Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Seasonal Controls on Microbial Depolymerization and Oxidation of Organic Matter in Floodplain Soils

Journal Article · · Environmental Science and Technology
Floodplain soils are vast reservoirs of organic carbon often attributed to anaerobic conditions that impose metabolic constraints on organic matter degradation. What remains elusive is how such metabolic constraints respond to dynamic flooding and drainage cycles characteristic of floodplain soils. Here, in this work, we show that microbial depolymerization and respiration of organic compounds, two rate-limiting steps in decomposition, vary spatially and temporally with seasonal flooding of mountainous floodplain soils (Gothic, Colorado, USA). Combining metabolomics and -proteomics, we found a lower abundance of oxidative enzymes during flooding coincided with the accumulation of aromatic, high-molecular weight compounds, particularly in surface soils. In subsurface soils, we found that a lower oxidation state of carbon coincided with a greater abundance of chemically reduced, energetically less favorable low-molecular weight metabolites, irrespective of flooding condition. Our results suggest that seasonal flooding temporarily constrains oxidative depolymerization of larger, potentially plant-derived compounds in surface soils; in contrast, energetic constraints on microbial respiration persist in more reducing subsurface soils regardless of flooding. Our work underscores that the potential vulnerability of these distinct anaerobic carbon storage mechanisms to changing flooding dynamics should be considered, particularly as climate change shifts both the frequency and extent of flooding in floodplains globally.
Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; AC05-76RL01830; SC0016544
OSTI ID:
2560688
Report Number(s):
PNNL-SA--201526
Journal Information:
Environmental Science and Technology, Journal Name: Environmental Science and Technology Journal Issue: 38 Vol. 58; ISSN 0013-936X
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
English

References (50)

Snowmelt controls on concentration-discharge relationships and the balance of oxidative and acid-base weathering fluxes in an alpine catchment, East River, Colorado: ACID-BASE VERSUS OXIDATIVE WEATHERING FLUXES journal March 2017
Banking carbon: a review of organic carbon storage and physical factors influencing retention in floodplains and riparian ecosystems: BANKING CARBON journal December 2015
KEGG Mapper for inferring cellular functions from protein sequences journal August 2019
Saccharolytic activity and its role as a limiting step in methane formation during the anaerobic degradation of rice straw in rice paddy soil journal February 2002
Are oxygen limitations under recognized regulators of organic carbon turnover in upland soils? journal January 2016
Development of energetic and enzymatic limitations on microbial carbon cycling in soils journal March 2021
Organic carbon compounds associated with deep soil carbon stores journal August 2022
Sedimentary organic matter preservation: an assessment and speculative synthesis journal April 1995
Anaerobic Metabolism: Linkages to Trace Gases and Aerobic Processes book January 2003
Fenton chemistry and reactive oxygen species in soil: Abiotic mechanisms of biotic processes, controls and consequences for carbon and nutrient cycling journal March 2021
Temporal dynamics of CO2 and CH4 loss potentials in response to rapid hydrological shifts in tidal freshwater wetland soils journal April 2018
Degradation of natural organic matter: A thermodynamic analysis journal April 2011
Elevated [CO2] changes soil organic matter composition and substrate diversity in an arid ecosystem journal November 2018
Phenol oxidase, peroxidase and organic matter dynamics of soil journal March 2010
Soil burial contributes to deep soil organic carbon storage journal February 2014
Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains journal April 2017
Reactive iron, not fungal community, drives organic carbon oxidation potential in floodplain soils journal March 2023
Advanced Solvent Based Methods for Molecular Characterization of Soil Organic Matter by High-Resolution Mass Spectrometry journal April 2015
Formularity: Software for Automated Formula Assignment of Natural and Other Organic Matter from Ultrahigh-Resolution Mass Spectra journal November 2017
Enzymes, Manganese, or Iron? Drivers of Oxidative Organic Matter Decomposition in Soils journal October 2020
Soil Organic Matter Characterization by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR MS): A Critical Review of Sample Preparation, Analysis, and Data Interpretation journal July 2021
Molecular Nature of Mineral-Organic Associations within Redox-Active Mountainous Floodplain Sediments journal August 2023
Significant Floodplain Soil Organic Carbon Storage Along a Large High‐Latitude River and its Tributaries journal February 2019
Geochemical Exports to River From the Intrameander Hyporheic Zone Under Transient Hydrologic Conditions: East River Mountainous Watershed, Colorado journal October 2018
Shale as a Source of Organic Carbon in Floodplain Sediments of a Mountainous Watershed journal February 2020
Future Changes in Snowpack, Snowmelt, and Runoff Potential Extremes Over North America journal November 2021
Sulfur Biogeochemical Cycling and Redox Dynamics in a Shale‐Dominated Mountainous Watershed journal June 2022
An enzymic 'latch' on a global carbon store journal January 2001
Persistence of soil organic matter as an ecosystem property journal October 2011
Response of snow-dependent hydrologic extremes to continued global warming journal November 2012
Large near-term projected snowpack loss over the western United States journal April 2017
Thermodynamically controlled preservation of organic carbon in floodplains journal May 2017
Anaerobic microsites have an unaccounted role in soil carbon stabilization journal November 2017
Iron-mediated organic matter decomposition in humid soils can counteract protection journal May 2020
Beaver dams overshadow climate extremes in controlling riparian hydrology and water quality journal November 2022
Predicted microbial secretomes and their target substrates in marine sediment journal October 2017
Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms journal May 2019
Deep carbon storage potential of buried floodplain soils journal August 2017
Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment journal June 2021
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights journal May 2021
Iron oxidation stimulates organic matter decomposition in humid tropical forest soils journal July 2013
Trade‐offs in soil carbon protection mechanisms under aerobic and anaerobic conditions journal April 2020
Syntrophic Oxidation of Propionate in Rice Field Soil at 15 and 30°C under Methanogenic Conditions journal May 2012
Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile journal January 2008
MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses journal May 2016
Increasing the power of interpretation for soil metaproteomics data journal September 2021
Breaking the enzymatic latch: impacts of reducing conditions on hydrolytic enzyme activity in tropical forest soils journal October 2014
The East River, Colorado, Watershed: A Mountainous Community Testbed for Improving Predictive Understanding of Multiscale Hydrological–Biogeochemical Dynamics journal January 2018
Shifting mineral and redox controls on carbon cycling in seasonally flooded mineral soils journal January 2019
Geomorphic regulation of floodplain soil organic carbon concentration in watersheds of the Rocky and Cascade Mountains, USA journal January 2018

Similar Records

Thermodynamically controlled preservation of organic carbon in floodplains
Journal Article · Thu Jun 01 00:00:00 EDT 2017 · Nature Geoscience · OSTI ID:1773369

Thermodynamically controlled preservation of organic carbon in floodplains
Journal Article · Sun Apr 30 20:00:00 EDT 2017 · Nature Geoscience · OSTI ID:1363868