Luteolibacter sp. strain Populi

Name: Luteolibacter sp. strain Populi
Published: Fri Jul 19 04:00:00 EDT 2024

Allen, Benjamin; Podar, Mircea

doi:10.25982/185119.92/2404572

Luteolibacter sp. strain Populi

Dataset · Fri Jul 19 04:00:00 EDT 2024

DOI:https://doi.org/10.25982/185119.92/2404572· OSTI ID:2404572

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Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); DOE Systems Biology Knowledgebase
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Luteolibacter sp. strain Populi is bacterium from the phylum Verrucomicrobiota, isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa, from the Cascade mountains in Washington. Its 6.6 Mb chromosome was completely sequenced using Oxford Nanopore long-reads and is predicted to encode 5301 proteins and 60 RNAs. The bacteria was isolated from the rhizosphere of a mature Populus trichocarpa from the Tieton riverwatershed of Washington state, USA (Lat: 46°42’9” N, Lon: 120°25 39’36” W). A rhizosphere sample (fine roots and adhering soil) was used to obtain a microbial fraction by centrifugation on Histodenz (12) and stained with 5µM Syto59 (Thermo Fisher Scientific Inc). A Cytopeia Influx cell sorter (BD, Franklin Lakes, NJ) was used to sort and array single cells (100 per plate) based on forward-side scatter and fluorescence intensity on asparagine-glucose nutrient agar (ATCC medium 184). The Luteolibacter sp. Populi genome sequence has been deposited in GenBank under the accession number CP161812. A draft genome annotated with Prokka and DRAM is available in this Narrative as Luteolibacter_sp_Prokka.240711.

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Research Organization:: U.S. Department of Energy Systems Biology Knowledgebase

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

DOE Contract Number:: AC05-00OR22725

OSTI ID:: 2404572

Country of Publication:: United States

Language:: English

References (20)

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