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Fermented Foods Microbial Genomes Database

Dataset ·
 [1]
  1. Microcosm Foods
+ Show Author Affiliations
This database contains ~4,300 microbial genomes assembled from diverse fermented foods. These genomes were obtained from a larger set of 13,850 microbial genomes by clustering them at 99% average nucleotide identity (ANI) to create a "species"-representative database.
Research Organization:
U.S. Department of Energy Systems Biology Knowledgebase (KBASE); Microcosm Foods
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
DOE Contract Number:
AC02-05CH11231; AC02-06CH11357; AC02-98CH10886; AC05-00OR22725
OSTI ID:
2569606
Country of Publication:
United States
Language:
English

References (2)

MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics preprint March 2024
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome dataset August 2024

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
fermented foods
genomes
microbes