The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes
Abstract
Comparisons between the fecal microbiota of humans from industrialized and non-industrialized communities indicate a pronounced impact of westernization on the diversity and composition of the human gut microbiota. However, the exact consequences of westernization on community characteristics are still insufficiently understood, and the ecological processes that drive differences have not been elucidated. Here we have compared the fecal microbiota of adults from two non-industrialized regions in Papua New Guinea (PNG) with that of United States (US) residents. Papua New Guineans harbor communities with greater bacterial diversity but lower inter-individual variation. Although the fecal microbiota in PNG and US was largely dominated by shared bacterial lineages, the relative abundance of 25 families, 45 genera, and 230 species-level OTUs differed, and 47 core OTUs in PNG were undetectable in US residents. To gain insight into the ecological mechanisms that cause the observed differences, we quantified community assembly processes in PNG and US microbiomes using a null modeling approach. This analysis demonstrated a significant higher rate of bacterial dispersal in PNG and divergent selective environments in the US. Interestingly, equivalent findings were obtained for other datasets comparing industrialized and non-industrialized microbiomes. Overall, the findings demonstrate a dominant role for microbial dispersal in shapingmore »
- Authors:
-
- Univ. of Alberta, Edmonton, AB (Canada); Univ. of Nebraska, Lincoln, NE (United States). Dept. of Food Science and Technology
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Div.
- Univ. of Nebraska, Lincoln, NE (United States). Dept. of Food Science and Technology
- Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Lab., Woods Hole, MA (United States)
- Papua New Guinea Inst. of Medical Research, Goroka, Eastern Highlands Province (Papua New Guinea)
- Papua New Guinea Inst. of Medical Research, Goroka, Eastern Highlands Province (Papua New Guinea); Federation Univ. Australia, Churchill, VIC (Australia). School of Applied and Biomedical Sciences
- Univ. of Alberta, Edmonton, AB (Canada). Depts. of Agriculture, Food, and Nutritional Science, and Biological Sciences; Univ. of Nebraska, Lincoln, NE (United States). Dept. of Food Science and Technology
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1182902
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Cell Reports
- Additional Journal Information:
- Journal Volume: 11; Journal Issue: 4; Journal ID: ISSN 2211-1247
- Publisher:
- Elsevier
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; fecal microbiota; papua new guinea
Citation Formats
Martínez, Inés, Stegen, James C., Maldonado-Gómez, Maria X., Eren, A. Murat, Siba, Peter M., Greenhill, Andrew R., and Walter, Jens. The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes. United States: N. p., 2015.
Web. doi:10.1016/j.celrep.2015.03.049.
Martínez, Inés, Stegen, James C., Maldonado-Gómez, Maria X., Eren, A. Murat, Siba, Peter M., Greenhill, Andrew R., & Walter, Jens. The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes. United States. https://doi.org/10.1016/j.celrep.2015.03.049
Martínez, Inés, Stegen, James C., Maldonado-Gómez, Maria X., Eren, A. Murat, Siba, Peter M., Greenhill, Andrew R., and Walter, Jens. Wed .
"The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes". United States. https://doi.org/10.1016/j.celrep.2015.03.049. https://www.osti.gov/servlets/purl/1182902.
@article{osti_1182902,
title = {The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes},
author = {Martínez, Inés and Stegen, James C. and Maldonado-Gómez, Maria X. and Eren, A. Murat and Siba, Peter M. and Greenhill, Andrew R. and Walter, Jens},
abstractNote = {Comparisons between the fecal microbiota of humans from industrialized and non-industrialized communities indicate a pronounced impact of westernization on the diversity and composition of the human gut microbiota. However, the exact consequences of westernization on community characteristics are still insufficiently understood, and the ecological processes that drive differences have not been elucidated. Here we have compared the fecal microbiota of adults from two non-industrialized regions in Papua New Guinea (PNG) with that of United States (US) residents. Papua New Guineans harbor communities with greater bacterial diversity but lower inter-individual variation. Although the fecal microbiota in PNG and US was largely dominated by shared bacterial lineages, the relative abundance of 25 families, 45 genera, and 230 species-level OTUs differed, and 47 core OTUs in PNG were undetectable in US residents. To gain insight into the ecological mechanisms that cause the observed differences, we quantified community assembly processes in PNG and US microbiomes using a null modeling approach. This analysis demonstrated a significant higher rate of bacterial dispersal in PNG and divergent selective environments in the US. Interestingly, equivalent findings were obtained for other datasets comparing industrialized and non-industrialized microbiomes. Overall, the findings demonstrate a dominant role for microbial dispersal in shaping the human gut microbiota in non-industrialized societies, and point to differential selection pressures across individuals as a major factor shaping microbiomes associated with modern lifestyle.},
doi = {10.1016/j.celrep.2015.03.049},
journal = {Cell Reports},
number = 4,
volume = 11,
place = {United States},
year = {Wed Apr 01 00:00:00 EDT 2015},
month = {Wed Apr 01 00:00:00 EDT 2015}
}
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- Frontiers in Microbiology, Vol. 7
Variations in the Post-weaning Human Gut Metagenome Profile As Result of Bifidobacterium Acquisition in the Western Microbiome
journal, July 2016
- Soverini, Matteo; Rampelli, Simone; Turroni, Silvia
- Frontiers in Microbiology, Vol. 07
Impact of Westernized Diet on Gut Microbiota in Children on Leyte Island
journal, February 2017
- Nakayama, Jiro; Yamamoto, Azusa; Palermo-Conde, Ladie A.
- Frontiers in Microbiology, Vol. 8
Geography, Ethnicity or Subsistence-Specific Variations in Human Microbiome Composition and Diversity
journal, June 2017
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The Gut Microbiota of Healthy Chilean Subjects Reveals a High Abundance of the Phylum Verrucomicrobia
journal, June 2017
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Linking the Gut Microbial Ecosystem with the Environment: Does Gut Health Depend on Where We Live?
journal, October 2017
- Tasnim, Nishat; Abulizi, Nijiati; Pither, Jason
- Frontiers in Microbiology, Vol. 8
Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy
journal, October 2017
- De Filippo, Carlotta; Di Paola, Monica; Ramazzotti, Matteo
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Diversity Generator Mechanisms Are Essential Components of Biological Systems: The Two Queen Hypothesis
journal, February 2018
- Muraille, Eric
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Gut Microbiota in Tibetan Herdsmen Reflects the Degree of Urbanization
journal, July 2018
- Li, Huan; Li, Tongtong; Li, Xiangzhen
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The Gut Microbiota in the Pathogenesis and Therapeutics of Inflammatory Bowel Disease
journal, September 2018
- Zuo, Tao; Ng, Siew C.
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The Capacity of the Fecal Microbiota From Malawian Infants to Ferment Resistant Starch
journal, June 2019
- Wang, Yanan; Mortimer, Elissa K.; Katundu, Kondwani G. H.
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Impact of a Nomadic Pastoral Lifestyle on the Gut Microbiome in the Fulani Living in Nigeria
journal, September 2019
- Afolayan, Ayorinde O.; Ayeni, Funmilola A.; Moissl-Eichinger, Christine
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Consequences of Domestication on Gut Microbiome: A Comparative Study Between Wild Gaur and Domestic Mithun
journal, February 2020
- Prabhu, Vandana R.; Kamalakkannan, Ranganathan
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The Challenge of Maintaining a Healthy Microbiome during Long-Duration Space Missions
journal, July 2016
- Voorhies, Alexander A.; Lorenzi, Hernan A.
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Ecology and Evolution of the Human Microbiota: Fire, Farming and Antibiotics
journal, September 2015
- Gillings, Michael; Paulsen, Ian; Tetu, Sasha
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Does Soil Contribute to the Human Gut Microbiome?
journal, August 2019
- Blum, Winfried E. H.; Zechmeister-Boltenstern, Sophie; Keiblinger, Katharina M.
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Intestinal Barrier Function in Chronic Kidney Disease
journal, July 2018
- Meijers, Björn; Farré, Ricard; Dejongh, Sander
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Reciprocal Interactions Between Gut Microbiota and Host Social Behavior
text, January 2018
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- ETH Zurich
Intestinal parasitic infection alters bacterial gut microbiota in children
journal, January 2019
- Toro-Londono, Miguel A.; Bedoya-Urrego, Katherine; Garcia-Montoya, Gisela M.
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