The Genome Sequence of an Algal Strain of Nannochloropsis QH25

Sanchez, Monica R.; Biondi, Thomas C.; Kunde, Yuliya A.; Eng, Wyatt; Nalley, Jakob O.; Ganuza, Eneko; Hovde, Blake T.; Corcoran, Alina A.; Starkenburg, Shawn R.

doi:10.1128/mra.00921-22

The Genome Sequence of an Algal Strain of Nannochloropsis QH25

Journal Article · Tue Nov 15 00:00:00 EST 2022 · Microbiology Resource Announcements

DOI:https://doi.org/10.1128/mra.00921-22· OSTI ID:2432373

^[1]; Biondi, Thomas C. ^[2]; Kunde, Yuliya A. ^[2]; Eng, Wyatt ^[2]; Nalley, Jakob O. ^[3]; Ganuza, Eneko ^[3]; Hovde, Blake T. ^[2]; Corcoran, Alina A. ^[4]; ^[2]

Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratory
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Qualitas Health, Imperial, TX (United States)
New Mexico Consortium, Los Alamos, NM (United States)

Species of Nannochloropsis are single-celled Stramenopiles commonly used in microalgae-based technologies for the manufacturing of bioproducts. Nannochloropsis oceanica QH25 was isolated from an algal cultivation pond located in Imperial, Texas (USA). We used PacBio continuous long read (CLR) sequencing to produce a highly contiguous 29.34 Mb genome.

Research Organization:: New Mexico Consortium, Los Alamos, NM (United States)

Sponsoring Organization:: USDOE Office of Energy Efficiency and Renewable Energy (EERE), Office of Sustainable Transportation. Bioenergy Technologies Office (BETO)

Grant/Contract Number:: EE0008902

OSTI ID:: 2432373

Journal Information:: Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 12 Vol. 11; ISSN 2576-098X

Publisher:: SSPA - American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (6)

A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformaion of Escherichia coli Hoffman, Charles S.; Winston, Fred Gene, Vol. 57, Issue 2-3 https://doi.org/10.1016/0378-1119(87)90131-4	journal	January 1987
A novel predatory bacterium infecting the eukaryotic alga Nannochloropsis Lee, Philip A.; Martinez, Kalli J. L.; Letcher, Peter M. Algal Research, Vol. 32 https://doi.org/10.1016/j.algal.2018.04.003	journal	June 2018
Fast gapped-read alignment with Bowtie 2 Langmead, Ben; Salzberg, Steven L. Nature Methods, Vol. 9, Issue 4 https://doi.org/10.1038/nmeth.1923	journal	March 2012
Assembly of long, error-prone reads using repeat graphs Kolmogorov, Mikhail; Yuan, Jeffrey; Lin, Yu Nature Biotechnology, Vol. 37, Issue 5 https://doi.org/10.1038/s41587-019-0072-8	journal	April 2019
The Sequence Alignment/Map format and SAMtools Li, H.; Handsaker, B.; Wysoker, A. Bioinformatics, Vol. 25, Issue 16 https://doi.org/10.1093/bioinformatics/btp352	journal	June 2009
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation Koren, Sergey; Walenz, Brian P.; Berlin, Konstantin Genome Research, Vol. 27, Issue 5 https://doi.org/10.1101/gr.215087.116	journal	March 2017

Similar Records

What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen

Journal Article · Wed Mar 11 20:00:00 EDT 2020 · Genome Biology and Evolution · OSTI ID:1629509

Growth, total lipid, and omega-3 fatty acid production by Nannochloropsis spp. cultivated with raw plant substrate

Journal Article · Wed Sep 30 20:00:00 EDT 2020 · Algal Research · OSTI ID:1650143

Related Subjects

59 BASIC BIOLOGICAL SCIENCES

The Genome Sequence of an Algal Strain of Nannochloropsis QH25

Citation Formats

References (6)

Similar Records

Related Subjects