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Shadow energy functionals and potentials in Born–Oppenheimer molecular dynamics

Journal Article · · Journal of Chemical Physics
DOI:https://doi.org/10.1063/5.0146431· OSTI ID:2520149

In Born–Oppenheimer molecular dynamics (BOMD) simulations based on the density functional theory (DFT), the potential energy and the interatomic forces are calculated from an electronic ground state density that is determined by an iterative self-consistent field optimization procedure, which, in practice, never is fully converged. The calculated energies and forces are, therefore, only approximate, which may lead to an unphysical energy drift and instabilities. Here, we discuss an alternative shadow BOMD approach that is based on backward error analysis. Instead of calculating approximate solutions for an underlying exact regular Born–Oppenheimer potential, we do the opposite. Instead, we calculate the exact electron density, energies, and forces, but for an underlying approximate shadow Born–Oppenheimer potential energy surface. In this way, the calculated forces are conservative with respect to the approximate shadow potential and generate accurate molecular trajectories with long-term energy stabilities. We show how such shadow Born–Oppenheimer potentials can be constructed at different levels of accuracy as a function of the integration time step, δt, from the constrained minimization of a sequence of systematically improvable, but approximate, shadow energy density functionals. For each energy functional, there is a corresponding ground state Born–Oppenheimer potential. These pairs of shadow energy functionals and potentials are higher-level generalizations of the original “zeroth-level” shadow energy functionals and potentials used in extended Lagrangian BOMD. The proposed shadow energy functionals and potentials are useful only within this extended dynamical framework, where also the electronic degrees of freedom are propagated as dynamical field variables together with the atomic positions and velocities. The theory is quite general and can be applied to MD simulations using approximate DFT, Hartree–Fock, or semi-empirical methods, as well as to coarse-grained flexible charge models.

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE National Nuclear Security Administration (NNSA)
Grant/Contract Number:
89233218CNA000001
OSTI ID:
2520149
Alternate ID(s):
OSTI ID: 1970645
Report Number(s):
LA-UR--22-29595
Journal Information:
Journal of Chemical Physics, Journal Name: Journal of Chemical Physics Journal Issue: 15 Vol. 158; ISSN 0021-9606
Publisher:
American Institute of Physics (AIP)Copyright Statement
Country of Publication:
United States
Language:
English

References (81)

A Self-Consistent Charge Density-Functional Based Tight-Binding Method for Predictive Materials Simulations in Physics, Chemistry and Biology journal January 2000
Zur Quantentheorie der Molekeln journal January 1927
Extended tight‐binding quantum chemistry methods journal August 2020
Car-Parrinello molecular dynamics: Car-Parrinello molecular dynamics journal September 2011
Frontiers and Challenges in Warm Dense Matter book January 2014
A semiempirical model for the two-center repulsion integrals in the NDDO approximation journal January 1977
Wechselwirkung neutraler Atome und hom�opolare Bindung nach der Quantenmechanik journal June 1927
Optimization of parameters for semiempirical methods VI: more modifications to the NDDO approximations and re-optimization of parameters journal November 2012
Stability of the thermal Hartree-Fock approximation journal January 1963
N-particle dynamics of polarizable Stockmayer-type molecules journal August 1977
Construction of higher order symplectic integrators journal November 1990
Density-functional tight-binding for beginners journal November 2009
Fock matrix dynamics journal March 2004
Convergence of stochastic-extended Lagrangian molecular dynamics method for polarizable force field simulation journal August 2021
Graphics Processing Unit-Accelerated Semiempirical Born Oppenheimer Molecular Dynamics Using PyTorch journal July 2020
NEXMD Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations journal July 2020
Density-Matrix Based Extended Lagrangian Born–Oppenheimer Molecular Dynamics journal May 2020
Semi-Empirical Shadow Molecular Dynamics: A PyTorch Implementation journal May 2023
Extended Lagrangian Density Functional Tight-Binding Molecular Dynamics for Molecules and Solids journal June 2015
Numerical Optimization of Density Functional Tight Binding Models: Application to Molecules Containing Carbon, Hydrogen, Nitrogen, and Oxygen journal November 2017
Efficient and Accurate Born–Oppenheimer Molecular Dynamics for Large Molecular Systems journal October 2017
GFN2-xTB—An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions journal January 2019
Semiempirical Quantum-Chemical Methods with Orthogonalization and Dispersion Corrections journal January 2019
DFTB3: Extension of the Self-Consistent-Charge Density-Functional Tight-Binding Method (SCC-DFTB) journal March 2011
Stable and Efficient Linear Scaling First-Principles Molecular Dynamics for 10000+ Atoms journal November 2014
Charge equilibration for molecular dynamics simulations journal April 1991
Electronegativity-equalization method for the calculation of atomic charges in molecules journal July 1986
Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model journal June 1985
Accelerated, energy-conserving Born–Oppenheimer molecular dynamics via Fock matrix extrapolation journal January 2005
Visible light enhanced gas sensing of CdSe nanoribbons of ethanol journal January 2014
Inertial extended-Lagrangian scheme for solving charge equilibration models journal January 2019
Classical polarizable force fields parametrized from ab initio calculations journal July 2002
Modeling induced polarization with classical Drude oscillators: Theory and molecular dynamics simulation algorithm journal August 2003
Time-reversible ab initio molecular dynamics journal April 2007
Extended Lagrangian Born–Oppenheimer molecular dynamics with dissipation journal June 2009
Higher-order symplectic integration in Born–Oppenheimer molecular dynamics journal December 2009
Lagrangian formulation with dissipation of Born-Oppenheimer molecular dynamics using the density-functional tight-binding method journal July 2011
Geometric integration in Born-Oppenheimer molecular dynamics journal December 2011
A polarizable model for water using distributed charge sites journal December 1988
A chemical potential equalization method for molecular simulations journal January 1996
Energy conservation in molecular dynamics simulations of classical systems journal June 2012
Energy conserving, linear scaling Born-Oppenheimer molecular dynamics journal October 2012
ACKS2: Atom-condensed Kohn-Sham DFT approximated to second order journal February 2013
First principles molecular dynamics without self-consistent field optimization journal January 2014
Generalized extended Lagrangian Born-Oppenheimer molecular dynamics journal October 2014
Analytic hyperpolarizability and polarizability derivative with fractional occupation numbers for large extended systems journal February 2017
Polarizable charge equilibration model for predicting accurate electrostatic interactions in molecules and solids journal March 2017
Next generation extended Lagrangian first principles molecular dynamics journal August 2017
Shadow Hamiltonian in classical NVE molecular dynamics simulations: A path to long time stability journal January 2020
DFTB+, a software package for efficient approximate density functional theory based atomistic simulations journal March 2020
Extended Lagrangian Born–Oppenheimer molecular dynamics using a Krylov subspace approximation journal March 2020
Extended Lagrangian Born–Oppenheimer molecular dynamics for orbital-free density-functional theory and polarizable charge equilibration models journal February 2021
Shadow Hamiltonian in classical NVE molecular dynamics simulations involving Coulomb interactions journal May 2021
Graph-based quantum response theory and shadow Born–Oppenheimer molecular dynamics journal February 2023
Molecular dynamics without effective potentials via the Car-Parrinello approach journal August 1990
Improved cutoff functions for short-range potentials and the Wolf summation journal July 2022
Ab initio molecular dynamics: basic concepts, current trends and novel applications journal December 2002
Accelerating self-consistent field iterations in Kohn-Sham density functional theory using a low-rank approximation of the dielectric matrix journal March 2023
Hartree-Fock Theory with Nonorthogonal Basis Functions journal June 1959
Inhomogeneous Electron Gas journal November 1964
Thermal Properties of the Inhomogeneous Electron Gas journal March 1965
Self-Consistent Equations Including Exchange and Correlation Effects journal November 1965
Forces in Molecules journal August 1939
Simplified method for calculating the energy of weakly interacting fragments journal February 1985
Tight-binding models and density-functional theory journal June 1989
Construction of tight-binding-like potentials on the basis of density-functional theory: Application to carbon journal May 1995
Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties journal September 1998
Wave function extended Lagrangian Born-Oppenheimer molecular dynamics journal August 2010
Hamiltonians for discrete dynamics journal September 1994
Shadow mass and the relationship between velocity and momentum in symplectic numerical integration journal April 2000
Canonical density matrix perturbation theory journal December 2015
Extended Born-Oppenheimer Molecular Dynamics journal March 2008
Exact Conditions in Finite-Temperature Density-Functional Theory journal October 2011
Unified Approach for Molecular Dynamics and Density-Functional Theory journal November 1985
Shadowing of physical trajectories in chaotic dynamics: Containment and refinement journal September 1990
Crystal Structures of Zirconia from First Principles and Self-Consistent Tight Binding journal December 1998
Time-Reversible Born-Oppenheimer Molecular Dynamics journal September 2006
Efficient and Accurate Car-Parrinello-like Approach to Born-Oppenheimer Molecular Dynamics journal February 2007
New Developments in Molecular Orbital Theory journal April 1951
Extended Lagrangian Born–Oppenheimer molecular dynamics: from density functional theory to charge relaxation models journal August 2021
Shadow Lagrangian dynamics for superfluidity journal January 2021

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