Laboratory time series moisture manipulative experiment from sediment across the contiguous US: time series aerobic respiration and geochemistry

Laan, Maggi; Delgado, Dillman; Forbes, Brieanne; Garayburu-Caruso, Vanessa A.; Goldman, Amy E.; Gonzalez, Brianna I.; Kaufman, Matthew H.; McKever, Sophia A.; Norris, Cooper; Ocejo, Juan Alberto; Powers-McCormack, Beck; Renteria, Lupita; Rod, Kenton A.; Scheibe, Timothy D.; Tfaily, Malak M.; Stegen, James C.; WHONDRS Consortium, The

doi:10.15485/2428003

Title: Laboratory time series moisture manipulative experiment from sediment across the contiguous US: time series aerobic respiration and geochemistry

Dataset
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Abstract

This dataset supports a broader study examining the effects of wetting and drying on hyporheic zone respiration across the contiguous United States (CONUS). The dataset provides data generated from a laboratory moisture manipulation experiment. The contents include time series aerobic respiration and moisture; dissolved oxygen; sediment geochemistry data; and field metadata (including qualitative information on instream and river corridor characteristics). Samples were collected as part of the WHONDRS CONUS-Scale Model-Sample Study (CM). This study was designed following ICON (integrated, coordinated, open, and networked) principles to facilitate a model-experiment (ModEx) iteration approach, leveraging crowdsourced sampling across the CONUS. The data package associated with the CM study is available at This dataset is comprised of one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) readme; (5) field protocol; and a (6) a subfolder with sediment sample data from the incubation experiment. The sample data subfolder contains (1) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC); (2) total nitrogen (TN); (3) adenosine triphosphate (ATP); (4) percent carbon and nitrogen; (5) effect size; (6) iron (II); (7) gravimetric moisture; (8) respiration rates and raw dissolved oxygen values; (9) specific conductance; (10) pH; (11) temperature; (12) amore »« less

Authors:

;

; Gonzalez, Brianna I.;

; McKever, Sophia A.;

;

; WHONDRS Consortium, The

Pacific Northwest National Laboratory
University of Arizona
University of Arizona/Pacific Northwest National Laboratory

Publication Date:: Thu Aug 01 00:00:00 UTC 2024

DOE Contract Number:: AC02-05CH11231

Research Org.:: Early Career Research Program: Watershed Perturbation-Response Traits Derived Through Ecological Theory - Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS)

Sponsoring Org.:: ESS-DIVE; U.S. DOE > Office of Science > Biological and Environmental Research (BER)

Subject:: 54 ENVIRONMENTAL SCIENCES; Aerobic respiration rate; Biogeochemistry; Canopy cover; Catchment; DO; DOC; Dissolved organic carbon; EARTH SCIENCE > BIOSPHERE > VEGETATION > MACROPHYTES; EARTH SCIENCE > BIOSPHERE > VEGETATION > VEGETATION COVER; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > GASES > DISSOLVED OXYGEN; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > NUTRIENTS > NITROGEN; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > NUTRIENTS > NITROGEN COMPOUNDS; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > CONDUCTIVITY; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > NITROGEN COMPOUNDS; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > ORGANIC MATTER; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > WATER TEMPERATURE; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > pH; ESS-DIVE CSV File Formatting Guidelines Reporting Format; ESS-DIVE File Level Metadata Reporting Format; ESS-DIVE Sample ID and Metadata Reporting Format; ESS-DIVE Water-Soil-Sediment Chemistry Reporting Format; Effect size; FTICR-MS; Fourier transform ion cyclotron resonance mass spectrometry; Freshwater; Gravimetric moisture; Hydraulic exchange; Hydrobiogeochemical function; Hydrology; Hyporheic zone; ICON; IRES; Intermittent; Intermittent Rivers and Ephemeral Streams; Iron (II); Macrophyte cover; Manipulative laboratory experiment; Moisture; NPOC; Non-perennial; Non-purgeable organic carbon; Percent total carbon; Percent total nitrogen; River; River corridor; Sediment; Specific conductance; Stream; TN; Temperature; Total nitrogen; VIE; Variably inundated Ecosystem; Vegetation; Watershed; Wetting and drying

OSTI Identifier:: 2428003

DOI:: https://doi.org/10.15485/2428003

Citation Formats


                    Laan, Maggi, Delgado, Dillman, Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Gonzalez, Brianna I., Kaufman, Matthew H., McKever, Sophia A., Norris, Cooper, Ocejo, Juan Alberto, Powers-McCormack, Beck, Renteria, Lupita, Rod, Kenton A., Scheibe, Timothy D., Tfaily, Malak M., Stegen, James C., and WHONDRS Consortium, The. Laboratory time series moisture manipulative experiment from sediment across the contiguous US: time series aerobic respiration and geochemistry.  United States: N. p., 2024. 
        Web.  doi:10.15485/2428003.

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                    Laan, Maggi, Delgado, Dillman, Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Gonzalez, Brianna I., Kaufman, Matthew H., McKever, Sophia A., Norris, Cooper, Ocejo, Juan Alberto, Powers-McCormack, Beck, Renteria, Lupita, Rod, Kenton A., Scheibe, Timothy D., Tfaily, Malak M., Stegen, James C., & WHONDRS Consortium, The. Laboratory time series moisture manipulative experiment from sediment across the contiguous US: time series aerobic respiration and geochemistry.  United States.  doi:https://doi.org/10.15485/2428003

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                    Laan, Maggi, Delgado, Dillman, Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Gonzalez, Brianna I., Kaufman, Matthew H., McKever, Sophia A., Norris, Cooper, Ocejo, Juan Alberto, Powers-McCormack, Beck, Renteria, Lupita, Rod, Kenton A., Scheibe, Timothy D., Tfaily, Malak M., Stegen, James C., and WHONDRS Consortium, The. 2024.  
"Laboratory time series moisture manipulative experiment from sediment across the contiguous US: time series aerobic respiration and geochemistry".  United States.  doi:https://doi.org/10.15485/2428003.  https://www.osti.gov/servlets/purl/2428003. Pub date:Thu Aug 01 00:00:00 UTC 2024

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@article{osti_2428003,

  title        = {Laboratory time series moisture manipulative experiment from sediment across the contiguous US: time series aerobic respiration and geochemistry},

  author       = {Laan, Maggi and Delgado, Dillman and Forbes, Brieanne and Garayburu-Caruso, Vanessa A. and Goldman, Amy E. and Gonzalez, Brianna I. and Kaufman, Matthew H. and McKever, Sophia A. and Norris, Cooper and Ocejo, Juan Alberto and Powers-McCormack, Beck and Renteria, Lupita and Rod, Kenton A. and Scheibe, Timothy D. and Tfaily, Malak M. and Stegen, James C. and WHONDRS Consortium, The},

  abstractNote = {This dataset supports a broader study examining the effects of wetting and drying on hyporheic zone respiration across the contiguous United States (CONUS). The dataset provides data generated from a laboratory moisture manipulation experiment. The contents include time series aerobic respiration and moisture; dissolved oxygen; sediment geochemistry data; and field metadata (including qualitative information on instream and river corridor characteristics). Samples were collected as part of the WHONDRS CONUS-Scale Model-Sample Study (CM). This study was designed following ICON (integrated, coordinated, open, and networked) principles to facilitate a model-experiment (ModEx) iteration approach, leveraging crowdsourced sampling across the CONUS. The data package associated with the CM study is available at This dataset is comprised of one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) readme; (5) field protocol; and a (6) a subfolder with sediment sample data from the incubation experiment. The sample data subfolder contains (1) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC); (2) total nitrogen (TN); (3) adenosine triphosphate (ATP); (4) percent carbon and nitrogen; (5) effect size; (6) iron (II); (7) gravimetric moisture; (8) respiration rates and raw dissolved oxygen values; (9) specific conductance; (10) pH; (11) temperature; (12) a summary containing median values of each data type for each treatment (wet and dry); (13) methods codes; (14) Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) methods; and (15) a subfolder of 9 Tesla FTICR-MS. This folder contains two subfolders, one containing the .xml data files and the other containing instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All files are .csv, .pdf, .R, .ref, or .xml. CORRECTION: Carbon and nitrogen content are reported as percentages. The current column headers "01395_C_percent_per_mg" and "01397_N_percent_per_mg" are incorrect. These should read "01395_C_percent" and "01397_N_percent" and will be corrected in the next version of this data package.},

  doi          = {10.15485/2428003},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Thu Aug 01 00:00:00 UTC 2024},

  month        = {Thu Aug 01 00:00:00 UTC 2024}

}

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DOI: https://doi.org/10.15485/2428003

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