Data and Scripts Associated with the Manuscript “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids”

Laan, Maggi; Fulton, Stephanie G.; Barnes, Morgan; Borton, Mikayla A.; Chen, Xingyuan; Farris, Yuliya; Forbes, Brieanne; Garayburu-Caruso, Vanessa A.; Goldman, Amy E.; Grieger, Samantha; Hall, Robert O.; Kaufman, Matthew H.; Lin, Xinming; McCann, Erin; McKever, Sophia A.; Myers-Pigg, Allison; Otenburg, Opal; Pelly, Aaron; Ren, Huiying; Renteria, Lupita; Scheibe, Timothy D.; Son, Kyongho; Tagestad, Jerry D.; Torgeson, Joshua M.; Stegen, James C.

doi:10.15485/2283171

Title: Data and Scripts Associated with the Manuscript “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids”

Dataset
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Abstract

This data package is associated with the publication “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids” submitted to EGU Biogeochemistry (Laan et al. 2025). In this research, water column respiration (ERwc) data, surface water chemistry data, organic matter (OM) chemistry data, and publicly available geospatial data were used in analysis to evaluate the variability in ERwc at 47 sites across the Yakima River basin in Washington, USA.In addition to this readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes all column/row headers and variable definitions.The data package includes the data inputs, and outputs, and R scripts to reproduce all the analyses performed in the manuscript and create manuscript figures. The data package is comprised of three main folders (Code, Data, and Figures). The Code folder is comprised of four scripts and three analysis-specific subfolders that contain the R scripts to perform the analyses described in the publication and create publication figures. The Data folder is comprised of two “.csv” files and four subfolders that contain data input and output files. The Published_Data folder contains a readme that directs themore »« less

Authors:

;

; Farris, Yuliya;

;

; Grieger, Samantha;

;

; McCann, Erin; McKever, Sophia A.;

; Otenburg, Opal;

;

Pacific Northwest National Laboratory
Colorado State University
Flathead Lake Biological Station, University of Montana

Publication Date:: Tue Jan 16 23:00:00 EST 2024

DOE Contract Number:: AC02-05CH11231

Research Org.:: River Corridor Hydro-biogeochemistry from Molecular to Multi-Basin Scales SFA

Sponsoring Org.:: U.S. DOE > Office of Science > Biological and Environmental Research (BER)

Subject:: 54 ENVIRONMENTAL SCIENCES; Biogeochemistry; CRB; Columbia River Basin; DIC; DOC; Dissolved inorganic carbon; Dissolved organic carbon; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > SOLIDS > SUSPENDED SOLIDS; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > NITROGEN COMPOUNDS; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > ORGANIC MATTER; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > WATER TEMPERATURE; ESS-DIVE CSV File Formatting Guidelines Reporting Format; ESS-DIVE File Level Metadata Reporting Format; FTICR-MS; Freshwater; Hydrobiogeochemical function; Modified Strahler stream order; NPOC; Non-purgeable organic carbon; OM; Organic matter; Reach-scale ecosystem respiration; Reach-scale ecosystem respiration rate; River; River corridor; Spatial Study; Stream; Stream metabolism; TDN; TSS; Total dissolved nitrogen; Total suspended solids; Upstream drainage area; Water column respiration; Water column respiration rate; Watershed; YRB; Yakima River Basin

OSTI Identifier:: 2283171

DOI:: https://doi.org/10.15485/2283171

Citation Formats


                    Laan, Maggi, Fulton, Stephanie G., Barnes, Morgan, Borton, Mikayla A., Chen, Xingyuan, Farris, Yuliya, Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Grieger, Samantha, Hall, Robert O., Kaufman, Matthew H., Lin, Xinming, McCann, Erin, McKever, Sophia A., Myers-Pigg, Allison, Otenburg, Opal, Pelly, Aaron, Ren, Huiying, Renteria, Lupita, Scheibe, Timothy D., Son, Kyongho, Tagestad, Jerry D., Torgeson, Joshua M., and Stegen, James C. Data and Scripts Associated with the Manuscript “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids”.  United States: N. p., 2024. 
        Web.  doi:10.15485/2283171.

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                    Laan, Maggi, Fulton, Stephanie G., Barnes, Morgan, Borton, Mikayla A., Chen, Xingyuan, Farris, Yuliya, Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Grieger, Samantha, Hall, Robert O., Kaufman, Matthew H., Lin, Xinming, McCann, Erin, McKever, Sophia A., Myers-Pigg, Allison, Otenburg, Opal, Pelly, Aaron, Ren, Huiying, Renteria, Lupita, Scheibe, Timothy D., Son, Kyongho, Tagestad, Jerry D., Torgeson, Joshua M., & Stegen, James C. Data and Scripts Associated with the Manuscript “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids”.  United States.  doi:https://doi.org/10.15485/2283171

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                    Laan, Maggi, Fulton, Stephanie G., Barnes, Morgan, Borton, Mikayla A., Chen, Xingyuan, Farris, Yuliya, Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Grieger, Samantha, Hall, Robert O., Kaufman, Matthew H., Lin, Xinming, McCann, Erin, McKever, Sophia A., Myers-Pigg, Allison, Otenburg, Opal, Pelly, Aaron, Ren, Huiying, Renteria, Lupita, Scheibe, Timothy D., Son, Kyongho, Tagestad, Jerry D., Torgeson, Joshua M., and Stegen, James C. 2024.  
"Data and Scripts Associated with the Manuscript “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids”".  United States.  doi:https://doi.org/10.15485/2283171.  https://www.osti.gov/servlets/purl/2283171. Pub date:Tue Jan 16 23:00:00 EST 2024

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@article{osti_2283171,

  title        = {Data and Scripts Associated with the Manuscript “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids”},

  author       = {Laan, Maggi and Fulton, Stephanie G. and Barnes, Morgan and Borton, Mikayla A. and Chen, Xingyuan and Farris, Yuliya and Forbes, Brieanne and Garayburu-Caruso, Vanessa A. and Goldman, Amy E. and Grieger, Samantha and Hall, Robert O. and Kaufman, Matthew H. and Lin, Xinming and McCann, Erin and McKever, Sophia A. and Myers-Pigg, Allison and Otenburg, Opal and Pelly, Aaron and Ren, Huiying and Renteria, Lupita and Scheibe, Timothy D. and Son, Kyongho and Tagestad, Jerry D. and Torgeson, Joshua M. and Stegen, James C.},

  abstractNote = {This data package is associated with the publication “Water Column Respiration in the Yakima River Basin is Explained by Temperature, Nutrients and Suspended Solids” submitted to EGU Biogeochemistry (Laan et al. 2025). In this research, water column respiration (ERwc) data, surface water chemistry data, organic matter (OM) chemistry data, and publicly available geospatial data were used in analysis to evaluate the variability in ERwc at 47 sites across the Yakima River basin in Washington, USA.In addition to this readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes all column/row headers and variable definitions.The data package includes the data inputs, and outputs, and R scripts to reproduce all the analyses performed in the manuscript and create manuscript figures. The data package is comprised of three main folders (Code, Data, and Figures). The Code folder is comprised of four scripts and three analysis-specific subfolders that contain the R scripts to perform the analyses described in the publication and create publication figures. The Data folder is comprised of two “.csv” files and four subfolders that contain data input and output files. The Published_Data folder contains a readme that directs the user to download the appropriate files and add to this folder when using scripts. The Figures folder includes figures from the manuscript in “.pdf” and “.png” formats and a folder with intermediate figure files. This data package is associated with a GitHub repository which can be found at https://github.com/river-corridors-sfa/rcsfa-RC2-SPS-ERwc.},

  doi          = {10.15485/2283171},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Jan 16 23:00:00 EST 2024},

  month        = {Tue Jan 16 23:00:00 EST 2024}

}

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DOI: https://doi.org/10.15485/2283171

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