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Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/mra.00801-24· OSTI ID:2449665
 [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];
  1. Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
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ABSTRACT

Luteolibacter sp. strain Populi is a bacterium from the phylum Verrucomicrobiota, isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa , from the Cascade mountains in Washington. Its 6.6-Mb chromosome was completely sequenced using Oxford Nanopore long-read sequencing and is predicted to encode 5,301 proteins and 60 RNAs.

Sponsoring Organization:
USDOE
OSTI ID:
2449665
Alternate ID(s):
OSTI ID: 2477516
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements; ISSN 2576-098X
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (18)

Microbes inside—from diversity to function: the case of Akkermansia journal March 2012
KBase: The United States Department of Energy Systems Biology Knowledgebase journal July 2018
Niche differentiation is spatially and temporally regulated in the rhizosphere journal January 2020
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries journal November 2018
Assembly of long, error-prone reads using repeat graphs journal April 2019
Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants journal May 2020
Time- and memory-efficient genome assembly with Raven journal May 2021
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences journal March 2016
NCBI prokaryotic genome annotation pipeline journal June 2016
Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes journal February 2012
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis journal July 2016
Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere journal July 2020
Cultivating the Bacterial Microbiota of Populus Roots journal June 2021
Trycycler: consensus long-read assemblies for bacterial genomes journal September 2021
Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method journal January 2017
The Rhizosphere Selects for Particular Groups of Acidobacteria and Verrucomicrobia journal December 2013
Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem journal December 2018
Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils journal July 2015

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