shannon L., Drautz-Moses, Daniela I., Schuster, Stephan, Chain, Patrick S., and Han, Cliff. Thu .  
"Draft genome sequence of Thauera sp. strain SWB20, isolated from a Singapore wastewater treatment facility using gel microdroplets".  United States.  https://doi.org/10.1128/genomeA.00132-15.  https://www.osti.gov/servlets/purl/1235901.

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@article{osti_1235901,

  title        = {Draft genome sequence of Thauera sp. strain SWB20, isolated from a Singapore wastewater treatment facility using gel microdroplets},

  author       = {Dichosa, Armand E. K. and Davenport, Karen W. and Li, Po-E and Ahmed, Sanaa A. and Daligault, Hajnalka and Gleasner, Cheryl D. and Kunde, Yuliya and McMurry, Kim and Lo, Chien -Chi and Reitenga, Krista G. and Daughton, Ashlynn R. and Shen, Xiaohong and Frietze, Seth and Wang, Dongping and Johnson, Shannon L. and Drautz-Moses, Daniela I. and Schuster, Stephan and Chain, Patrick S. and Han, Cliff},

  abstractNote = {In this study, we report here the genome sequence of Thauera sp. strain SWB20, isolated from a Singaporean wastewater treatment facility using gel microdroplets (GMDs) and single-cell genomics (SCG). This approach provided a single clonal microcolony that was sufficient to obtain a 4.9-Mbp genome assembly of an ecologically relevant Thauera species.},

  doi          = {10.1128/genomeA.00132-15},

  journal      = {Genome Announcements},

  number       = 2,

  volume       = 3,

  place        = {United States},

  year         = {Thu Mar 19 00:00:00 EDT 2015},

  month        = {Thu Mar 19 00:00:00 EDT 2015}

}

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