Celebrating 20 Years of Genetic Discoveries in Legume Nodulation and Symbiotic Nitrogen Fixation
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October 2019 |
Nitrogen in crop production: An account of global flows
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June 1999 |
Does a Common Pathway Transduce Symbiotic Signals in Plant–Microbe Interactions?
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February 2016 |
LysM Domain Receptor Kinases Regulating Rhizobial Nod Factor-Induced Infection
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October 2003 |
The Medicago truncatula Lysine Motif-Receptor-Like Kinase Gene Family Includes NFP and New Nodule-Expressed Genes
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July 2006 |
Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants
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March 2013 |
Ca2+-regulated Ca2+ channels with an RCK gating ring control plant symbiotic associations
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August 2019 |
Nuclear membranes control symbiotic calcium signaling of legumes
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August 2011 |
A Putative Ca 2+ and Calmodulin-Dependent Protein Kinase Required for Bacterial and Fungal Symbioses
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February 2004 |
The Rules of Engagement in the Legume-Rhizobial Symbiosis
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December 2011 |
Symbiosis and the social network of higher plants
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February 2013 |
Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals
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July 2015 |
Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula
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October 2016 |
Spontaneous Access to DNA Target Sites in Folded Chromatin Fibers
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June 2008 |
SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors
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February 2012 |
Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells
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January 2014 |
Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression
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April 2017 |
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
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June 2022 |
Transcriptional Responses toward Diffusible Signals from Symbiotic Microbes Reveal MtNFP - and MtDMI3 -Dependent Reprogramming of Host Gene Expression by Arbuscular Mycorrhizal Fungal Lipochitooligosaccharides
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May 2012 |
Rapid Phosphoproteomic and Transcriptomic Changes in the Rhizobia-legume Symbiosis
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June 2012 |
Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development
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August 2019 |
Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany
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April 2013 |
ATX3 , ATX4 , and ATX5 Encode Putative H3K4 Methyltransferases and Are Critical for Plant Development
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May 2017 |
LOB Domain Proteins: Beyond Lateral Organ Boundaries
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February 2016 |
A shared gene drives lateral root development and root nodule symbiosis pathways in Lotus
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November 2019 |
A Novel Positive Regulator of the Early Stages of Root Nodule Symbiosis Identified by Phosphoproteomics
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November 2018 |
The Medicago truncatula CRE1 Cytokinin Receptor Regulates Lateral Root Development and Early Symbiotic Interaction with Sinorhizobium meliloti
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October 2006 |
Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules
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December 2017 |
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
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April 2012 |
Model-based Analysis of ChIP-Seq (MACS)
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January 2008 |
Inferring epigenetic and transcriptional regulation during blood cell development with a mixture of sparse linear models
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June 2012 |
Multitask Learning
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January 1997 |
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
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September 2014 |
Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks
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October 2013 |
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome
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September 2010 |
Ethylene Inhibits the Nod Factor Signal Transduction Pathway of Medicago truncatula
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August 2001 |
Abscisic Acid Coordinates Nod Factor and Cytokinin Signaling during the Regulation of Nodulation in Medicago truncatula
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October 2008 |
Two Direct Targets of Cytokinin Signaling Regulate Symbiotic Nodulation in Medicago truncatula
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September 2012 |
Hormonal control of cell division and elongation along differentiation trajectories in roots
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January 2014 |
An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing
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February 2014 |
A Positive Regulatory Role for LjERF1 in the Nodulation Process Is Revealed by Systematic Analysis of Nodule-Associated Transcription Factors of Lotus japonicus
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June 2008 |
Dynamics of Ethylene Production in Response to Compatible Nod Factor
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November 2017 |
Plant flotillins are required for infection by nitrogen-fixing bacteria
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December 2009 |
Four Genes of Medicago truncatula Controlling Components of a Nod Factor Transduction Pathway
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September 2000 |
New insights into Nod factor biosynthesis: Analyses of chitooligomers and lipo-chitooligomers of Rhizobium sp. IRBG74 mutants
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November 2016 |
Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes
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November 2016 |
A simple and efficient method for isolating RNA from pine trees
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June 1993 |
Near-optimal probabilistic RNA-seq quantification
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April 2016 |
Whole-genome landscape of Medicago truncatula symbiotic genes
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November 2018 |
Differential analysis of RNA-seq incorporating quantification uncertainty
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June 2017 |
Differential expression analysis for sequence count data
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October 2010 |
Fast gapped-read alignment with Bowtie 2
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March 2012 |
Twelve years of SAMtools and BCFtools
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January 2021 |
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
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October 2013 |
Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq
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book
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October 2017 |
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
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March 2018 |
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
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May 2010 |
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
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May 2010 |
BEDTools: a flexible suite of utilities for comparing genomic features
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January 2010 |
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
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January 2014 |
A Positive Regulator of Nodule Organogenesis, NODULE INCEPTION, Acts as a Negative Regulator of Rhizobial Infection in Lotus japonicus
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April 2014 |
A Remote cis -Regulatory Region Is Required for NIN Expression in the Pericycle to Initiate Nodule Primordium Formation in Medicago truncatula
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January 2019 |
Agrobacterium rhizogenes -Transformed Roots of Medicago truncatula for the Study of Nitrogen-Fixing and Endomycorrhizal Symbiotic Associations
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June 2001 |
Salt Stress Enhances Early Symbiotic Gene Expression in Medicago truncatula and Induces a Stress-Specific Set of Rhizobium-Responsive Genes
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August 2021 |
Analysis of the 5′ regulatory region of the gene for δ-aminolevulinic acid synthetase of Rhizobium meliloti
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January 1985 |