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Automatic Tool for Local Assembly Structures

RESOURCE

Publicly Accessible Repository
https://github.com/pnnl/atlas
https://doi.org/10.11578/dc.20171025.1849

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Abstract

Whole community shotgun sequencing of total DNA (i.e. metagenomics) and total RNA (i.e. metatranscriptomics) has provided a wealth of information in the microbial community structure, predicted functions, metabolic networks, and is even able to reconstruct complete genomes directly. Here we present ATLAS (Automatic Tool for Local Assembly Structures) a comprehensive pipeline for assembly, annotation, genomic binning of metagenomic and metatranscriptomic data with an integrated framework for Multi-Omics. This will provide an open source tool for the Multi-Omic community at large.
Release Date:
2016-10-10
Project Type:
Open Source, Publicly Available Repository
Software Type:
Scientific
Licenses:
BSD 3-clause "New" or "Revised" License
Sponsoring Org.:
Code ID:
4735
Site Accession Number:
7187
Research Org.:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Country of Origin:
United States

RESOURCE

Publicly Accessible Repository
https://github.com/pnnl/atlas
https://doi.org/10.11578/dc.20171025.1849

SAVE / SHARE



PNNL Badge

Citation Formats

Automatic Tool for Local Assembly Structures. Computer Software. https://github.com/pnnl/atlas. USDOE. 10 Oct. 2016. Web. doi:10.11578/dc.20171025.1849.
(2016, October 10). Automatic Tool for Local Assembly Structures. [Computer software]. https://github.com/pnnl/atlas. https://doi.org/10.11578/dc.20171025.1849.
"Automatic Tool for Local Assembly Structures." Computer software. October 10, 2016. https://github.com/pnnl/atlas. https://doi.org/10.11578/dc.20171025.1849.
@misc{ doecode_4735,
title = {Automatic Tool for Local Assembly Structures},
author = ,
abstractNote = {Whole community shotgun sequencing of total DNA (i.e. metagenomics) and total RNA (i.e. metatranscriptomics) has provided a wealth of information in the microbial community structure, predicted functions, metabolic networks, and is even able to reconstruct complete genomes directly. Here we present ATLAS (Automatic Tool for Local Assembly Structures) a comprehensive pipeline for assembly, annotation, genomic binning of metagenomic and metatranscriptomic data with an integrated framework for Multi-Omics. This will provide an open source tool for the Multi-Omic community at large.},
doi = {10.11578/dc.20171025.1849},
url = {https://doi.org/10.11578/dc.20171025.1849},
howpublished = {[Computer Software] \url{https://doi.org/10.11578/dc.20171025.1849}},
year = {2016},
month = {oct}
}