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Title: High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp

Abstract

In this paper, we report the high-quality draft genome sequences of four phylogenetically diverse lignocellulose-degrading bacteria isolated from tropical soil (Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.) to elucidate the genetic basis of their ability to degrade lignocellulose. These isolates may provide novel enzymes for biofuel production.

Authors:
ORCiD logo [1];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [4]; ORCiD logo [5]
+ Show Author Affiliations
  1. Joint Bioenergy Institute, Emeryville, California, USA, Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA
  2. Microbiology Department, University of Massachusetts–Amherst, Amherst, Massachusetts, USA
  3. Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  4. Joint Bioenergy Institute, Emeryville, California, USA
  5. Joint Bioenergy Institute, Emeryville, California, USA, Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA, Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA, Department of Earth and Planetary Sciences, University of Tennessee, Knoxville, Tennessee, USA, Institute for Secure and Sustainable Environment, University of Tennessee, Knoxville, Tennessee, USA
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1608709
Alternate Identifier(s):
OSTI ID: 1394468
Grant/Contract Number:  
AC02-05CH11231; AC05-00OR22725
Resource Type:
Published Article
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Name: Genome Announcements Journal Volume: 5 Journal Issue: 18; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
09 BIOMASS FUELS; 60 APPLIED LIFE SCIENCES

Citation Formats

Woo, Hannah L., DeAngelis, Kristen M., Teshima, Hazuki, Davenport, Karen, Daligault, Hajnalka, Erkkila, Tracy, Goodwin, Lynne, Gu, Wei, Lo, Chien-Chi, Munk, Christine, Scholz, Matthew, Xu, Yan, Chain, Patrick, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Simmons, Blake A., and Hazen, Terry C. High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp. United States: N. p., 2017. Web. doi:10.1128/genomeA.00300-17.
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Woo, Hannah L., DeAngelis, Kristen M., Teshima, Hazuki, Davenport, Karen, Daligault, Hajnalka, Erkkila, Tracy, Goodwin, Lynne, Gu, Wei, Lo, Chien-Chi, Munk, Christine, Scholz, Matthew, Xu, Yan, Chain, Patrick, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Simmons, Blake A., & Hazen, Terry C. High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp. United States. https://doi.org/10.1128/genomeA.00300-17
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Woo, Hannah L., DeAngelis, Kristen M., Teshima, Hazuki, Davenport, Karen, Daligault, Hajnalka, Erkkila, Tracy, Goodwin, Lynne, Gu, Wei, Lo, Chien-Chi, Munk, Christine, Scholz, Matthew, Xu, Yan, Chain, Patrick, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Simmons, Blake A., and Hazen, Terry C. Thu . "High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp". United States. https://doi.org/10.1128/genomeA.00300-17.
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@article{osti_1608709,
title = {High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp},
author = {Woo, Hannah L. and DeAngelis, Kristen M. and Teshima, Hazuki and Davenport, Karen and Daligault, Hajnalka and Erkkila, Tracy and Goodwin, Lynne and Gu, Wei and Lo, Chien-Chi and Munk, Christine and Scholz, Matthew and Xu, Yan and Chain, Patrick and Bruce, David and Detter, Chris and Tapia, Roxanne and Han, Cliff and Simmons, Blake A. and Hazen, Terry C.},
abstractNote = {In this paper, we report the high-quality draft genome sequences of four phylogenetically diverse lignocellulose-degrading bacteria isolated from tropical soil (Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.) to elucidate the genetic basis of their ability to degrade lignocellulose. These isolates may provide novel enzymes for biofuel production.},
doi = {10.1128/genomeA.00300-17},
journal = {Genome Announcements},
number = 18,
volume = 5,
place = {United States},
year = {Thu May 04 00:00:00 EDT 2017},
month = {Thu May 04 00:00:00 EDT 2017}
}
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Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/genomeA.00300-17
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Figures / Tables:

TABLE 1 TABLE 1: Metadata of Puerto Rican soil strains and sequencing run details
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Works referenced in this record:

Complete genome sequence of “Enterobacter lignolyticus” SCF1
journal, September 2011

  • DeAngelis, Kristen M.; D’Haeseleer, Patrik; Chivian, Dylan
  • Standards in Genomic Sciences, Vol. 5, Issue 1
  • DOI: 10.4056/sigs.2104875

The β-Ketoadipate Pathway And The Biology Of Self-Identity
journal, October 1996

Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils
journal, February 2014

  • Woo, Hannah L.; Hazen, Terry C.; Simmons, Blake A.
  • Systematic and Applied Microbiology, Vol. 37, Issue 1
  • DOI: 10.1016/j.syapm.2013.10.001

Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2
journal, January 2014

  • Woo, Hannah L.; Ballor, Nicholas R.; Hazen, Terry C.
  • Standards in Genomic Sciences, Vol. 9, Issue 1
  • DOI: 10.1186/1944-3277-9-19

Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil
journal, May 2014

Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1
journal, June 2013

Global-Scale Similarities in Nitrogen Release Patterns During Long-Term Decomposition
journal, January 2007

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