Emerging multiscale insights on microbial carbon use efficiency in the land carbon cycle

He, Xianjin; Abs, Elsa; Allison, Steven D.; Tao, Feng; Huang, Yuanyuan; Manzoni, Stefano; Abramoff, Rose; Bruni, Elisa; Bowring, Simon P. K.; Chakrawal, Arjun; Ciais, Philippe; Elsgaard, Lars; Friedlingstein, Pierre; Georgiou, Katerina; Hugelius, Gustaf; Holm, Lasse Busk; Li, Wei; Luo, Yiqi; Marmasse, Gaëlle; Nunan, Naoise; Qiu, Chunjing; Sitch, Stephen; Wang, Ying-Ping; Goll, Daniel S.

doi:10.1038/s41467-024-52160-5

Emerging multiscale insights on microbial carbon use efficiency in the land carbon cycle

Journal Article · Fri Sep 13 00:00:00 EDT 2024 · Nature Communications

DOI:https://doi.org/10.1038/s41467-024-52160-5· OSTI ID:2447682

^[1]; Abs, Elsa ^[1]; ^[2]; Tao, Feng ^[3]; ^[4]; ^[5]; ^[6]; ^[7]; Bowring, Simon P. K. ^[1]; ^[8]; ^[1]; ^[9]; Friedlingstein, Pierre ^[10]; ^[11]; ^[5]; Holm, Lasse Busk ^[9]; ^[12]; ^[3]; Marmasse, Gaëlle ^[13]; ^[14] more »

Institut Pierre Simon Laplace, Gif‐sur‐Yvette (France). Laboratoire des Sciences du Climat et de l'Environnement; Alternative Energies and Atomic Energy Commission (CEA), Gif sur Yvette (France); Centre National de la Recherche Scientifique (CNRS), Gif sur Yvette (France); Univ. of Versailles Saint-Quentin-en-Yvelines, Gif sur Yvette (France)
Univ. of California, Irvine, CA (United States)
Cornell Univ., Ithaca, NY (United States)
Chinese Academy of Sciences (CAS), Beijing (China)
Stockholm Univ. (Sweden)
Wintergreen Earth Science, Kennebunk, ME (United States)
Ecole Normale Supérieure, Paris (France); Institut Pierre Simon Laplace, Paris (France)
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Aarhus Univ. (Denmark)
Univ. of Exeter, Devon (United Kingdom); Institut Pierre Simon Laplace, Paris (France); Centre National de la Recherche Scientifique (CNRS), Paris (France); Ecole Normale Supérieure, Paris (France); Sorbonne Univ., Paris (France); Ecole Polytechnique, Paris (France)
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Tsinghua Univ., Beijing (China)
Institut Pierre Simon Laplace, Gif‐sur‐Yvette (France). Laboratoire des Sciences du Climat et de l'Environnement; Alternative Energies and Atomic Energy Commission (CEA), Gif sur Yvette (France); Centre National de la Recherche Scientifique (CNRS), Gif sur Yvette (France); Univ. of Versailles Saint-Quentin-en-Yvelines, Gif sur Yvette (France); Ecole Normale Supérieure de Lyon (France)
Sorbonne Univ., Paris (France); Centre National de la Recherche Scientifique (CNRS), Paris (France); Université Paris-Est Créteil (UPEC) (France); Swedish Univ. of Agricultural Sciences, Uppsala (Sweden)
East China Normal Univ. (ECNU), Shanghai (China)
Univ. of Exeter, Devon (United Kingdom)
Commonwealth Scientific and Industrial Research Organisation (CSIRO), Clayton, VIC (Australia)

Microbial carbon use efficiency (CUE) affects the fate and storage of carbon in terrestrial ecosystems, but its global importance remains uncertain. Accurately modeling and predicting CUE on a global scale is challenging due to inconsistencies in measurement techniques and the complex interactions of climatic, edaphic, and biological factors across scales. The link between microbial CUE and soil organic carbon relies on the stabilization of microbial necromass within soil aggregates or its association with minerals, necessitating an integration of microbial and stabilization processes in modeling approaches. In this perspective, we propose a comprehensive framework that integrates diverse data sources, ranging from genomic information to traditional soil carbon assessments, to refine carbon cycle models by incorporating variations in CUE, thereby enhancing our understanding of the microbial contribution to carbon cycling.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)

Sponsoring Organization:: USDOE National Nuclear Security Administration (NNSA); USDOE Laboratory Directed Research and Development (LDRD) Program

Grant/Contract Number:: AC52-07NA27344

OSTI ID:: 2447682

Alternate ID(s):: OSTI ID: 2530964

Report Number(s):: LLNL--JRNL-869469; 1106166

Journal Information:: Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 15; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

References (112)

Toward more realistic projections of soil carbon dynamics by Earth system models: SOIL CARBON MODELING Luo, Yiqi; Ahlström, Anders; Allison, Steven D. Global Biogeochemical Cycles, Vol. 30, Issue 1 https://doi.org/10.1002/2015GB005239	journal	January 2016
Biotic Interactions in Soil are Underestimated Drivers of Microbial Carbon Use Efficiency Iven, Hélène; Walker, Tom W. N.; Anthony, Mark Current Microbiology, Vol. 80, Issue 1 https://doi.org/10.1007/s00284-022-02979-2	journal	December 2022
Differences in substrate use efficiency: impacts of microbial community composition, land use management, and substrate complexity Bölscher, Tobias; Wadsö, Lars; Börjesson, Gunnar Biology and Fertility of Soils, Vol. 52, Issue 4 https://doi.org/10.1007/s00374-016-1097-5	journal	February 2016
Integrating microbial ecology into ecosystem models: challenges and priorities Treseder, Kathleen K.; Balser, Teri C.; Bradford, Mark A. Biogeochemistry, Vol. 109, Issue 1-3 https://doi.org/10.1007/s10533-011-9636-5	journal	September 2011
Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter Geyer, Kevin M.; Kyker-Snowman, Emily; Grandy, A. Stuart Biogeochemistry, Vol. 127, Issue 2-3 https://doi.org/10.1007/s10533-016-0191-y	journal	February 2016
Evaluating soil microbial carbon use efficiency explicitly as a function of cellular processes: implications for measurements and models Hagerty, Shannon B.; Allison, Steven D.; Schimel, Joshua P. Biogeochemistry, Vol. 140, Issue 3 https://doi.org/10.1007/s10533-018-0489-z	journal	August 2018
On maintenance and metabolisms in soil microbial communities Dijkstra, Paul; Martinez, Ayla; Thomas, Scott C. Plant and Soil, Vol. 476, Issue 1-2 https://doi.org/10.1007/s11104-022-05382-9	journal	April 2022
Improving the Performance of Reactive Transport Simulations Using Artificial Neural Networks Demirer, Ersan; Coene, Emilie; Iraola, Aitor Transport in Porous Media, Vol. 149, Issue 1, p. 271-297 https://doi.org/10.1007/s11242-022-01856-7	journal	September 2022
Responses of soil microbial carbon use efficiency to warming: Review and prospects Zhang, Qiufang; Qin, Wenkuan; Feng, Jiguang Soil Ecology Letters, Vol. 4, Issue 4 https://doi.org/10.1007/s42832-022-0137-3	journal	April 2022
Erosion effects on soil microbial carbon use efficiency in the mollisol cropland in northeast China Zhang, Xuebing; Pei, Guangting; Zhang, Tianyu Soil Ecology Letters, Vol. 5, Issue 4 https://doi.org/10.1007/s42832-023-0176-4	journal	April 2023
Protozoan grazing affects estimates of carbon utilization efficiency of the soil microbial community Frey, S. D.; Gupta, V. V. S. R.; Elliott, E. T. Soil Biology and Biochemistry, Vol. 33, Issue 12-13 https://doi.org/10.1016/S0038-0717(01)00101-8	journal	October 2001
Assessing the accumulation efficiency of various microbial carbon components in soils of different minerals Cai, Yue; Ma, Tian; Wang, Yiyun Geoderma, Vol. 407 https://doi.org/10.1016/j.geoderma.2021.115562	journal	February 2022
Seasonal dynamics of soil microbial growth, respiration, biomass, and carbon use efficiency in temperate soils Schnecker, Jörg; Baldaszti, Ludwig; Gündler, Philipp Geoderma, Vol. 440 https://doi.org/10.1016/j.geoderma.2023.116693 116693	journal	December 2023
Distinct Assembly Processes and Microbial Communities Constrain Soil Organic Carbon Formation Anthony, Mark A.; Crowther, Thomas W.; Maynard, Daniel S. One Earth, Vol. 2, Issue 4 https://doi.org/10.1016/j.oneear.2020.03.006	journal	April 2020
Active microorganisms in soil: Critical review of estimation criteria and approaches Blagodatskaya, Evgenia; Kuzyakov, Yakov Soil Biology and Biochemistry, Vol. 67 https://doi.org/10.1016/j.soilbio.2013.08.024	journal	December 2013
Microbial hotspots and hot moments in soil: Concept & review Kuzyakov, Yakov; Blagodatskaya, Evgenia Soil Biology and Biochemistry, Vol. 83 https://doi.org/10.1016/j.soilbio.2015.01.025	journal	April 2015
Microbial carbon use efficiency and biomass turnover times depending on soil depth – Implications for carbon cycling Spohn, Marie; Klaus, Karoline; Wanek, Wolfgang Soil Biology and Biochemistry, Vol. 96 https://doi.org/10.1016/j.soilbio.2016.01.016	journal	May 2016
Soil organic matter quality exerts a stronger control than stoichiometry on microbial substrate use efficiency along a latitudinal transect Takriti, Mounir; Wild, Birgit; Schnecker, Jörg Soil Biology and Biochemistry, Vol. 121 https://doi.org/10.1016/j.soilbio.2018.02.022	journal	June 2018
Role of substrate supply on microbial carbon use efficiency and its role in interpreting soil microbial community-level physiological profiles (CLPP) Jones, D. L.; Hill, P. W.; Smith, A. R. Soil Biology and Biochemistry, Vol. 123 https://doi.org/10.1016/j.soilbio.2018.04.014	journal	August 2018
Clarifying the interpretation of carbon use efficiency in soil through methods comparison Geyer, Kevin M.; Dijkstra, Paul; Sinsabaugh, Robert Soil Biology and Biochemistry, Vol. 128 https://doi.org/10.1016/j.soilbio.2018.09.036	journal	January 2019
Growth explains microbial carbon use efficiency across soils differing in land use and geology Zheng, Qing; Hu, Yuntao; Zhang, Shasha Soil Biology and Biochemistry, Vol. 128 https://doi.org/10.1016/j.soilbio.2018.10.006	journal	January 2019
Microbial growth and carbon use efficiency in soil: Links to fungal-bacterial dominance, SOC-quality and stoichiometry Soares, Margarida; Rousk, Johannes Soil Biology and Biochemistry, Vol. 131 https://doi.org/10.1016/j.soilbio.2019.01.010	journal	April 2019
Testing the dependence of microbial growth and carbon use efficiency on nitrogen availability, pH, and organic matter quality Silva-Sánchez, Alex; Soares, Margarida; Rousk, Johannes Soil Biology and Biochemistry, Vol. 134 https://doi.org/10.1016/j.soilbio.2019.03.008	journal	July 2019
Microbial carbon and nitrogen cycling responses to drought and temperature in differently managed mountain grasslands Fuchslueger, Lucia; Wild, Birgit; Mooshammer, Maria Soil Biology and Biochemistry, Vol. 135 https://doi.org/10.1016/j.soilbio.2019.05.002	journal	August 2019
pH and exchangeable aluminum are major regulators of microbial energy flow and carbon use efficiency in soil microbial communities Jones, Davey L.; Cooledge, Emily C.; Hoyle, Frances C. Soil Biology and Biochemistry, Vol. 138 https://doi.org/10.1016/j.soilbio.2019.107584	journal	November 2019
Evaluation of the 18O-H2O incubation method for measurement of soil microbial carbon use efficiency Qu, Lingrui; Wang, Chao; Bai, Edith Soil Biology and Biochemistry, Vol. 145 https://doi.org/10.1016/j.soilbio.2020.107802	journal	June 2020
A soil microbial model to analyze decoupled microbial growth and respiration during soil drying and rewetting Brangarí, Albert C.; Manzoni, Stefano; Rousk, Johannes Soil Biology and Biochemistry, Vol. 148 https://doi.org/10.1016/j.soilbio.2020.107871	journal	September 2020
The mechanisms underpinning microbial resilience to drying and rewetting – A model analysis Brangarí, Albert C.; Manzoni, Stefano; Rousk, Johannes Soil Biology and Biochemistry, Vol. 162 https://doi.org/10.1016/j.soilbio.2021.108400	journal	November 2021
Improved global-scale predictions of soil carbon stocks with Millennial Version 2 Abramoff, Rose Z.; Guenet, Bertrand; Zhang, Haicheng Soil Biology and Biochemistry, Vol. 164 https://doi.org/10.1016/j.soilbio.2021.108466	journal	January 2022
Estimating microbial carbon use efficiency in soil: Isotope-based and enzyme-based methods measure fundamentally different aspects of microbial resource use Schimel, Joshua; Weintraub, Michael N.; Moorhead, Daryl Soil Biology and Biochemistry, Vol. 169 https://doi.org/10.1016/j.soilbio.2022.108677	journal	June 2022
Liming effects on microbial carbon use efficiency and its potential consequences for soil organic carbon stocks Schroeder, Julia; Dǎmǎtîrcǎ, Claudia; Bölscher, Tobias Soil Biology and Biochemistry, Vol. 191 https://doi.org/10.1016/j.soilbio.2024.109342 109342	journal	April 2024
Microbial metabolic capacity regulates the accrual of mineral-associated organic carbon in subtropical paddy soils Li, Zhe; Duan, Xun; Guo, Xiaobin Soil Biology and Biochemistry, Vol. 195 https://doi.org/10.1016/j.soilbio.2024.109457	journal	August 2024
Compensatory Thermal Adaptation of Soil Microbial Respiration Rates in Global Croplands Ye, Jian‐Sheng; Bradford, Mark A.; Maestre, Fernando T. Global Biogeochemical Cycles, Vol. 34, Issue 6 https://doi.org/10.1029/2019GB006507	journal	May 2020
Global‐Scale Convergence Obscures Inconsistencies in Soil Carbon Change Predicted by Earth System Models Shi, Zheng; Hoffman, Forrest M.; Xu, Min AGU Advances, Vol. 5, Issue 2 https://doi.org/10.1029/2023AV001068	journal	March 2024
Persistence of soil organic matter as an ecosystem property Schmidt, Michael W. I.; Torn, Margaret S.; Abiven, Samuel Nature, Vol. 478, Issue 7367 https://doi.org/10.1038/nature10386	journal	October 2011
Temperature sensitivity of soil respiration rates enhanced by microbial community response Karhu, Kristiina; Auffret, Marc D.; Dungait, Jennifer A. J. Nature, Vol. 513, Issue 7516 https://doi.org/10.1038/nature13604	journal	September 2014
The temperature response of soil microbial efficiency and its feedback to climate Frey, Serita D.; Lee, Juhwan; Melillo, Jerry M. Nature Climate Change, Vol. 3, Issue 4 https://doi.org/10.1038/nclimate1796	journal	January 2013
Global soil carbon projections are improved by modelling microbial processes Wieder, William R.; Bonan, Gordon B.; Allison, Steven D. Nature Climate Change, Vol. 3, Issue 10 https://doi.org/10.1038/nclimate1951	journal	July 2013
Accelerated microbial turnover but constant growth efficiency with warming in soil Hagerty, Shannon B.; van Groenigen, Kees Jan; Allison, Steven D. Nature Climate Change, Vol. 4, Issue 10 https://doi.org/10.1038/nclimate2361	journal	September 2014
Microbe-driven turnover offsets mineral-mediated storage of soil carbon under elevated CO2 Sulman, Benjamin N.; Phillips, Richard P.; Oishi, A. Christopher Nature Climate Change, Vol. 4, Issue 12 https://doi.org/10.1038/nclimate2436	journal	November 2014
Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls Kallenbach, Cynthia M.; Frey, Serita D.; Grandy, A. Stuart Nature Communications, Vol. 7, Issue 1 https://doi.org/10.1038/ncomms13630	journal	November 2016
Future productivity and carbon storage limited by terrestrial nutrient availability Wieder, William R.; Cleveland, Cory C.; Smith, W. Kolby Nature Geoscience, Vol. 8, Issue 6 https://doi.org/10.1038/ngeo2413	journal	April 2015
Soil-carbon response to warming dependent on microbial physiology Allison, Steven D.; Wallenstein, Matthew D.; Bradford, Mark A. Nature Geoscience, Vol. 3, Issue 5 https://doi.org/10.1038/ngeo846	journal	April 2010
The importance of anabolism in microbial control over soil carbon storage Liang, Chao; Schimel, Joshua P.; Jastrow, Julie D. Nature Microbiology, Vol. 2, Issue 8 https://doi.org/10.1038/nmicrobiol.2017.105	journal	July 2017
Embracing the unknown: disentangling the complexities of the soil microbiome Fierer, Noah Nature Reviews Microbiology, Vol. 15, Issue 10 https://doi.org/10.1038/nrmicro.2017.87	journal	August 2017
Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change Malik, Ashish A.; Martiny, Jennifer B. H.; Brodie, Eoin L. The ISME Journal, Vol. 14, Issue 1 https://doi.org/10.1038/s41396-019-0510-0	journal	September 2019
Model structures amplify uncertainty in predicted soil carbon responses to climate change Shi, Zheng; Crowell, Sean; Luo, Yiqi Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-04526-9	journal	June 2018
Land use driven change in soil pH affects microbial carbon cycling processes Malik, Ashish A.; Puissant, Jeremy; Buckeridge, Kate M. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-05980-1	journal	September 2018
Probing the active fraction of soil microbiomes using BONCAT-FACS Couradeau, Estelle; Sasse, Joelle; Goudeau, Danielle Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-10542-0	journal	June 2019
Microbial carbon use efficiency predicted from genome-scale metabolic models Saifuddin, Mustafa; Bhatnagar, Jennifer M.; Segrè, Daniel Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-11488-z	journal	August 2019
Microbial diversity drives carbon use efficiency in a model soil Domeignoz-Horta, Luiz A.; Pold, Grace; Liu, Xiao-Jun Allen Nature Communications, Vol. 11, Issue 1 https://doi.org/10.1038/s41467-020-17502-z	journal	July 2020
Fast-decaying plant litter enhances soil carbon in temperate forests but not through microbial physiological traits Craig, Matthew E.; Geyer, Kevin M.; Beidler, Katilyn V. Nature Communications, Vol. 13, Issue 1 https://doi.org/10.1038/s41467-022-28715-9	journal	March 2022
Global stocks and capacity of mineral-associated soil organic carbon Georgiou, Katerina; Jackson, Robert B.; Vindušková, Olga Nature Communications, Vol. 13, Issue 1 https://doi.org/10.1038/s41467-022-31540-9	journal	July 2022
Intracellular carbon storage by microorganisms is an overlooked pathway of biomass growth Mason-Jones, Kyle; Breidenbach, Andreas; Dyckmans, Jens Nature Communications, Vol. 14, Issue 1 https://doi.org/10.1038/s41467-023-37713-4	journal	April 2023
Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming Tian, Jing; Dungait, Jennifer A. J.; Hou, Ruixing Nature Communications, Vol. 15, Issue 1 https://doi.org/10.1038/s41467-023-44647-4	journal	January 2024
Microbial temperature sensitivity and biomass change explain soil carbon loss with warming Walker, Tom W. N.; Kaiser, Christina; Strasser, Florian Nature Climate Change, Vol. 8, Issue 10 https://doi.org/10.1038/s41558-018-0259-x	journal	September 2018
Imminent loss of climate space for permafrost peatlands in Europe and Western Siberia Fewster, Richard E.; Morris, Paul J.; Ivanovic, Ruza F. Nature Climate Change, Vol. 12, Issue 4 https://doi.org/10.1038/s41558-022-01296-7	journal	March 2022
A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change Song, Jian; Wan, Shiqiang; Piao, Shilong Nature Ecology & Evolution, Vol. 3, Issue 9 https://doi.org/10.1038/s41559-019-0958-3	journal	August 2019
Formation of necromass-derived soil organic carbon determined by microbial death pathways Camenzind, Tessa; Mason-Jones, Kyle; Mansour, India Nature Geoscience, Vol. 16, Issue 2 https://doi.org/10.1038/s41561-022-01100-3	journal	January 2023
Dominance of particulate organic carbon in top mineral soils in cold regions García-Palacios, Pablo; Bradford, Mark A.; Benavente-Ferraces, Iria Nature Geoscience, Vol. 17, Issue 2 https://doi.org/10.1038/s41561-023-01354-5	journal	January 2024
Life history strategies of soil bacterial communities across global terrestrial biomes Piton, Gabin; Allison, Steven D.; Bahram, Mohammad Nature Microbiology, Vol. 8, Issue 11 https://doi.org/10.1038/s41564-023-01465-0	journal	October 2023
Deep learning and process understanding for data-driven Earth system science Reichstein, Markus; Camps-Valls, Gustau; Stevens, Bjorn Nature, Vol. 566, Issue 7743 https://doi.org/10.1038/s41586-019-0912-1	journal	February 2019
Microbial carbon use efficiency promotes global soil carbon storage Tao, Feng; Huang, Yuanyuan; Hungate, Bruce A. Nature, Vol. 618, Issue 7967 https://doi.org/10.1038/s41586-023-06042-3	journal	May 2023
Model uncertainty obscures major driver of soil carbon He, Xianjin; Abramoff, Rose Z.; Abs, Elsa Nature, Vol. 627, Issue 8002 https://doi.org/10.1038/s41586-023-06999-1	journal	March 2024
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS) Dukovski, Ilija; Bajić, Djordje; Chacón, Jeremy M. Nature Protocols, Vol. 16, Issue 11 https://doi.org/10.1038/s41596-021-00593-3	journal	October 2021
Global variation of soil microbial carbon-use efficiency in relation to growth temperature and substrate supply Qiao, Yang; Wang, Jing; Liang, Guopeng Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-42145-6	journal	April 2019
Microbial growth and carbon use efficiency show seasonal responses in a multifactorial climate change experiment Simon, Eva; Canarini, Alberto; Martin, Victoria Communications Biology, Vol. 3, Issue 1 https://doi.org/10.1038/s42003-020-01317-1	journal	October 2020
Large stocks of peatland carbon and nitrogen are vulnerable to permafrost thaw Hugelius, Gustaf; Loisel, Julie; Chadburn, Sarah Proceedings of the National Academy of Sciences, Vol. 117, Issue 34 https://doi.org/10.1073/pnas.1916387117	journal	August 2020
Whole-soil-profile warming does not change microbial carbon use efficiency in surface and deep soils Zhang, Qiufang; Qin, Wenkuan; Feng, Jiguang Proceedings of the National Academy of Sciences, Vol. 120, Issue 32 https://doi.org/10.1073/pnas.2302190120	journal	July 2023
A Generalized Method for Thermodynamic State Analysis of Environmental Systems Kleerebezem, Robbert; Van Loosdrecht, Mark C. M. Critical Reviews in Environmental Science and Technology, Vol. 40, Issue 1 https://doi.org/10.1080/10643380802000974	journal	January 2010
A meta-analysis of the response of soil moisture to experimental warming Xu, Wenfang; Yuan, Wenping; Dong, Wenjie Environmental Research Letters, Vol. 8, Issue 4 https://doi.org/10.1088/1748-9326/8/4/044027	journal	November 2013
Transcriptomic markers of fungal growth, respiration and carbon-use efficiency Hasby, Fahri A.; Barbi, Florian; Manzoni, Stefano FEMS Microbiology Letters, Vol. 368, Issue 15 https://doi.org/10.1093/femsle/fnab100	journal	August 2021
Carbon use efficiency of microbial communities: stoichiometry, methodology and modelling Sinsabaugh, Robert L.; Manzoni, Stefano; Moorhead, Daryl L. Ecology Letters, Vol. 16, Issue 7 https://doi.org/10.1111/ele.12113	journal	April 2013
Microbial community dynamics alleviate stoichiometric constraints during litter decay Kaiser, Christina; Franklin, Oskar; Dieckmann, Ulf Ecology Letters, Vol. 17, Issue 6 https://doi.org/10.1111/ele.12269	journal	March 2014
Fungal interactions reduce carbon use efficiency Maynard, Daniel S.; Crowther, Thomas W.; Bradford, Mark A. Ecology Letters, Vol. 20, Issue 8 https://doi.org/10.1111/ele.12801	journal	July 2017
Optimal metabolic regulation along resource stoichiometry gradients Manzoni, Stefano; Čapek, Petr; Mooshammer, Maria Ecology Letters, Vol. 20, Issue 9 https://doi.org/10.1111/ele.12815	journal	July 2017
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter? Cotrufo, M. Francesca; Wallenstein, Matthew D.; Boot, Claudia M. Global Change Biology, Vol. 19, Issue 4 https://doi.org/10.1111/gcb.12113	journal	February 2013
Model parameterization to represent processes at unresolved scales and changing properties of evolving systems Luo, Yiqi; Schuur, Edward A. G. Global Change Biology, Vol. 26, Issue 3 https://doi.org/10.1111/gcb.14939	journal	January 2020
Microbial dynamics and soil physicochemical properties explain large‐scale variations in soil organic carbon Zhang, Haicheng; Goll, Daniel S.; Wang, Ying‐Ping Global Change Biology https://doi.org/10.1111/gcb.14994	journal	February 2020
Quantifying microbial growth and carbon use efficiency in dry soil environments via ¹⁸ O water vapor equilibration Canarini, Alberto; Wanek, Wolfgang; Watzka, Margarete Global Change Biology, Vol. 26, Issue 9 https://doi.org/10.1111/gcb.15168	journal	June 2020
Thermal adaptation occurs in the respiration and growth of widely distributed bacteria Tian, Weitao; Sun, Huimin; Zhang, Yan Global Change Biology, Vol. 28, Issue 8 https://doi.org/10.1111/gcb.16102	journal	February 2022
Nitrogen addition to soil affects microbial carbon use efficiency: Meta‐analysis of similarities and differences in ¹³C and ¹⁸O approaches Hu, Junxi; Huang, Congde; Zhou, Shixing Global Change Biology, Vol. 28, Issue 16 https://doi.org/10.1111/gcb.16226	journal	May 2022
Subarctic winter warming promotes soil microbial resilience to freeze–thaw cycles and enhances the microbial carbon use efficiency Lí, Jin‐Tao; Hicks, Lettice C.; Brangarí, Albert C. Global Change Biology, Vol. 30, Issue 1 https://doi.org/10.1111/gcb.17040	journal	November 2023
Environmental and stoichiometric controls on microbial carbon-use efficiency in soils: Research review Manzoni, Stefano; Taylor, Philip; Richter, Andreas New Phytologist, Vol. 196, Issue 1 https://doi.org/10.1111/j.1469-8137.2012.04225.x	journal	July 2012
The effect of resource quantity and resource stoichiometry on microbial carbon-use-efficiency: Resource quantity/quality drives microbial C-use-efficiency Keiblinger, Katharina M.; Hall, Edward K.; Wanek, Wolfgang FEMS Microbiology Ecology https://doi.org/10.1111/j.1574-6941.2010.00912.x	journal	June 2010
Model-data synthesis for the next generation of forest free-air CO ₂ enrichment (FACE) experiments Norby, Richard J.; De Kauwe, Martin G.; Domingues, Tomas F. New Phytologist, Vol. 209, Issue 1 https://doi.org/10.1111/nph.13593	journal	August 2015
Soil warming increases the number of growing bacterial taxa but not their growth rates Metze, Dennis; Schnecker, Jörg; de Carlan, Coline Le Noir Science Advances, Vol. 10, Issue 8 https://doi.org/10.1126/sciadv.adk6295	journal	February 2024
Interactions and Self-Organization in the Soil-Microbe Complex Young, I. M. Science, Vol. 304, Issue 5677 https://doi.org/10.1126/science.1097394	journal	June 2004
The global soil community and its influence on biogeochemistry Crowther, T. W.; van den Hoogen, J.; Wan, J. Science, Vol. 365, Issue 6455 https://doi.org/10.1126/science.aav0550	journal	August 2019
Carbon Use Efficiency and Its Temperature Sensitivity Covary in Soil Bacteria Pold, Grace; Domeignoz-Horta, Luiz A.; Morrison, Eric W. mBio, Vol. 11, Issue 1 https://doi.org/10.1128/mBio.02293-19	journal	January 2020
Current status and applications of genome-scale metabolic models Gu, Changdai; Kim, Gi Bae; Kim, Won Jun Genome Biology, Vol. 20, Issue 1 https://doi.org/10.1186/s13059-019-1730-3	journal	June 2019
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind Genome Biology, Vol. 22, Issue 1 https://doi.org/10.1186/s13059-021-02289-z	journal	February 2021
Stoichiometry of microbial carbon use efficiency in soils Sinsabaugh, Robert L.; Turner, Benjamin L.; Talbot, Jennifer M. Ecological Monographs, Vol. 86, Issue 2 https://doi.org/10.1890/15-2110.1	journal	May 2016
Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems Six, J.; Frey, S. D.; Thiet, R. K. Soil Science Society of America Journal, Vol. 70, Issue 2 https://doi.org/10.2136/sssaj2004.0347	journal	January 2006
microTrait: A Toolset for a Trait-Based Representation of Microbial Genomes Karaoz, Ulas; Brodie, Eoin L. Frontiers in Bioinformatics, Vol. 2 https://doi.org/10.3389/fbinf.2022.918853	journal	July 2022
Deep Learning Optimizes Data-Driven Representation of Soil Organic Carbon in Earth System Model Over the Conterminous United States Tao, Feng; Zhou, Zhenghu; Huang, Yuanyuan Frontiers in Big Data, Vol. 3 https://doi.org/10.3389/fdata.2020.00017	journal	June 2020
Modeling adaptation of carbon use efficiency in microbial communities Allison, Steven D. Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00571	journal	October 2014
Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling Malik, Ashish A.; Chowdhury, Somak; Schlager, Veronika Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.01247	journal	August 2016
Flexible Carbon-Use Efficiency across Litter Types and during Decomposition Partly Compensates Nutrient Imbalances—Results from Analytical Stoichiometric Models Manzoni, Stefano Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00661	journal	April 2017
Managing Agroecosystems for Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, and a Path Forward Kallenbach, Cynthia M.; Wallenstein, Matthew D.; Schipanksi, Meagan E. Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01146	journal	May 2019
Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth Chakrawal, Arjun; Calabrese, Salvatore; Herrmann, Anke M. Frontiers in Microbiology, Vol. 13 https://doi.org/10.3389/fmicb.2022.859063	journal	May 2022
Enhancing insights: exploring the information content of calorespirometric ratio in dynamic soil microbial growth processes through calorimetry Yang, Shiyue; Di Lodovico, Eliana; Rupp, Alina Frontiers in Microbiology, Vol. 15 https://doi.org/10.3389/fmicb.2024.1321059	journal	February 2024
Integrating microbial physiology and physio-chemical principles in soils with the MIcrobial-MIneral Carbon Stabilization (MIMICS) model Wieder, W. R.; Grandy, A. S.; Kallenbach, C. M. Biogeosciences, Vol. 11, Issue 14 https://doi.org/10.5194/bg-11-3899-2014	journal	January 2014
Convergent modelling of past soil organic carbon stocks but divergent projections Luo, Z.; Wang, E.; Zheng, H. Biogeosciences, Vol. 12, Issue 14 https://doi.org/10.5194/bg-12-4373-2015	journal	January 2015
Reviews and syntheses: Carbon use efficiency from organisms to ecosystems – definitions, theories, and empirical evidence Manzoni, Stefano; Čapek, Petr; Porada, Philipp Biogeosciences, Vol. 15, Issue 19 https://doi.org/10.5194/bg-15-5929-2018	journal	January 2018
Evaluation of soil carbon simulation in CMIP6 Earth system models Varney, Rebecca M.; Chadburn, Sarah E.; Burke, Eleanor J. Biogeosciences, Vol. 19, Issue 19 https://doi.org/10.5194/bg-19-4671-2022	journal	October 2022
Global Carbon Budget 2023 Friedlingstein, Pierre; O'Sullivan, Michael; Jones, Matthew W. Earth System Science Data, Vol. 15, Issue 12 https://doi.org/10.5194/essd-15-5301-2023	journal	December 2023
A representation of the phosphorus cycle for ORCHIDEE (revision 4520) Goll, Daniel S.; Vuichard, Nicolas; Maignan, Fabienne Geoscientific Model Development, Vol. 10, Issue 10 https://doi.org/10.5194/gmd-10-3745-2017	journal	January 2017
The use of radiocarbon ¹⁴C to constrain carbon dynamics in the soil module of the land surface model ORCHIDEE (SVN r5165) Tifafi, Marwa; Camino-Serrano, Marta; Hatté, Christine Geoscientific Model Development, Vol. 11, Issue 12 https://doi.org/10.5194/gmd-11-4711-2018	journal	January 2018
Modeling the effects of litter stoichiometry and soil mineral N availability on soil organic matter formation using CENTURY-CUE (v1.0) Zhang, Haicheng; Goll, Daniel S.; Manzoni, Stefano Geoscientific Model Development, Vol. 11, Issue 12 https://doi.org/10.5194/gmd-11-4779-2018	journal	January 2018
Representing life in the Earth system with soil microbial functional traits in the MIMICS model Wieder, W. R.; Grandy, A. S.; Kallenbach, C. M. Geoscientific Model Development, Vol. 8, Issue 6 https://doi.org/10.5194/gmd-8-1789-2015	journal	January 2015
Overview of the Coupled Model Intercomparison Project Phase 6 (CMIP6) experimental design and organization Eyring, Veronika; Bony, Sandrine; Meehl, Gerald A. Geoscientific Model Development, Vol. 9, Issue 5 https://doi.org/10.5194/gmd-9-1937-2016	journal	January 2016

Similar Records

Microbial carbon use efficiency promotes global soil carbon storage

Journal Article · Wed May 24 00:00:00 EDT 2023 · Nature (London) · OSTI ID:2212450

Worth More Dead than Alive? Quantifying Necromass Persistence for Terrestrial Carbon Storage

Technical Report · Thu Sep 28 00:00:00 EDT 2023 · OSTI ID:2203947

Related Subjects

54 ENVIRONMENTAL SCIENCES

Emerging multiscale insights on microbial carbon use efficiency in the land carbon cycle

Citation Formats

References (112)

Similar Records

Related Subjects