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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/mra.00179-25· OSTI ID:2567470
 [1];  [1];  [1];  [1]
  1. University of Wisconsin-Madison, WI (United States)
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To advance the knowledge of microbial communities capable of fermenting agro-industrial residues into value-added products, we report metagenomes of microbial communities from four anaerobic bioreactors fed a mixture of ultra-filtered milk permeate and cottage cheese acid whey. This analysis produced 42 unique metagenome-assembled genomes (MAGs) that represent distinct taxa.
Research Organization:
Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)
Sponsoring Organization:
National Dairy Council; USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; SC0018409
OSTI ID:
2567470
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 6 Vol. 14; ISSN 2576-098X
Publisher:
SSPA - American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (8)

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication journal July 2017
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea journal August 2017
High-quality metagenome assembly from long accurate reads with metaMDBG journal January 2024
Minimap2: pairwise alignment for nucleotide sequences journal May 2018
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database journal November 2019
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
Fast and accurate de novo genome assembly from long uncorrected reads journal January 2017
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies journal January 2019

Figures / Tables (1)

TABLE 1(p. 2)table TABLE 1

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
dairy residues
lactic acid
metagenomics
microbial communities