Compositions and methods for inducing HIV-1 antibodies
Abstract
In certain aspects the invention provides HIV-1 immunogens, including envelopes (CH0848) and selections there—from, and methods for swarm immunizations using combinations of HIV-1 envelopes.
- Inventors:
- Issue Date:
- Research Org.:
- Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1892604
- Patent Number(s):
- 11246920
- Application Number:
- 16/081,771
- Assignee:
- Duke University (Durham, NC); Triad National Security, LLC (Los Alamos, NM)
- Patent Classifications (CPCs):
-
A - HUMAN NECESSITIES A61 - MEDICAL OR VETERINARY SCIENCE A61K - PREPARATIONS FOR MEDICAL, DENTAL, OR TOILET PURPOSES
A - HUMAN NECESSITIES A61 - MEDICAL OR VETERINARY SCIENCE A61P - SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- DOE Contract Number:
- AC52-06NA25396
- Resource Type:
- Patent
- Resource Relation:
- Patent File Date: 03/03/2017
- Country of Publication:
- United States
- Language:
- English
Citation Formats
Haynes, Barton F., Bonsignori, Mattia, Korber, Bette T., Hraber, Peter T., and Saunders, Kevin. Compositions and methods for inducing HIV-1 antibodies. United States: N. p., 2022.
Web.
Haynes, Barton F., Bonsignori, Mattia, Korber, Bette T., Hraber, Peter T., & Saunders, Kevin. Compositions and methods for inducing HIV-1 antibodies. United States.
Haynes, Barton F., Bonsignori, Mattia, Korber, Bette T., Hraber, Peter T., and Saunders, Kevin. Tue .
"Compositions and methods for inducing HIV-1 antibodies". United States. https://www.osti.gov/servlets/purl/1892604.
@article{osti_1892604,
title = {Compositions and methods for inducing HIV-1 antibodies},
author = {Haynes, Barton F. and Bonsignori, Mattia and Korber, Bette T. and Hraber, Peter T. and Saunders, Kevin},
abstractNote = {In certain aspects the invention provides HIV-1 immunogens, including envelopes (CH0848) and selections there—from, and methods for swarm immunizations using combinations of HIV-1 envelopes.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2022},
month = {2}
}
Works referenced in this record:
Structure and immune recognition of trimeric pre-fusion HIV-1 Env
journal, October 2014
- Pancera, Marie; Zhou, Tongqing; Druz, Aliaksandr
- Nature, Vol. 514, Issue 7523
Trimer Stabilizing HIV Envelope Protein Mutations
patent-application, March 2018
- Rutten, Lucy; Truan, Daphne; Strokappe, Nika Mindy
- US Patent Application 15/704,651; 2018/0072777 Al
Soluble Stabilized Trimeric HIV Env Proteins and Uses Thereof
patent-application, March 2011
- Olson, William C.; Maddon, Paul J.; Franti, Michael
- US Patent Application 12/308681; 20110076298
Recognition of synthetic glycopeptides by HIV-1 broadly neutralizing antibodies and their unmutated ancestors
journal, October 2013
- Alam, S. M.; Dennison, S. M.; Aussedat, B.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 45
Isolation of a Monoclonal Antibody That Targets the Alpha-2 Helix of gp120 and Represents the Initial Autologous Neutralizing-Antibody Response in an HIV-1 Subtype C-Infected Individual
journal, May 2011
- Gray, E. S.; Moody, M. A.; Wibmer, C. K.
- Journal of Virology, Vol. 85, Issue 15
Atomic structure of the ectodomain from HIV-1 gp41
journal, May 1997
- Weissenhorn, W.; Dessen, A.; Harrison, S. C.
- Nature, Vol. 387, Issue 6631
B cells extract and present immobilized antigen: implications for affinity discrimination
journal, February 2000
- Batista, Facundo D.; Neuberger, Michael S.
- The EMBO Journal, Vol. 19, Issue 4
Issues in searching molecular sequence databases
journal, February 1994
- Altschul, Stephen F.; Boguski, Mark S.; Gish, Warren
- Nature Genetics, Vol. 6, Issue 2
Characterization of an HIV-1 point mutant blocked in envelope glycoprotein cleavage
journal, January 1990
- Guo, Hong-Guang; Veronese, Fulvia Dimarzo; Tschachler, Erwin
- Virology, Vol. 174, Issue 1
Quaternary contact in the initial interaction of CD4 with the HIV-1 envelope trimer
journal, February 2017
- Liu, Qingbo; Acharya, Priyamvada; Dolan, Michael A.
- Nature Structural & Molecular Biology, Vol. 24, Issue 4
HIV-1 envelope muteins lacking hypervariable domains
patent, August 1998
- Haigwood, Nancy L.
- US Patent Document 5,792,459
Structures of HIV-1 Env V1V2 with broadly neutralizing antibodies reveal commonalities that enable vaccine design
journal, December 2015
- Gorman, Jason; Soto, Cinque; Yang, Max M.
- Nature Structural & Molecular Biology, Vol. 23, Issue 1
Vaccine Elicitation of High Mannose-Dependent Neutralizing Antibodies against the V3-Glycan Broadly Neutralizing Epitope in Nonhuman Primates
journal, February 2017
- Saunders, Kevin O.; Nicely, Nathan I.; Wiehe, Kevin
- Cell Reports, Vol. 18, Issue 9
HIV-1 vaccine design through minimizing envelope metastability
journal, November 2018
- He, Linling; Kumar, Sonu; Allen, Joel D.
- Science Advances, Vol. 4, Issue 11
Structure and Dynamics of the Native HIV-1 Env Trimer
journal, March 2015
- Munro, James B.; Mothes, Walther
- Journal of Virology, Vol. 89, Issue 11
Immunoglobulin Gene Insertions and Deletions in the Affinity Maturation of HIV-1 Broadly Reactive Neutralizing Antibodies
journal, September 2014
- Kepler, Thomas B.; Liao, Hua-Xin; Alam, S. Munir
- Cell Host & Microbe, Vol. 16, Issue 3
Recombinant Mycobacterium bovis Bacillus Calmette-Guérin Elicits Human Immunodeficiency Virus Type 1 Envelope-Specific T Lymphocytes at Mucosal Sites
journal, July 2007
- Yu, Jae-Sung; Peacock, James W.; Jacobs, William R.
- Clinical and Vaccine Immunology, Vol. 14, Issue 7
Associating HIV-1 envelope glycoprotein structures with states on the virus observed by smFRET
journal, April 2019
- Lu, Maolin; Ma, Xiaochu; Castillo-Menendez, Luis R.
- Nature, Vol. 568, Issue 7752
Immunogenicity of Stabilized HIV-1 Envelope Trimers with Reduced Exposure of Non-neutralizing Epitopes
journal, December 2015
- de Taeye, Steven W.; Ozorowski, Gabriel; Torrents de la Peña, Alba
- Cell, Vol. 163, Issue 7
AFP-specific immunotherapy impairs growth of autochthonous hepatocellular carcinoma in mice
journal, January 2011
- Cany, Jeannette; Barteau, Benoît; Tran, Lucile
- Journal of Hepatology, Vol. 54, Issue 1
Global Panel of HIV-1 Env Reference Strains for Standardized Assessments of Vaccine-Elicited Neutralizing Antibodies
journal, December 2013
- deCamp, A.; Hraber, P.; Bailer, R. T.
- Journal of Virology, Vol. 88, Issue 5
Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale
journal, February 2016
- Juette, Manuel F.; Terry, Daniel S.; Wasserman, Michael R.
- Nature Methods, Vol. 13, Issue 4
Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design
journal, June 2018
- Rantalainen, Kimmo; Berndsen, Zachary T.; Murrell, Sasha
- Cell Reports, Vol. 23, Issue 11
Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data
journal, January 2013
- Yaari, Gur; Vander Heiden, Jason A.; Uduman, Mohamed
- Frontiers in Immunology, Vol. 4
Vaccine-Elicited Tier 2 HIV-1 Neutralizing Antibodies Bind to Quaternary Epitopes Involving Glycan-Deficient Patches Proximal to the CD4 Binding Site
journal, May 2015
- Crooks, Ema T.; Tong, Tommy; Chakrabarti, Bimal
- PLOS Pathogens, Vol. 11, Issue 5
Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth
journal, October 2018
- Wagh, Kshitij; Kreider, Edward F.; Li, Yingying
- Cell Reports, Vol. 25, Issue 4
Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta
journal, September 2016
- Wang, Ray Yu-Ruei; Song, Yifan; Barad, Benjamin A.
- eLife, Vol. 5
Basic local alignment search tool
journal, October 1990
- Altschul, Stephen F.; Gish, Warren; Miller, Webb
- Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
Composition and Antigenic Effects of Individual Glycan Sites of a Trimeric HIV-1 Envelope Glycoprotein
journal, March 2016
- Behrens, Anna-Janina; Vasiljevic, Snezana; Pritchard, Laura K.
- Cell Reports, Vol. 14, Issue 11
CLUSTAL: a package for performing multiple sequence alignment on a microcomputer
journal, December 1988
- Higgins, Desmond G.; Sharp, Paul M.
- Gene, Vol. 73, Issue 1, p. 237-244
Novel HIV-1 Envelope Glycoprotein
patent-application, October 2011
- Phogat, Sanjay K.; Koff, Wayne C.; King, Charles Richter
- US Patent Application 13/039086; 20110262488
Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering
journal, February 2015
- Tria, Giancarlo; Mertens, Haydyn D. T.; Kachala, Michael
- IUCrJ, Vol. 2, Issue 2
Features and development of Coot
journal, March 2010
- Emsley, P.; Lohkamp, B.; Scott, W. G.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
Topological Layers in the HIV-1 gp120 Inner Domain Regulate gp41 Interaction and CD4-Triggered Conformational Transitions
journal, March 2010
- Finzi, Andrés; Xiang, Shi-Hua; Pacheco, Beatriz
- Molecular Cell, Vol. 37, Issue 5
Endoproteolytic cleavage of gp160 is required for the activation of human immunodeficiency virus
journal, April 1988
- McCune, Joseph M.; Rabin, Linda B.; Feinberg, Mark B.
- Cell, Vol. 53, Issue 1
Monitoring and interpreting the intrinsic features of somatic hypermutation
journal, April 1998
- Neuberger, Michael S.; Ehrenstein, Michael K.; Klix, Norman
- Immunological Reviews, Vol. 162, Issue 1
Purification and purity assessment of RNA molecules synthesized with modified nucleosides
patent-application, November 2017
- Weissman, Drew; Kariko, Katalin
- US Patent Application 15/664036; 20170327842
Homology models of the HIV-1 attachment inhibitor BMS-626529 bound to gp120 suggest a unique mechanism of action: BMS-626529, Proposed Mechanism of Action
journal, December 2014
- Langley, David R.; Roy Kimura, S.; Sivaprakasam, Prasanna
- Proteins: Structure, Function, and Bioinformatics, Vol. 83, Issue 2
Antibodies VRC01 and 10E8 Neutralize HIV-1 with High Breadth and Potency Even with Ig-Framework Regions Substantially Reverted to Germline
journal, January 2014
- Georgiev, Ivelin S.; Rudicell, Rebecca S.; Saunders, Kevin O.
- The Journal of Immunology, Vol. 192, Issue 3
Method of inducing the production of protective anti-HIV-1 antibodies
patent-application, September 2016
- Haynes, Barton F.; Liao, Hua-Xin; Tomaras, Georgia
- US Patent Application 15/056655; 20160271244
Recombinant HIV-1 Envelope Proteins and Their Use
patent-application, August 2017
- Kwong, Peter; Pancera, MArie; Zhou, Tongqing
- US Patent Application 15/508885; 20170233441
Presenting native-like HIV-1 envelope trimers on ferritin nanoparticles improves their immunogenicity
journal, September 2015
- Sliepen, Kwinten; Ozorowski, Gabriel; Burger, Judith A.
- Retrovirology, Vol. 12, Issue 1
Passenger transgenes reveal intrinsic specificity of the antibody hypermutation mechanism: clustering, polarity, and specific hot spots.
journal, March 1993
- Betz, A. G.; Rada, C.; Pannell, R.
- Proceedings of the National Academy of Sciences, Vol. 90, Issue 6
Vaccine Induction of Antibodies against a Structurally Heterogeneous Site of Immune Pressure within HIV-1 Envelope Protein Variable Regions 1 and 2
journal, January 2013
- Liao, Hua-Xin; Bonsignori, Mattia; Alam, S. Munir
- Immunity, Vol. 38, Issue 1
Generation of Mucosal Anti-Human Immunodeficiency Virus Type 1 T-Cell Responses by Recombinant Mycobacterium smegmatis ▿
journal, November 2006
- Yu, Jae-Sung; Peacock, James W.; Vanleeuwen, Stacie
- Clinical and Vaccine Immunology, Vol. 13, Issue 11
Cleavage-Independent HIV-1 Env Trimers Engineered as Soluble Native Spike Mimetics for Vaccine Design
journal, April 2015
- Sharma, Shailendra Kumar; de Val, Natalia; Bale, Shridhar
- Cell Reports, Vol. 11, Issue 4
HIV-1 Neutralizing Antibodies with Limited Hypermutation from an Infant
journal, June 2016
- Simonich, Cassandra A.; Williams, Katherine L.; Verkerke, Hans P.
- Cell, Vol. 166, Issue 1
Mutational analysis of the human immunodeficiency virus type 1 env gene product proteolytic cleavage site
journal, May 1990
- Bosch, V.; Pawlita, M.
- Journal of Virology, Vol. 64, Issue 5
Induction of Antibodies in Rhesus Macaques That Recognize a Fusion-Intermediate Conformation of HIV-1 gp41
journal, November 2011
- Dennison, S. Moses; Sutherland, Laura L.; Jaeger, Frederick H.
- PLoS ONE, Vol. 6, Issue 11
Purification and Purity Assessment of RNA Molecules Synthesized with Modified Nucleosides
patent-application, February 2016
- Weissman, Drew; Kariko, Katalin
- US Patent Application 14/776,525; 2016/0032316 Al
A Highly Conserved gp120 Inner Domain Residue Modulates Env Conformation and Trimer Stability
journal, October 2016
- Ding, Shilei; Tolbert, William D.; Prévost, Jérémie
- Journal of Virology, Vol. 90, Issue 19
Molecular Mechanisms of Antibody Somatic Hypermutation
journal, June 2007
- Di Noia, Javier M.; Neuberger, Michael S.
- Annual Review of Biochemistry, Vol. 76, Issue 1
Genetic Signatures in the Envelope Glycoproteins of HIV-1 that Associate with Broadly Neutralizing Antibodies
journal, October 2010
- Gnanakaran, S.; Daniels, Marcus G.; Bhattacharya, Tanmoy
- PLoS Computational Biology, Vol. 6, Issue 10
N332-Directed Broadly Neutralizing Antibodies Use Diverse Modes of HIV-1 Recognition: Inferences from Heavy-Light Chain Complementation of Function
journal, February 2013
- Pancera, Marie; Yang, Yongping; Louder, Mark K.
- PLoS ONE, Vol. 8, Issue 2
Tiered Categorization of a Diverse Panel of HIV-1 Env Pseudoviruses for Assessment of Neutralizing Antibodies
journal, November 2009
- Seaman, M. S.; Janes, H.; Hawkins, N.
- Journal of Virology, Vol. 84, Issue 3
Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6
journal, May 2015
- Grant, Timothy; Grigorieff, Nikolaus
- eLife, Vol. 4
Oligomeric Structure of the Human Immunodeficiency Virus Type 1 Envelope Protein on the Virion Surface
journal, August 2002
- Center, Rob J.; Leapman, Richard D.; Lebowitz, Jacob
- Journal of Virology, Vol. 76, Issue 15
Improving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization
journal, August 2017
- Torrents de la Peña, Alba; Julien, Jean-Philippe; de Taeye, Steven W.
- Cell Reports, Vol. 20, Issue 8
EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy
journal, August 2015
- Barad, Benjamin A.; Echols, Nathaniel; Wang, Ray Yu-Ruei
- Nature Methods, Vol. 12, Issue 10
Crystal structures of trimeric HIV envelope with entry inhibitors BMS-378806 and BMS-626529
journal, August 2017
- Pancera, Marie; Lai, Yen-Ting; Bylund, Tatsiana
- Nature Chemical Biology, Vol. 13, Issue 10
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
journal, June 1998
- Kwong, Peter D.; Wyatt, Richard; Robinson, James
- Nature, Vol. 393, Issue 6686
Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design
journal, May 2016
- Burton, Dennis R.; Hangartner, Lars
- Annual Review of Immunology, Vol. 34, Issue 1
Boosting of HIV envelope CD4 binding site antibodies with long variable heavy third complementarity determining region in the randomized double blind RV305 HIV-1 vaccine trial
journal, February 2017
- Easterhoff, David; Moody, M. Anthony; Fera, Daniela
- PLOS Pathogens, Vol. 13, Issue 2
Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site
journal, September 2016
- Gristick, Harry B.; von Boehmer, Lotta; West Jr, Anthony P.
- Nature Structural & Molecular Biology, Vol. 23, Issue 10
Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV
journal, July 2018
- Dingens, Adam S.; Acharya, Priyamvada; Haddox, Hugh K.
- PLOS Pathogens, Vol. 14, Issue 7
Polyvalent immunogen
patent-application, August 2003
- Haynes, Barton F.; Korber, Bette T.; De Lorimier, Robert M.
- US Patent Document 10/289228; 20030147888
Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer
journal, March 2016
- Lee, J. H.; Ozorowski, G.; Ward, A. B.
- Science, Vol. 351, Issue 6277
Promiscuous Glycan Site Recognition by Antibodies to the High-Mannose Patch of gp120 Broadens Neutralization of HIV
journal, May 2014
- Sok, D.; Doores, K. J.; Briney, B.
- Science Translational Medicine, Vol. 6, Issue 236
Structural basis of coreceptor recognition by HIV-1 envelope spike
journal, December 2018
- Shaik, Md Munan; Peng, Hanqin; Lu, Jianming
- Nature, Vol. 565, Issue 7739
RNA Containing Modified Nucleosides and Methods of Use Thereof
patent-application, October 2013
- Kariko, Katalin; Weissman, Drew
- US Patent Application 13/839155; 20130261172
Nucleic acids encoding modified human immunodeficiency virus type 1 (HIV-1) group M consensus envelope glycoproteins
patent, December 2011
- Haynes, Barton F.; Gao, Feng; Korber, Bette T.
- US Patent Document 8,071,107
Multidonor Analysis Reveals Structural Elements, Genetic Determinants, and Maturation Pathway for HIV-1 Neutralization by VRC01-Class Antibodies
journal, August 2013
- Zhou, Tongqing; Zhu, Jiang; Wu, Xueling
- Immunity, Vol. 39, Issue 2
Nanotechnology in therapeutics: a focus on nanoparticles as a drug delivery system
journal, August 2012
- Bamrungsap, Suwussa; Zhao, Zilong; Chen, Tao
- Nanomedicine, Vol. 7, Issue 8
Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120
journal, June 2012
- West, Anthony P.; Diskin, Ron; Nussenzweig, Michel C.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 30
Improved tools for biological sequence comparison.
journal, April 1988
- Pearson, W. R.; Lipman, D. J.
- Proceedings of the National Academy of Sciences, Vol. 85, Issue 8, p. 2444-2448
Prevalence of broadly neutralizing antibody responses during chronic HIV-1 infection
journal, January 2014
- Hraber, Peter; Seaman, Michael S.; Bailer, Robert T.
- AIDS, Vol. 28, Issue 2
RNA Containing Modified Nucleosides and Methods of Use Thereof
patent-application, May 2013
- Kariko, Katalin; Weissman, Drew
- US Patent Application 13/585517; 20130111615
CATNAP: a tool to compile, analyze and tally neutralizing antibody panels
journal, June 2015
- Yoon, Hyejin; Macke, Jennifer; West, Anthony P.
- Nucleic Acids Research, Vol. 43, Issue W1
The Neutralization Breadth of HIV-1 Develops Incrementally over Four Years and Is Associated with CD4+ T Cell Decline and High Viral Load during Acute Infection
journal, March 2011
- Gray, E. S.; Madiga, M. C.; Hermanus, T.
- Journal of Virology, Vol. 85, Issue 10
Initial B-Cell Responses to Transmitted Human Immunodeficiency Virus Type 1: Virion-Binding Immunoglobulin M (IgM) and IgG Antibodies Followed by Plasma Anti-gp41 Antibodies with Ineffective Control of Initial Viremia
journal, October 2008
- Tomaras, G. D.; Yates, N. L.; Liu, P.
- Journal of Virology, Vol. 82, Issue 24, p. 12449-12463
Stable Docking of Neutralizing Human Immunodeficiency Virus Type 1 gp41 Membrane-Proximal External Region Monoclonal Antibodies 2F5 and 4E10 Is Dependent on the Membrane Immersion Depth of Their Epitope Regions
journal, July 2009
- Dennison, S. M.; Stewart, S. M.; Stempel, K. C.
- Journal of Virology, Vol. 83, Issue 19
Conserved residues in the coiled-coil pocket of human immunodeficiency virus type 1 gp41 are essential for viral replication and interhelical interaction
journal, November 2004
- Mo, Hongmei; Konstantinidis, Alex K.; Stewart, Kent D.
- Virology, Vol. 329, Issue 2
The Nucleotide-Replacement Spectrum Under Somatic Hypermutation Exhibits Microsequence Dependence That Is Strand-Symmetric and Distinct from That Under Germline Mutation
journal, February 2000
- Cowell, Lindsay G.; Kepler, Thomas B.
- The Journal of Immunology, Vol. 164, Issue 4
Role of HIV membrane in neutralization by two broadly neutralizing antibodies
journal, November 2009
- Alam, S. M.; Morelli, M.; Dennison, S. M.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 48
Correction for Doores et al., Two Classes of Broadly Neutralizing Antibodies within a Single Lineage Directed to the High-Mannose Patch of HIV Envelope
journal, June 2015
- Doores, Katie J.; Kong, Leopold; Krumm, Stefanie A.
- Journal of Virology, Vol. 89, Issue 12
Vaccination with ALVAC and AIDSVAX to Prevent HIV-1 Infection in Thailand
journal, December 2009
- Rerks-Ngarm, Supachai; Pitisuttithum, Punnee; Nitayaphan, Sorachai
- New England Journal of Medicine, Vol. 361, Issue 23
Mosaic clade M human immunodeficiency virus type 1 (HIV-1) envelope immunogens
patent, May 2011
- Korber, Bette T.; Fischer, William M.; Liao, Hua-Xin
- US Patent Document 7,951,377
A Phase IIA Randomized Clinical Trial of a Multiclade HIV-1 DNA Prime Followed by a Multiclade rAd5 HIV-1 Vaccine Boost in Healthy Adults (HVTN204)
journal, August 2011
- Churchyard, Gavin J.; Morgan, Cecilia; Adams, Elizabeth
- PLoS ONE, Vol. 6, Issue 8
Sequence-Intrinsic Mechanisms that Target AID Mutational Outcomes on Antibody Genes
journal, November 2015
- Yeap, Leng-Siew; Hwang, Joyce K.; Du, Zhou
- Cell, Vol. 163, Issue 5
Optimization and validation of the TZM-bl assay for standardized assessments of neutralizing antibodies against HIV-1
journal, July 2014
- Sarzotti-Kelsoe, Marcella; Bailer, Robert T.; Turk, Ellen
- Journal of Immunological Methods, Vol. 409
Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01
journal, July 2010
- Zhou, T.; Georgiev, I.; Wu, X.
- Science, Vol. 329, Issue 5993
Developing an HIV vaccine
journal, March 2017
- Haynes, Barton F.; Burton, Dennis R.
- Science, Vol. 355, Issue 6330
Human Immunodeficiency Virus Type 1 env Clones from Acute and Early Subtype B Infections for Standardized Assessments of Vaccine-Elicited Neutralizing Antibodies
journal, July 2005
- Li, M.; Gao, F.; Mascola, J. R.
- Journal of Virology, Vol. 79, Issue 16
Plasticity and Epitope Exposure of the HIV-1 Envelope Trimer
journal, June 2017
- Powell, Rebecca L. R.; Totrov, Maxim; Itri, Vincenza
- Journal of Virology, Vol. 91, Issue 17
Modified GP140 Envelope Polypeptides of HIV-1 Isolates, Compositions, Stabilized Trimeric Complexes, and Uses Thereof
patent-application, October 2011
- Dey, Antu K.; Moore, John P.; Olsen, William C.
- US Patent Application 13/100,941; 2011/0250220 Al
Adjuvants for human vaccines
journal, June 2012
- Alving, Carl R.; Peachman, Kristina K.; Rao, Mangala
- Current Opinion in Immunology, Vol. 24, Issue 3
Broadly Neutralizing Antibody 8ANC195 Recognizes Closed and Open States of HIV-1 Env
journal, September 2015
- Scharf, Louise; Wang, Haoqing; Gao, Han
- Cell, Vol. 162, Issue 6
Cooperation of B Cell Lineages in Induction of HIV-1-Broadly Neutralizing Antibodies
journal, July 2014
- Gao, Feng; Bonsignori, Mattia; Liao, Hua-Xin
- Cell, Vol. 158, Issue 3
RNA Containing Modified Nucleosides and Methods of Use Thereof
patent-application, February 2017
- Kariko, Katalin; Weissman, Drew
- US Patent Application 15/339,363; 2017/0043037 Al
HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies
journal, September 2016
- Steichen, Jon M.; Kulp, Daniel W.; Tokatlian, Talar
- Immunity, Vol. 45, Issue 3
Presenting native-like trimeric HIV-1 antigens with self-assembling nanoparticles
journal, June 2016
- He, Linling; de Val, Natalia; Morris, Charles D.
- Nature Communications, Vol. 7, Issue 1
Molecular architecture of native HIV-1 gp120 trimers
journal, July 2008
- Liu, Jun; Bartesaghi, Alberto; Borgnia, Mario J.
- Nature, Vol. 455, Issue 7209
Uncleaved prefusion-optimized gp140 trimers derived from analysis of HIV-1 envelope metastability
journal, June 2016
- Kong, Leopold; He, Linling; de Val, Natalia
- Nature Communications, Vol. 7, Issue 1
Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility
journal, December 2009
- Pancera, M.; Majeed, S.; Ban, Y. -E. A.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 3
Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope
journal, March 2018
- Barnes, Christopher O.; Gristick, Harry B.; Freund, Natalia T.
- Nature Communications, Vol. 9, Issue 1
RNA Containing Modified Nucleosides and Methods of Use Thereof
patent-application, February 2015
- Kariko, Katalin; Weissman, Drew
- US Patent Application 14/456302; 20150038558
Antibody Binding Is a Dominant Determinant of the Efficiency of Human Immunodeficiency Virus Type 1 Neutralization
journal, November 2006
- Yang, Xinzhen; Lipchina, Inna; Cocklin, Simon
- Journal of Virology, Vol. 80, Issue 22
Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection
journal, April 2015
- Wu, Xueling; Zhang, Zhenhai; Schramm, Chaim A.
- Cell, Vol. 161, Issue 3
Broadly Neutralizing Antibody PGT121 Allosterically Modulates CD4 Binding via Recognition of the HIV-1 gp120 V3 Base and Multiple Surrounding Glycans
journal, May 2013
- Julien, Jean-Philippe; Sok, Devin; Khayat, Reza
- PLoS Pathogens, Vol. 9, Issue 5
Optimal Combinations of Broadly Neutralizing Antibodies for Prevention and Treatment of HIV-1 Clade C Infection
journal, March 2016
- Wagh, Kshitij; Bhattacharya, Tanmoy; Williamson, Carolyn
- PLOS Pathogens, Vol. 12, Issue 3
Use of peptide tagging to detect proteins expressed from cloned genes: deletion mapping functional domains of Drosophila hsp 70.
journal, December 1984
- Munro, S.; Pelham, H. R.
- The EMBO Journal, Vol. 3, Issue 13
Conformational dynamics of single HIV-1 envelope trimers on the surface of native virions
journal, October 2014
- Munro, J. B.; Gorman, J.; Ma, X.
- Science, Vol. 346, Issue 6210
Human Immunodeficiency Virus Neutralizing Antibodies and Methods of Use Thereof
patent-application, November 2014
- Scheid, Johannes; Nussenzweig, Michael; Bjorkman, Pamela J.
- US Patent Application 14/118,496; 2014/0328862 Al
Antibody responses to envelope glycoproteins in HIV-1 infection
journal, May 2015
- Burton, Dennis R.; Mascola, John R.
- Nature Immunology, Vol. 16, Issue 6
Affinity Maturation of a Potent Family of HIV Antibodies Is Primarily Focused on Accommodating or Avoiding Glycans
journal, December 2015
- Garces, Fernando; Lee, Jeong Hyun; de Val, Natalia
- Immunity, Vol. 43, Issue 6
Sortase-mediated ligations for the site-specific modification of proteins
journal, October 2014
- Schmohl, Lena; Schwarzer, Dirk
- Current Opinion in Chemical Biology, Vol. 22
cisTEM, user-friendly software for single-particle image processing
journal, March 2018
- Grant, Timothy; Rohou, Alexis; Grigorieff, Nikolaus
- eLife, Vol. 7
Polyvalent vaccine approaches to combat HIV-1 diversity
journal, January 2017
- Korber, Bette; Hraber, Peter; Wagh, Kshitij
- Immunological Reviews, Vol. 275, Issue 1
Early development of broadly neutralizing antibodies in HIV-1–infected infants
journal, May 2014
- Goo, Leslie; Chohan, Vrasha; Nduati, Ruth
- Nature Medicine, Vol. 20, Issue 6
A systematic study of the N-glycosylation sites of HIV-1 envelope protein on infectivity and antibody-mediated neutralization
journal, February 2013
- Wang, Wenbo; Nie, Jianhui; Prochnow, Courtney
- Retrovirology, Vol. 10, Issue 1
HIV-Specific Probabilistic Models of Protein Evolution
journal, June 2007
- Nickle, David C.; Heath, Laura; Jensen, Mark A.
- PLoS ONE, Vol. 2, Issue 6
Inhibitors of HIV-1 Attachment: The Discovery and Development of Temsavir and its Prodrug Fostemsavir
journal, December 2017
- Meanwell, Nicholas A.; Krystal, Mark R.; Nowicka-Sans, Beata
- Journal of Medicinal Chemistry, Vol. 61, Issue 1
Particle-bound Human Immunodeficiency Virus Envelope Glycoproteins and Related Compositions and Methods
patent-application, March 2006
- Olson, William C.; Schulke, Norbert; Gardner, Jason
- US Patent Application 10/510268; 20060051373
Modified GP140 Envelope Polypeptides of HIV-1 Isolates, compositions, Stabilized Trimeric Coplexes, and Use Thereof
patent-application, February 2010
- Dey, Antu K.; John, Moore P.; Olson, William C.
- US Patent Application 12/312,016; 2010/0041875 Al
VMD: Visual molecular dynamics
journal, February 1996
- Humphrey, William; Dalke, Andrew; Schulten, Klaus
- Journal of Molecular Graphics, Vol. 14, Issue 1
Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains
journal, June 2014
- Fera, D.; Schmidt, A. G.; Haynes, B. F.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 28
Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody
journal, April 2016
- Bonsignori, Mattia; Zhou, Tongqing; Sheng, Zizhang
- Cell, Vol. 165, Issue 2
Two Distinct Broadly Neutralizing Antibody Specificities of Different Clonal Lineages in a Single HIV-1-Infected Donor: Implications for Vaccine Design
journal, February 2012
- Bonsignori, Mattia; Montefiori, David C.; Wu, Xueling
- Journal of Virology, Vol. 86, Issue 8
Mimicry of an HIV broadly neutralizing antibody epitope with a synthetic glycopeptide
journal, March 2017
- Alam, S. Munir; Aussedat, Baptiste; Vohra, Yusuf
- Science Translational Medicine, Vol. 9, Issue 381
B-cell–lineage immunogen design in vaccine development with HIV-1 as a case study
journal, May 2012
- Haynes, Barton F.; Kelsoe, Garnett; Harrison, Stephen C.
- Nature Biotechnology, Vol. 30, Issue 5
Sequence intrinsic somatic mutation mechanisms contribute to affinity maturation of VRC01-class HIV-1 broadly neutralizing antibodies
journal, July 2017
- Hwang, Joyce K.; Wang, Chong; Du, Zhou
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 32
Complex-type N-glycan recognition by potent broadly neutralizing HIV antibodies
journal, October 2012
- Mouquet, H.; Scharf, L.; Euler, Z.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 47
Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding
journal, July 2011
- Scheid, J. F.; Mouquet, H.; Ueberheide, B.
- Science, Vol. 333, Issue 6049
Analysis of a Clonal Lineage of HIV-1 Envelope V2/V3 Conformational Epitope-Specific Broadly Neutralizing Antibodies and Their Inferred Unmutated Common Ancestors
journal, July 2011
- Bonsignori, M.; Hwang, K. -K.; Chen, X.
- Journal of Virology, Vol. 85, Issue 19
The β20–β21 of gp120 is a regulatory switch for HIV-1 Env conformational transitions
journal, October 2017
- Herschhorn, Alon; Gu, Christopher; Moraca, Francesca
- Nature Communications, Vol. 8, Issue 1
Broad neutralization coverage of HIV by multiple highly potent antibodies
journal, September 2011
- Walker, Laura M.; Huber, Michael; Doores, Katie J.
- Nature, Vol. 477, Issue 7365
Compositions and methods for potentiated activity of biologically active molecules
patent-application, January 2010
- Jadhav, Vasant; Vargeese, Chandra; Shaw, Lucinda
- US Patent Application 12/526869; 20100015218
Peptidic Antigen that Induces Antibody Recognizing Three-Dimensional Structure of HIV and Method of Synthesizing Same
patent-application, March 2012
- Tamamura, Hirokazu; Nakahara, Toru; Nomura, Wataru
- US Patent Application 13/319,813; 2012/0052090 Al
Human cytomegalovirus RNA vaccines
patent-application, February 2018
- Ciaramella, Giuseppe; John, Shinu; Mousavi, Kambiz
- US Patent Application 15/674569; 20180028645
Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants
journal, October 2015
- Hraber, Peter; Korber, Bette; Wagh, Kshitij
- Viruses, Vol. 7, Issue 10
Atomic Resolution Cryo-EM Structure of β-Galactosidase
journal, June 2018
- Bartesaghi, Alberto; Aguerrebere, Cecilia; Falconieri, Veronica
- Structure, Vol. 26, Issue 6
Antibody Neutralization-Resistant Primary Isolates of Human Immunodeficiency Virus Type 1
journal, December 1998
- Parren, Paul W. H. I.; Wang, Meng; Trkola, Alexandra
- Journal of Virology, Vol. 72, Issue 12
Cryo-EM structure of a CD4-bound open HIV-1 envelope trimer reveals structural rearrangements of the gp120 V1V2 loop
journal, October 2016
- Wang, Haoqing; Cohen, Alexander A.; Galimidi, Rachel P.
- Proceedings of the National Academy of Sciences, Vol. 113, Issue 46
Cytomegalovirus Antigens and Uses Thereof
patent-application, December 2017
- Carfi, Andrea; Ciferri, Claudio; Ming, Yi
- US Patent Application 15/554,730; 2017/0369532 Al
Sortase-mediated protein ligation: an emerging biotechnology tool for protein modification and immobilisation
journal, September 2009
- Proft, Thomas
- Biotechnology Letters, Vol. 32, Issue 1
Comparison of biosequences
journal, December 1981
- Smith, Temple F.; Waterman, Michael S.
- Advances in Applied Mathematics, Vol. 2, Issue 4, p. 482-489
A group M consensus envelope glycoprotein induces antibodies that neutralize subsets of subtype B and C HIV-1 primary viruses
journal, September 2006
- Liao, Hua-Xin; Sutherland, Laura L.; Xia, Shi-Mao
- Virology, Vol. 353, Issue 2, p. 268-282
Microsecond Dynamics and Network Analysis of the HIV-1 SOSIP Env Trimer Reveal Collective Behavior and Conserved Microdomains of the Glycan Shield
journal, October 2017
- Lemmin, Thomas; Soto, Cinque; Stuckey, Jonathan
- Structure, Vol. 25, Issue 10
EMAN2: An extensible image processing suite for electron microscopy
journal, January 2007
- Tang, Guang; Peng, Liwei; Baldwin, Philip R.
- Journal of Structural Biology, Vol. 157, Issue 1
Vaccine Induction of Heterologous Tier 2 HIV-1 Neutralizing Antibodies in Animal Models
journal, December 2017
- Saunders, Kevin O.; Verkoczy, Laurent K.; Jiang, Chuancang
- Cell Reports, Vol. 21, Issue 13
Somatic Mutations of the Immunoglobulin Framework Are Generally Required for Broad and Potent HIV-1 Neutralization
journal, March 2013
- Klein, Florian; Diskin, Ron; Scheid, Johannes F.
- Cell, Vol. 153, Issue 1
High throughput functional analysis of HIV-1 env genes without cloning
journal, July 2007
- Kirchherr, Jennifer L.; Lu, Xiaozhi; Kasongo, Webster
- Journal of Virological Methods, Vol. 143, Issue 1
Envelope Deglycosylation Enhances Antigenicity of HIV-1 gp41 Epitopes for Both Broad Neutralizing Antibodies and Their Unmutated Ancestor Antibodies
journal, September 2011
- Ma, Ben-Jiang; Alam, S. Munir; Go, Eden P.
- PLoS Pathogens, Vol. 7, Issue 9
Partially Open HIV-1 Envelope Structures Exhibit Conformational Changes Relevant for Coreceptor Binding and Fusion
journal, October 2018
- Wang, Haoqing; Barnes, Christopher O.; Yang, Zhi
- Cell Host & Microbe, Vol. 24, Issue 4
Reconstructing a B-Cell Clonal Lineage. II. Mutation, Selection, and Affinity Maturation
journal, April 2014
- Kepler, Thomas B.; Munshaw, Supriya; Wiehe, Kevin
- Frontiers in Immunology, Vol. 5
Characterization of a monoclonal antibody to a novel glycan-dependent epitope in the V1/V2 domain of the HIV-1 envelope protein, gp120
journal, November 2014
- Doran, Rachel C.; Morales, Javier F.; To, Briana
- Molecular Immunology, Vol. 62, Issue 1
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
journal, November 2015
- Rohou, Alexis; Grigorieff, Nikolaus
- Journal of Structural Biology, Vol. 192, Issue 2
Multiple sequence alignment with hierarchical clustering
journal, November 1988
- Corpet, F.
- Nucleic Acids Research, Vol. 16, Issue 22, p. 10881-10890
Reliability of the nanopheres-DNA immunization technology to produce polyclonal antibodies directed against human neogenic proteins
journal, June 2013
- Arnaoty, Ahmed; Gouilleux-Gruart, Valérie; Casteret, Sophie
- Molecular Genetics and Genomics, Vol. 288, Issue 7-8
Nonneutralizing HIV-1 gp41 Envelope Cluster II Human Monoclonal Antibodies Show Polyreactivity for Binding to Phospholipids and Protein Autoantigens
journal, November 2010
- Dennison, S. M.; Anasti, K.; Scearce, R. M.
- Journal of Virology, Vol. 85, Issue 3
Control of Expression, Glycosylation, and Secretion of HIV-1 gp120 by Homologous and Heterologous Signal Sequences
journal, October 1994
- Li, Yan; Luo, Lizhong; Thomas, David Y.
- Virology, Vol. 204, Issue 1
Structural Evolution of Glycan Recognition by a Family of Potent HIV Antibodies
journal, September 2014
- Garces, Fernando; Sok, Devin; Kong, Leopold
- Cell, Vol. 159, Issue 1
Real-space refinement in PHENIX for cryo-EM and crystallography
journal, May 2018
- Afonine, Pavel V.; Poon, Billy K.; Read, Randy J.
- Acta Crystallographica Section D Structural Biology, Vol. 74, Issue 6
Viral membrane fusion
journal, July 2008
- Harrison, Stephen C.
- Nature Structural & Molecular Biology, Vol. 15, Issue 7
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
journal, June 2009
- Salazar-Gonzalez, Jesus F.; Salazar, Maria G.; Keele, Brandon F.
- The Journal of Experimental Medicine, Vol. 206, Issue 6
Chemical Synthesis of Highly Congested gp120 V1V2 N -Glycopeptide Antigens for Potential HIV-1-Directed Vaccines
journal, August 2013
- Aussedat, Baptiste; Vohra, Yusuf; Park, Peter K.
- Journal of the American Chemical Society, Vol. 135, Issue 35
Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike
journal, July 2017
- Ozorowski, Gabriel; Pallesen, Jesper; de Val, Natalia
- Nature, Vol. 547, Issue 7663
HIV-1 Envelope Trimer Design and Immunization Strategies To Induce Broadly Neutralizing Antibodies
journal, March 2016
- de Taeye, Steven W.; Moore, John P.; Sanders, Rogier W.
- Trends in Immunology, Vol. 37, Issue 3
bNAber: database of broadly neutralizing HIV antibodies
journal, November 2013
- Eroshkin, Alexey M.; LeBlanc, Andrew; Weekes, Dana
- Nucleic Acids Research, Vol. 42, Issue D1
HIV Transmission
journal, October 2012
- Shaw, G. M.; Hunter, E.
- Cold Spring Harbor Perspectives in Medicine, Vol. 2, Issue 11
Effects of inefficient cleavage of the signal sequence of HIV-1 gp 120 on its association with calnexin, folding, and intracellular transport.
journal, September 1996
- Li, Y.; Bergeron, J. J.; Luo, L.
- Proceedings of the National Academy of Sciences, Vol. 93, Issue 18
The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies
journal, November 2013
- Sok, Devin; Laserson, Uri; Laserson, Jonathan
- PLoS Pathogens, Vol. 9, Issue 11
Sortase-Mediated Ligation: A Gift from Gram-Positive Bacteria to Protein Engineering
journal, March 2009
- Tsukiji, Shinya; Nagamune, Teruyuki
- ChemBioChem, Vol. 10, Issue 5
RNA Containing Modified Nucleosides and Methods of Use Thereof
patent-application, November 2009
- Kariko, Katalin; Weissman, Drew
- US Patent Application 11/990,646; 2009/0286852 Al
Minimally Mutated HIV-1 Broadly Neutralizing Antibodies to Guide Reductionist Vaccine Design
journal, August 2016
- Jardine, Joseph G.; Sok, Devin; Julien, Jean-Philippe
- PLOS Pathogens, Vol. 12, Issue 8
MiniCD4 protein resistance mutations affect binding to the HIV-1 gp120 CD4 binding site and decrease entry efficiency
journal, May 2012
- Grupping, Katrijn; Selhorst, Philippe; Michiels, Johan
- Retrovirology, Vol. 9, Issue 1
Gene-Specific Substitution Profiles Describe the Types and Frequencies of Amino Acid Changes during Antibody Somatic Hypermutation
journal, May 2017
- Sheng, Zizhang; Schramm, Chaim A.; Kong, Rui
- Frontiers in Immunology, Vol. 8
Immunologic Basis for Long HCDR3s in Broadly Neutralizing Antibodies Against HIV-1
journal, June 2014
- Yu, Lei; Guan, Yongjun
- Frontiers in Immunology, Vol. 5
Evidence of efficient stop codon readthrough in four mammalian genes
journal, July 2014
- Loughran, Gary; Chou, Ming-Yuan; Ivanov, Ivaylo P.
- Nucleic Acids Research, Vol. 42, Issue 14
Interdomain Stabilization Impairs CD4 Binding and Improves Immunogenicity of the HIV-1 Envelope Trimer
journal, June 2018
- Zhang, Peng; Gorman, Jason; Geng, Hui
- Cell Host & Microbe, Vol. 23, Issue 6
DNA/NYVAC Vaccine Regimen Induces HIV-Specific CD4 and CD8 T-Cell Responses in Intestinal Mucosa
journal, October 2011
- Perreau, Matthieu; Welles, Hugh C.; Harari, Alexandre
- Journal of Virology, Vol. 85, Issue 19
Particulate Array of Well-Ordered HIV Clade C Env Trimers Elicits Neutralizing Antibodies that Display a Unique V2 Cap Approach
journal, May 2017
- Martinez-Murillo, Paola; Tran, Karen; Guenaga, Javier
- Immunity, Vol. 46, Issue 5
Immunoglobulin Somatic Hypermutation
journal, December 2007
- Teng, Grace; Papavasiliou, F. Nina
- Annual Review of Genetics, Vol. 41, Issue 1
Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors
journal, January 2013
- Kepler, Thomas B.
- F1000Research, Vol. 2
A Short Segment of the HIV-1 gp120 V1/V2 Region Is a Major Determinant of Resistance to V1/V2 Neutralizing Antibodies
journal, May 2012
- Doria-Rose, N. A.; Georgiev, I.; O'Dell, S.
- Journal of Virology, Vol. 86, Issue 15
Heterogeneity of Envelope Molecules Expressed on Primary Human Immunodeficiency Virus Type 1 Particles as Probed by the Binding of Neutralizing and Nonneutralizing Antibodies
journal, January 2003
- Poignard, P.; Moulard, M.; Golez, E.
- Journal of Virology, Vol. 77, Issue 1
MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009
- Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer
journal, September 2018
- Cao, Liwei; Pauthner, Matthias; Andrabi, Raiees
- Nature Communications, Vol. 9, Issue 1
Modifications of the Human Immunodeficiency Virus Envelope Glycoprotein Enhance Immunogenicity for Genetic Immunization
journal, June 2002
- Chakrabarti, Bimal K.; Kong, Wing-pui; Wu, Bei-yue
- Journal of Virology, Vol. 76, Issue 11
Nucleic acid vaccines
patent, January 2018
- Ciaramella, Giuseppe; Bouchon, Axel; Huang, Eric Yi-Chun
- US Patent Document 9,872,900
Identification of Common Features in Prototype Broadly Neutralizing Antibodies to HIV Envelope V2 Apex to Facilitate Vaccine Design
journal, November 2015
- Andrabi, Raiees; Voss, James E.; Liang, Chi-Hui
- Immunity, Vol. 43, Issue 5
A Native-Like SOSIP.664 Trimer Based on an HIV-1 Subtype B env Gene
journal, January 2015
- Pugach, Pavel; Ozorowski, Gabriel; Cupo, Albert
- Journal of Virology, Vol. 89, Issue 6
Structural Mechanism of Trimeric HIV-1 Envelope Glycoprotein Activation
journal, July 2012
- Tran, Erin E. H.; Borgnia, Mario J.; Kuybeda, Oleg
- PLoS Pathogens, Vol. 8, Issue 7
The Role of Antibody Polyspecificity and Lipid Reactivity in Binding of Broadly Neutralizing Anti-HIV-1 Envelope Human Monoclonal Antibodies 2F5 and 4E10 to Glycoprotein 41 Membrane Proximal Envelope Epitopes
journal, March 2007
- Alam, S. Munir; McAdams, Mildred; Boren, David
- The Journal of Immunology, Vol. 178, Issue 7
Antibody potency relates to the ability to recognize the closed, pre-fusion form of HIV Env
journal, February 2015
- Guttman, Miklos; Cupo, Albert; Julien, Jean-Philippe
- Nature Communications, Vol. 6, Issue 1
A general method applicable to the search for similarities in the amino acid sequence of two proteins
journal, March 1970
- Needleman, Saul B.; Wunsch, Christian D.
- Journal of Molecular Biology, Vol. 48, Issue 3, p. 443-453
Insights into the trimeric HIV-1 envelope glycoprotein structure
journal, February 2015
- Ward, Andrew B.; Wilson, Ian A.
- Trends in Biochemical Sciences, Vol. 40, Issue 2
Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding
journal, November 2017
- Kulp, Daniel W.; Steichen, Jon M.; Pauthner, Matthias
- Nature Communications, Vol. 8, Issue 1
Engineering HIV envelope protein to activate germline B cell receptors of broadly neutralizing anti-CD4 binding site antibodies
journal, March 2013
- McGuire, Andrew T.; Hoot, Sam; Dreyer, Anita M.
- The Journal of Experimental Medicine, Vol. 210, Issue 4
Fast and sensitive multiple sequence alignments on a microcomputer
journal, April 1989
- Higgins, Desmond G.; Sharp, Paul M.
- Bioinformatics, Vol. 5, Issue 2, p. 151-153
Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy
journal, October 2015
- Lee, Jeong Hyun; de Val, Natalia; Lyumkis, Dmitry
- Structure, Vol. 23, Issue 10
An Envelope Modification That Renders a Primary, Neutralization-Resistant Clade B Human Immunodeficiency Virus Type 1 Isolate Highly Susceptible to Neutralization by Sera from Other Clades
journal, October 1998
- Stamatatos, Leonidas; Cheng-Mayer, Cecilia
- Journal of Virology, Vol. 72, Issue 10
Improved NYVAC-Based Vaccine Vectors
journal, November 2011
- Kibler, Karen V.; Gomez, Carmen E.; Perdiguero, Beatriz
- PLoS ONE, Vol. 6, Issue 11
RNA Containing Modified Nucleosides and Methods of Use Thereof
patent-application, August 2013
- Kariko, Katalin; Weissman, Drew
- US Patent Application 13/839,023; 2013/0197068 Al
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
journal, February 2017
- Punjani, Ali; Rubinstein, John L.; Fleet, David J.
- Nature Methods, Vol. 14, Issue 3
A Next-Generation Cleaved, Soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, Expresses Multiple Epitopes for Broadly Neutralizing but Not Non-Neutralizing Antibodies
journal, September 2013
- Sanders, Rogier W.; Derking, Ronald; Cupo, Albert
- PLoS Pathogens, Vol. 9, Issue 9, Article No. e1003618
Host controls of HIV broadly neutralizing antibody development
journal, January 2017
- Kelsoe, Garnett; Haynes, Barton F.
- Immunological Reviews, Vol. 275, Issue 1
The HIV-1 envelope glycoprotein structure: nailing down a moving target
journal, January 2017
- Ward, Andrew B.; Wilson, Ian A.
- Immunological Reviews, Vol. 275, Issue 1
High-Density Array of Well-Ordered HIV-1 Spikes on Synthetic Liposomal Nanoparticles Efficiently Activate B Cells
journal, May 2016
- Ingale, Jidnyasa; Stano, Armando; Guenaga, Javier
- Cell Reports, Vol. 15, Issue 9
A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic β-Hairpin Structure
journal, April 2017
- Lee, Jeong Hyun; Andrabi, Raiees; Su, Ching-Yao
- Immunity, Vol. 46, Issue 4
Synthesis of Biologically Active Peptide Nucleic Acid−Peptide Conjugates by Sortase-Mediated Ligation
journal, May 2007
- Pritz, Stephan; Wolf, Yvonne; Kraetke, Oliver
- The Journal of Organic Chemistry, Vol. 72, Issue 10
UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004
- Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C.
- Journal of Computational Chemistry, Vol. 25, Issue 13
HIV-1 neutralizing antibodies: understanding nature's pathways
journal, June 2013
- Mascola, John R.; Haynes, Barton F.
- Immunological Reviews, Vol. 254, Issue 1
Elicitation of Neutralizing Antibodies Targeting the V2 Apex of the HIV Envelope Trimer in a Wild-Type Animal Model
journal, October 2017
- Voss, James E.; Andrabi, Raiees; McCoy, Laura E.
- Cell Reports, Vol. 21, Issue 1