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A Domain indEpendent sequence alignment strategy for gPu archiTectures (ADEPT) v1.0

Software · Thu Nov 14 00:00:00 EST 2019

DOI:https://doi.org/10.11578/dc.20191223.1· OSTI ID:code-33325 · Code ID:33325

Yelick, Katherine A ^[1]; Oliker, Leonid ^[1]; Awan, Muaaz Gul ^[1]

Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

GPU-BSW is a version of Smith-Waterman alignment algorithm which has been optimized to perform large number of sequence alignments on GPUs.

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Short Name / Acronym:: GPU accelerated Smith-Waterman for performing batch alignments

Site Accession Number:: 2020-006

Software Type:: Scientific

License(s):: BSD 3-clause "New" or "Revised" License

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE

Primary Award/Contract Number:

AC02-05CH11231

DOE Contract Number:: AC02-05CH11231

Code ID:: 33325

OSTI ID:: code-33325

Country of Origin:: United States

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