Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis

Mullet, John

doi:10.5061/dryad.rbnzs7hhn

Title: Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis

Dataset
Other Related Research

Abstract

Data from: Sorghum bicolor TX08001 nodal root tissue development gene expression profiling

Authors:

Mullet, John

GLBRC - Texas A&M University

Publication Date:: Mon Jul 31 04:00:00 UTC 2023

DOE Contract Number:: SC0018409

Research Org.:: Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Subject:: bioenergy sorghum; development; gene regulatory network; nodal root buds; transcriptome

OSTI Identifier:: 3003607

DOI:: https://doi.org/10.5061/dryad.rbnzs7hhn

Citation Formats


                    Mullet, John. Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis.  United States: N. p., 2023. 
        Web.  doi:10.5061/dryad.rbnzs7hhn.

Copy to clipboard


                    Mullet, John. Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis.  United States.  doi:https://doi.org/10.5061/dryad.rbnzs7hhn

Copy to clipboard


                    Mullet, John. 2023.  
"Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis".  United States.  doi:https://doi.org/10.5061/dryad.rbnzs7hhn.  https://www.osti.gov/servlets/purl/3003607. Pub date:Mon Jul 31 04:00:00 UTC 2023

Copy to clipboard


                    
@article{osti_3003607,

  title        = {Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis},

  author       = {Mullet, John},

  abstractNote = {Data from: Sorghum bicolor TX08001 nodal root tissue development gene expression profiling},

  doi          = {10.5061/dryad.rbnzs7hhn},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Mon Jul 31 04:00:00 UTC 2023},

  month        = {Mon Jul 31 04:00:00 UTC 2023}

}

Copy to clipboard

Dataset:

View Dataset

DOI: https://doi.org/10.5061/dryad.rbnzs7hhn

Save / Share:

Export Metadata

Save to My Library

Similar records in DOE Data Explorer and OSTI.GOV collections:

Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis

Dataset Mullet, John

Sorghum bicolor TX08001 Nodal Root Tissue Development Gene Expression Profiling
Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis

Journal Article Lamb, Austin ; Kurtz, Evan ; Glenn, Priscilla ; ... - Frontiers in Plant Science

Bioenergy sorghum’s large and deep nodal root system and associated microbiome enables uptake of water and nutrients from and deposition of soil organic carbon into soil profiles, key contributors to the crop’s resilience and sustainability. The goal of this study was to increase our understanding of bioenergy sorghum nodal root bud development. Sorghum nodal root bud initiation was first observed on the stem node of the 7^th phytomer below the shoot apex. Buds were initiated near the upper end of the stem node pulvinus on the side of the stem opposite the tiller bud, then additional buds were added overmore »« less
Sorghum bicolor TX08001 Nodal Root Bud Development Gene Expression Profiling

Dataset Møller, Birger Lindberg ; Mullet, John E.

Genome-transcriptome
Sorghum bicolor TX08001 Nodal root development Gene Expression Profiling

Dataset Møller, Birger Lindberg ; Mullet, John E.

Genome-transcriptome
The stem cell-type transcriptome of bioenergy sorghum reveals the spatial regulation of secondary cell wall networks

Dataset Mullet, John

Stems accumulate high levels of sucrose that could be used to synthesize bioethanol and useful biopolymers if information about stem cell-type gene expression and regulation was available to enable engineering. To obtain this information, Laser Capture Microdissection (LCM) was used to isolate and collect transcriptome profiles from five major cell types that are present in stems of the sweet sorghum Wray. Transcriptome analysis identified genes with cell-type specific and cell-preferred expression patterns that reflect the distinct metabolic, transport, and regulatory functions of each cell type.

Similar Records