Virtual and solution conformations of oligosaccharides

Journal Article · Tue Oct 20 04:00:00 EDT 1987 · Biochemistry; (United States)

DOI:https://doi.org/10.1021/bi00395a016· OSTI ID:5513092

Cumming, D A; Carver, J P

The possibility that observed nuclear Overhauser enhancements and bulk longitudinal relaxation times, parameters measured by /sup 1/H NMR and often employed in determining the preferred solution conformation of biologically important molecules, are the result of averaging over many conformational states is quantitatively evaluated. Of particular interest was to ascertain whether certain /sup 1/H NMR determined conformations are virtual in nature; i.e., the fraction of the population of molecules actually found at any time within the subset of conformational space defined as the solution conformation is vanishingly small. A statistical mechanics approach was utilized to calculate an ensemble average relaxation matrix from which (NOE)'s and (T/sub 1/)'s are calculated. Model glycosidic linkages in four oligosaccharides were studied. The nature of the resultant population distributions is such that 50% of the molecular population is found within 1% of available microstates, while 99% of the molecular population occupies about 10% of the ensemble microstates, a number roughly equal to that sterically allowed. From this analysis the authors conclude that in many cases quantitative interpretation of NMR relaxation data, which attempts to define a single set of allowable torsion angle values consistent with the observed data, will lead to solution conformations that are either virtual or reflect torsion angle values possessed by a minority of the molecular population. Observed values of NMR relaxation data are the result of the complex interdependence of the population distribution and NOE (or T/sub 1/) surfaces in conformational space. In conformational analyses, NMR data can therefore be used to test different population distributions calculated from empirical potential energy functions.

• Research Organization: Univ. of Toronto, Ontario
• OSTI ID: 5513092
• Journal Information: Biochemistry; (United States), Journal Name: Biochemistry; (United States) Vol. 26:21; ISSN BICHA
• Country of Publication: United States
• Language: English

Related Subjects

550601* -- Medicine-- Unsealed Radionuclides in Diagnostics
62 RADIOLOGY AND NUCLEAR MEDICINE
BARYONS
CARBOHYDRATES
CONFORMATIONAL CHANGES
ELEMENTARY PARTICLES
FERMIONS
HADRONS
MAGNETIC RESONANCE
MATHEMATICS
NUCLEAR MAGNETIC RESONANCE
NUCLEONS
OLIGOSACCHARIDES
ORGANIC COMPOUNDS
OVERHAUSER EFFECT
PROTONS
RELAXATION
RESONANCE
SACCHARIDES
STATISTICS