KBase Narrative - Metabolically diverse Miscanthus x giganteus microbiome isolates with tremendous growth-promoting potential - Copy

Schirmer, Aaron; Whitham, Jason

doi:10.25982/175568.4/2329277

Title: KBase Narrative - Metabolically diverse Miscanthus x giganteus microbiome isolates with tremendous growth-promoting potential - Copy

Dataset
Other Related Research

Abstract

This module analyzes the impact of fertilizer on the soil microbiome and attempts to identify isolates that could be used to make green fertilizers.

Authors:

; Whitham, Jason

Northeastern Illinois University; Oak Ridge National Laboratory
North Carolina State University

Publication Date:: Thu Mar 28 00:00:00 EDT 2024

Research Org.:: U.S. Department of Energy Systems Biology Knowledgebase

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI Identifier:: 2329277

DOI:: https://doi.org/10.25982/175568.4/2329277

Citation Formats


                    Schirmer, Aaron, and Whitham, Jason. KBase Narrative - Metabolically diverse Miscanthus x giganteus microbiome isolates with tremendous growth-promoting potential - Copy.  United States: N. p., 2024. 
        Web.  doi:10.25982/175568.4/2329277.

Copy to clipboard


                    Schirmer, Aaron, & Whitham, Jason. KBase Narrative - Metabolically diverse Miscanthus x giganteus microbiome isolates with tremendous growth-promoting potential - Copy.  United States.  doi:https://doi.org/10.25982/175568.4/2329277

Copy to clipboard


                    Schirmer, Aaron, and Whitham, Jason. 2024.  
"KBase Narrative - Metabolically diverse Miscanthus x giganteus microbiome isolates with tremendous growth-promoting potential - Copy".  United States.  doi:https://doi.org/10.25982/175568.4/2329277.  https://www.osti.gov/servlets/purl/2329277. Pub date:Thu Mar 28 00:00:00 EDT 2024

Copy to clipboard


                    
@article{osti_2329277,

  title        = {KBase Narrative - Metabolically diverse Miscanthus x giganteus microbiome isolates with tremendous growth-promoting potential - Copy},

  author       = {Schirmer, Aaron and Whitham, Jason},

  abstractNote = {This module analyzes the impact of fertilizer on the soil microbiome and attempts to identify isolates that could be used to make green fertilizers.},

  doi          = {10.25982/175568.4/2329277},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Thu Mar 28 00:00:00 EDT 2024},

  month        = {Thu Mar 28 00:00:00 EDT 2024}

}

Copy to clipboard

Dataset:

View Dataset

DOI: https://doi.org/10.25982/175568.4/2329277

Save / Share:

Export Metadata

Save to My Library

Similar records in DOE Data Explorer and OSTI.GOV collections:

A Genomic Catalogue of Earth’s Microbiomes - Introductory KBase Narrative

Dataset Nayfach, Stephen ; Roux, Simon ; Seshadri, Rekha ; ...

The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has enabled unprecedented insights into the ecology and evolution of environmental and host-associated microbiomes. Here we applied this powerful approach to over 10,000 metagenomes collected from diverse habitats covering all of Earth’s continents and oceans, human- and animal-host associated microbiomes, engineered environments, and natural and agricultural soils to capture extant microbial metabolic and functional potential. We present a comprehensive catalogue of 52,515 metagenome-assembled genomes representing 12,556 novel candidate species-level operational taxonomic units (OTUs), spanning 135 phyla, which expand the known phylogenetic diversity of Bacteria and Archaea by 44%. We alsomore »« less
KBase Narrative - Mse_Genome_Assembly

Dataset Rastegar, Kiarash

Upon investigating the gut microbiome of mice for microbes related to Polycystic Ovary Syndrome (PCOS), our team found 2 metagenomes that could not be classified using alignment based methods. To further investigate microbial species from these samples, we used common MAGs workflow to create draft genomes which were then later taxonomically classified using GTDB-tk app.
KBase Narrative - natrialba

Dataset Rodge, Seema

The genome sequence revealed PHB synthase gene in Natrialba swarupiae. The genome-scale metabolic model was built based on the ModelSEED pipeline using the Build Metabolic Model App in KBase.
KBase Narrative - Metabolic_reconstruction_ETDI_mangrove

Dataset Laux, Marcele ; Ciapina, Luciane Prioli ; Carvalho, Fabiola Marques ; ...

Mangroves are complex and dynamic coastal ecosystems under frequent fluctuations in physicochemical conditions related to the tidal regime. The frequent variation in organic matter concentration, nutrients, and oxygen availability, among other factors, drives the microbial community composition, favoring syntrophic populations harboring a rich and diverse, stress-driven metabolism. Mangroves are known for their carbon sequestration capability, and their complex and integrated metabolic activity is essential to global biogeochemical cycling. Here, we present a metabolic reconstruction based on the genomic functional capability and flux profile between sympatric MAGs co-assembled from a tropical restored mangrove.
KBase Narrative - BIT 295 MRA Isolate 106- Final

Dataset Chadha, Aditya ; Goller, Carlos ; Sjogren, Carly ; ...

Arthrobactor is a bacteria that commonly resides in soil, plants, and wastewater (Gobbetti 2014). It is commonly used in the agricultural industry for degrading pesticides which will detox the soil and allow wildlife not to be harmed by said pesticides. The sample that is being tested came from an acid drain from a mine. The test sample was able to live and thrive in a metal ridden environment which could lead it to having some genes that could aid in e-waste recycling. A species of arthrobacter known as Arthrobacter citreus can be used for polyamide waste (Baxi 2019). Polyamide ismore »« less

Similar Records