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UDP-glucuronic acid decarboxylase in alfalfa: a target to improve ruminal digestibility of stems

Journal Article · · Journal of Experimental Botany
DOI:https://doi.org/10.1093/jxb/eraf541· OSTI ID:3013907
 [1];  [2];  [3];  [4];  [3]
  1. US Dept. of Agriculture (USDA), Madison, WI (United States). Agricultural Research Service (ARS); Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN (United States)
  2. Univ. of Wisconsin, Madison, WI (United States); Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)
  3. US Dept. of Agriculture (USDA), Madison, WI (United States). Agricultural Research Service (ARS)
  4. Univ. of Wisconsin, Madison, WI (United States)
Alfalfa (Medicago sativa) has a high nutritional value, but poor digestibility of the stems limits its value as an energy source in ruminant diets. Xylan and lignin negatively affect cell wall digestibility, whereas pectins have high digestibility in the rumen. In plants, UDP-xylose synthase (UXS) catalyses the decarboxylation of UDP-glucuronic acid to form UDP-xylose in an irreversible step that is key for xylan synthesis. Here, we functionally characterized two UXS genes in alfalfa, namely MsaUXS2 and MsaUXS4, and investigated their impact on ruminal digestibility. Both genes are more highly expressed in stems than leaves, and the enzymes have UDP-glucuronic acid decarboxylase activity in vitro. Silencing of MsaUXS2 and MsaUXS4 via RNAi altered plant growth and resulted in a 40% decrease in xylose, a 115% increase in arabinose, and a 60% increase in galacturonic acid in the polysaccharide matrix as well as a 20% decrease in lignin in the cell wall. Together, our results show a major role for UXS2 and UXS4 in xylan synthesis and secondary cell wall deposition in alfalfa. Additionally, in vitro rumen digestibility assays for the silenced lines had on average 30% increased gas production at 24 h, demonstrating the potential of targeting UXS genes to increase stem digestibility.
Research Organization:
Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
SC0014664; SC0018409
OSTI ID:
3013907
Journal Information:
Journal of Experimental Botany, Journal Name: Journal of Experimental Botany; ISSN 1460-2431; ISSN 0022-0957
Publisher:
Oxford University Press - Society for Experimental BiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (89)

Degradation characteristics of isolated andin situ cell wall lucerne pectic polysaccharides by mixed ruminal microbes journal October 1995
Genetic dissection of cell wall defects and the strigolactone pathway in Arabidopsis journal June 2019
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method journal December 2001
A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome journal December 1992
Isolation and expression in transgenic tobacco and rice plants, of the cassava vein mosaic virus (CVMV) promoter journal September 1996
A segmented gas/liquid delivery system for continuous culture of microorganisms on insoluble substrates and its use for growth of Ruminococcus flavefaciens on cellulose journal November 1991
In vitro gas production as a surrogate measure of the fermentability of cellulosic biomass to ethanol journal December 2004
Grass lignin acylation: p-coumaroyl transferase activity and cell wall characteristics of C3 and C4 grasses journal March 2009
Characterisation and expression of the pathway from UDP-glucose to UDP-xylose in differentiating tobacco tissue journal January 2005
Improving Saccharification Efficiency of Alfalfa Stems Through Modification of the Terminal Stages of Monolignol Biosynthesis journal September 2008
NMR Characterization of C3H and HCT Down-Regulated Alfalfa Lignin journal October 2009
The Synergic Relationship Between Xylan Removal and Enhanced Cellulose Digestibility for Bioethanol Production: Reactive Area, Crystallinity, and Inhibitation journal June 2015
Agronomic Performance and Lignin Content of HCT Down-Regulated Alfalfa (Medicago sativa L.) journal May 2018
Molecular Cloning of Three UDP-Glucuronate Decarboxylase Genes That Are Preferentially Expressed In Gossypium Fibers From Elongation to Secondary Cell Wall Synthesis journal August 2010
Characterization of soluble and putative membrane-bound UDP-glucuronic acid decarboxylase (OsUXS) isoforms in rice journal November 2004
Biomass composition of two new energy cane cultivars compared with their ancestral Saccharum spontaneum during internode development journal October 2020
Role of UDP-Glucuronic Acid Decarboxylase in Xylan Biosynthesis in Arabidopsis journal August 2016
Vascular-tissue-specific expression of an endo-1,4-β-xylanase enhances forage efficacy of sweet sorghum silage journal August 2025
Biochemical control of xylan biosynthesis — which end is up? journal June 2008
Reassessment of effects on lignification and vascular development in the irx4 Arabidopsis mutant journal September 2005
Modification of hemicellulose content by antisense down-regulation of UDP-glucuronate decarboxylase in tobacco and its consequences for cellulose extractability journal November 2007
Modifying crops to increase cell wall digestibility journal April 2012
Characterization and Elimination of Undesirable Protein Residues in Plant Cell Wall Materials for Enhancing Lignin Analysis by Solution-State Nuclear Magnetic Resonance Spectroscopy journal November 2017
Mechanistic Roles of Tyrosine 149 and Serine 124 in UDP-galactose 4-Epimerase from Escherichia coli journal September 1997
Response of Thermochemical and Biochemical Conversion Processes to Lignin Concentration in Alfalfa Stems journal June 2008
Carbohydrate composition of alfalfa cell walls isolated from stem sections differing in maturity journal March 1992
Comparison of the Acetyl Bromide Spectrophotometric Method with Other Analytical Lignin Methods for Determining Lignin Concentration in Forage Samples journal June 2004
Using the Acetyl Bromide Assay To Determine Lignin Concentrations in Herbaceous Plants:  Some Cautionary Notes journal February 1999
Lignin modification improves fermentable sugar yields for biofuel production journal June 2007
NIH Image to ImageJ: 25 years of image analysis journal June 2012
Orchestrating high-throughput genomic analysis with Bioconductor journal January 2015
Whole plant cell wall characterization using solution-state 2D NMR journal August 2012
An even pattern of xylan substitution is critical for interaction with cellulose in plant cell walls journal October 2017
Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d6/pyridine-d5 journal January 2010
A gel-state 2D-NMR method for plant cell wall profiling and analysis: a model study with the amorphous cellulose and xylan from ball-milled cotton linters journal January 2014
The hemicelluloses of lucerne journal January 1966
Construct design for efficient, effective and high-throughput gene silencing in plants: Construct design for gene silencing journal September 2001
Effects of Coumarate 3-Hydroxylase Down-regulation on Lignin Structure journal January 2006
Depletion of UDP-d-apiose/UDP-d-xylose Synthases Results in Rhamnogalacturonan-II Deficiency, Cell Wall Thickening, and Cell Death in Higher Plants journal March 2006
Advances in basic biology of alfalfa (Medicago sativa L.): a comprehensive overview journal March 2025
FRAGILE CULM 18 encodes a UDP-glucuronic acid decarboxylase required for xylan biosynthesis and plant growth in rice journal February 2022
Three UDP-xylose transporters participate in xylan biosynthesis by conveying cytosolic UDP-xylose into the Golgi lumen in Arabidopsis journal December 2017
SMS: Smart Model Selection in PhyML journal May 2017
Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases journal August 2019
Binary vectors which allow the exchange of plant selectable markers and reporter genes journal January 1990
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool journal April 2024
MUSCLE: multiple sequence alignment with high accuracy and high throughput journal March 2004
Phytozome: a comparative platform for green plant genomics journal November 2011
NGPhylogeny.fr: new generation phylogenetic services for non-specialists journal April 2019
Purification and cDNA Cloning of UDP-d-Glucuronate Carboxy-lyase (UDP-d-xylose Synthase) from Pea Seedlings journal November 2002
The irregular xylem9 Mutant is Deficient in Xylan Xylosyltransferase Activity journal September 2007
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 journal March 2010
Effects of supplementation of nonforage fiber source in diets with different starch levels on growth performance, rumen fermentation, nutrient digestion, and microbial flora of Hu lambs journal April 2021
Biosynthesis of UDP-Xylose. Cloning and Characterization of a Novel Arabidopsis Gene Family, UXS , Encoding Soluble and Putative Membrane-Bound UDP-Glucuronic Acid Decarboxylase Isoforms journal December 2002
Characterization and Expression Patterns of UDP-d-Glucuronate Decarboxylase Genes in Barley   journal May 2005
Lignin Formation in Plants. The Dilemma of Linkage Specificity journal August 2001
Vessel-Specific Reintroduction of CINNAMOYL-COA REDUCTASE1 (CCR1) in Dwarfed ccr1 Mutants Restores Vessel and Xylary Fiber Integrity and Increases Biomass journal November 2017
The Arabidopsis irregular xylem8 Mutant Is Deficient in Glucuronoxylan and Homogalacturonan, Which Are Essential for Secondary Cell Wall Integrity journal January 2007
Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis journal December 2007
GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato journal November 2009
Fibre‐specific regulation of lignin biosynthesis improves biomass quality in Populus journal January 2020
Engineering secondary cell wall deposition in plants journal November 2012
UDP‐Api/UDP‐Xyl synthases affect plant development by controlling the content of UDP‐Api to regulate the RG‐II‐borate complex journal July 2020
Artificial microRNA (amiRNA) induced gene silencing in alfalfa (Medicago sativa) journal February 2013
Plant Nucleotide Sugar Formation, Interconversion, and Salvage by Sugar Recycling* journal June 2011
Hemicelluloses journal June 2010
RHAMNOGALACTURONAN II: Structure and Function of a Borate Cross-Linked Cell Wall Pectic Polysaccharide journal June 2004
qRAT: an R-based stand-alone application for relative expression analysis of RT-qPCR data journal July 2022
The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies journal July 2015
Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants journal July 2016
A screening method to identify efficient sgRNAs in Arabidopsis, used in conjunction with cell-specific lignin reduction journal May 2019
A gene-editing/complementation strategy for tissue-specific lignin reduction while preserving biomass yield journal September 2021
The UDP-Glucuronate Decarboxylase Gene Family in Populus: Structure, Expression, and Association Genetics journal April 2013
Alfalfa Cellulose Synthase Gene Expression under Abiotic Stress: A Hitchhiker’s Guide to RT-qPCR Normalization journal August 2014
Three Methods for the Introduction of Foreign DNA into Agrobacterium book June 2006
Expression of UDP–Glucose Dehydrogenase Reduces Cell-Wall Polysaccharide Concentration and Increases Xylose Content in Alfalfa Stems journal January 2004
Welcome to the Tidyverse journal November 2019
Structural Polysaccharides in Forages and Their Degradability journal January 1989
Leaf and Stem Properties of Alfalfa Entries journal July 2000
Nitrogen Fixation of Alfalfa in the Seeding Year 1 journal March 1981
Alfalfa Leaf Protein and Stem Cell Wall Polysaccharide Yields under Hay and Biomass Management Systems journal July 2007
A Comparative Study of Alfalfa and Medicago truncatula Stem Traits: Morphology, Chemical Composition, and Ruminal Digestibility journal July 2007
Ruminal digestion and glycosyl linkage patterns of cell wall components from leaf and stem fractions of alfalfa, orchardgrass, and wheat straw journal May 1994
Characteristics of plant cell walls affecting intake and digestibility of forages by ruminants. journal January 1995
A review of xylan and lignin biosynthesis: Foundation for studying Arabidopsis irregular xylem mutants with pleiotropic phenotypes journal February 2014
Evaluation of lower-starch diets for lactating Holstein dairy cows journal November 2014
Initial pH as a Determinant of Cellulose Digestion Rate by Mixed Ruminal Microorganisms In Vitro journal April 2001
Cell wall composition throughout development for the model grass Brachypodium distachyon journal January 2012
Overexpression of a Sugarcane BAHD Acyltransferase Alters Hydroxycinnamate Content in Maize Cell Wall journal April 2021

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