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A Domain indEpendent sequence alignment strategy for gPu archiTectures (ADEPT) v1.0

RESOURCE

Publicly Accessible Repository
https://github.com/m-gul/GPU-BSW
https://doi.org/10.11578/dc.20191223.1

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Abstract

GPU-BSW is a version of Smith-Waterman alignment algorithm which has been optimized to perform large number of sequence alignments on GPUs.
Developers:
Yelick, Katherine [1] ;  Oliker, Leonid [1] ;  Awan, Muaaz Gul [1]
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Release Date:
2019-11-14
Project Type:
Open Source, Publicly Available Repository
Software Type:
Scientific
Licenses:
BSD 3-clause "New" or "Revised" License
Sponsoring Org.:
Code ID:
33325
Site Accession Number:
2020-006
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Country of Origin:
United States

RESOURCE

Publicly Accessible Repository
https://github.com/m-gul/GPU-BSW
https://doi.org/10.11578/dc.20191223.1

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Citation Formats

Yelick, Katherine A., Oliker, Leonid, and Awan, Muaaz Gul. A Domain indEpendent sequence alignment strategy for gPu archiTectures (ADEPT) v1.0. Computer Software. https://github.com/m-gul/GPU-BSW. USDOE. 14 Nov. 2019. Web. doi:10.11578/dc.20191223.1.
Yelick, Katherine A., Oliker, Leonid, & Awan, Muaaz Gul. (2019, November 14). A Domain indEpendent sequence alignment strategy for gPu archiTectures (ADEPT) v1.0. [Computer software]. https://github.com/m-gul/GPU-BSW. https://doi.org/10.11578/dc.20191223.1.
Yelick, Katherine A., Oliker, Leonid, and Awan, Muaaz Gul. "A Domain indEpendent sequence alignment strategy for gPu archiTectures (ADEPT) v1.0." Computer software. November 14, 2019. https://github.com/m-gul/GPU-BSW. https://doi.org/10.11578/dc.20191223.1.
@misc{ doecode_33325,
title = {A Domain indEpendent sequence alignment strategy for gPu archiTectures (ADEPT) v1.0},
author = {Yelick, Katherine A. and Oliker, Leonid and Awan, Muaaz Gul},
abstractNote = {GPU-BSW is a version of Smith-Waterman alignment algorithm which has been optimized to perform large number of sequence alignments on GPUs.},
doi = {10.11578/dc.20191223.1},
url = {https://doi.org/10.11578/dc.20191223.1},
howpublished = {[Computer Software] \url{https://doi.org/10.11578/dc.20191223.1}},
year = {2019},
month = {nov}
}