Automatic Tool for Local Assembly Structures
Whole community shotgun sequencing of total DNA (i.e. metagenomics) and total RNA (i.e. metatranscriptomics) has provided a wealth of information in the microbial community structure, predicted functions, metabolic networks, and is even able to reconstruct complete genomes directly. Here we present ATLAS (Automatic Tool for Local Assembly Structures) a comprehensive pipeline for assembly, annotation, genomic binning of metagenomic and metatranscriptomic data with an integrated framework for Multi-Omics. This will provide an open source tool for the Multi-Omic community at large.
- Short Name / Acronym:
- ATLAS
- Site Accession Number:
- 7187
- Software Type:
- Scientific
- License(s):
- BSD 3-clause "New" or "Revised" License
- Research Organization:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Organization:
- USDOEPrimary Award/Contract Number:AC05-76RL01830
- DOE Contract Number:
- AC05-76RL01830
- Code ID:
- 4735
- OSTI ID:
- code-4735
- Country of Origin:
- United States
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Automatic Tool for Local Assembly Structures
ATLAS (Automatic Tool for Local Assembly Structures) - A Comprehensive Infrastructure for Assembly, Annotation, and Genomic Binning of Metagenomic and Metaranscripomic Data
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
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Tue Oct 11 00:00:00 EDT 2016
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ATLAS (Automatic Tool for Local Assembly Structures) - A Comprehensive Infrastructure for Assembly, Annotation, and Genomic Binning of Metagenomic and Metaranscripomic Data
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Wed Mar 01 23:00:00 EST 2017
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Sun Jun 21 20:00:00 EDT 2020
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