U.S. Department of EnergyOffice of Scientific and Technical Information
Files and scripts to support manuscript Needham et al. Canopy Gradients of Respiration
Abstract
This dataset includes the parameter files, relevant output files, and scripts to perform analysis with Jupyter notebooks that support the manuscript Needham et al 2025 “Canopy Gradients of Respiration Drive Plant Carbon Budgets and Leaf Area Index.” We add functionality to the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) to allow flexible vertical gradients of leaf maintenance respiration (Rdark) and maximum carboxylation rate (Vcmax) through the canopy. We test the sensitivity of FATES to canopy gradients in Rdark, both in global simulations to assess broad scale impacts on leaf area index (LAI) and vegetation carbon, and in single site simulations where we assess impacts on plant functional type (PFT) competitive dynamics. Parameter files are netcdf files that can be converted to human readable .cdl files using NCO tools. Analysis scripts are Jupyter notebook files. These can be opened and run using the open source Jupyter notebook software. Model outputs are netcdf files.
- Authors:
-
- Lawrence Berkeley National Laboratory; Lawrence Berkeley National Lab
- Publication Date:
- Other Number(s):
- NGT0215
- DOE Contract Number:
- AC02-05CH11231
- Research Org.:
- Next-Generation Ecosystem Experiments Tropics; Lawrence Berkeley National Laboratory
- Sponsoring Org.:
- U.S. DOE > Office of Science > Biological and Environmental Research (BER)
- Subject:
- 54 ENVIRONMENTAL SCIENCES
- OSTI Identifier:
- 2425967
- DOI:
- https://doi.org/10.15486/ngt/2425967
Citation Formats
Needham, Jessica. Files and scripts to support manuscript Needham et al. Canopy Gradients of Respiration. United States: N. p., 2024.
Web. doi:10.15486/ngt/2425967.
Needham, Jessica. Files and scripts to support manuscript Needham et al. Canopy Gradients of Respiration. United States. doi:https://doi.org/10.15486/ngt/2425967
Needham, Jessica. 2024.
"Files and scripts to support manuscript Needham et al. Canopy Gradients of Respiration". United States. doi:https://doi.org/10.15486/ngt/2425967. https://www.osti.gov/servlets/purl/2425967. Pub date:Tue Dec 31 23:00:00 EST 2024
@article{osti_2425967,
title = {Files and scripts to support manuscript Needham et al. Canopy Gradients of Respiration},
author = {Needham, Jessica},
abstractNote = {This dataset includes the parameter files, relevant output files, and scripts to perform analysis with Jupyter notebooks that support the manuscript Needham et al 2025 “Canopy Gradients of Respiration Drive Plant Carbon Budgets and Leaf Area Index.” We add functionality to the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) to allow flexible vertical gradients of leaf maintenance respiration (Rdark) and maximum carboxylation rate (Vcmax) through the canopy. We test the sensitivity of FATES to canopy gradients in Rdark, both in global simulations to assess broad scale impacts on leaf area index (LAI) and vegetation carbon, and in single site simulations where we assess impacts on plant functional type (PFT) competitive dynamics. Parameter files are netcdf files that can be converted to human readable .cdl files using NCO tools. Analysis scripts are Jupyter notebook files. These can be opened and run using the open source Jupyter notebook software. Model outputs are netcdf files.},
doi = {10.15486/ngt/2425967},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Tue Dec 31 23:00:00 EST 2024},
month = {Tue Dec 31 23:00:00 EST 2024}
}