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Megahertz pulse trains enable multi-hit serial femtosecond crystallography experiments at X-ray free electron lasers

Journal Article · · Nature Communications
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The European X-ray Free Electron Laser (XFEL) and Linac Coherent Light Source (LCLS) II are extremely intense sources of X-rays capable of generating Serial Femtosecond Crystallography (SFX) data at megahertz (MHz) repetition rates. Previous work has shown that it is possible to use consecutive X-ray pulses to collect diffraction patterns from individual crystals. Here, we exploit the MHz pulse structure of the European XFEL to obtain two complete datasets from the same lysozyme crystal, first hit and the second hit, before it exits the beam. The two datasets, separated by <1 µs, yield up to 2.1 Å resolution structures. Comparisons between the two structures reveal no indications of radiation damage or significant changes within the active site, consistent with the calculated dose estimates. This demonstrates MHz SFX can be used as a tool for tracking sub-microsecond structural changes in individual single crystals, a technique we refer to as multi-hit SFX.

Research Organization:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Organization:
USDOE National Nuclear Security Administration (NNSA)
Grant/Contract Number:
AC52-07NA27344
OSTI ID:
1959536
Report Number(s):
LLNL-JRNL-844538; 1067757
Journal Information:
Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 13; ISSN 2041-1723
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

References (81)

Estimate your dose: RADDOSE-3D: RADDOSE-3D journal November 2017
The primary and secondary acceptors in bacterial photosynthesis: II. The structure of the Fe2+-Q− complex journal January 1999
Quantifying millisecond time-scale exchange in proteins by CPMG relaxation dispersion NMR spectroscopy of side-chain carbonyl groups journal June 2011
Membrane protein dynamics studied by X-ray lasers – or why only time will tell journal August 2019
Recent results in time resolved serial femtosecond crystallography at XFELs journal December 2020
Assignments, Secondary Structure, Global Fold, and Dynamics of Chemotaxis Y Protein Using Three- and Four-Dimensional Heteronuclear (13C,15N) NMR Spectroscopy journal September 1994
Millisecond-timescale motions contribute to the function of the bacterial response regulator protein Spo0F journal July 1999
Potential for biomolecular imaging with femtosecond X-ray pulses journal August 2000
Femtosecond X-ray protein nanocrystallography journal February 2011
Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses journal November 2014
Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography journal February 2014
Liquid explosions induced by X-ray laser pulses journal May 2016
Megahertz data collection from protein microcrystals at an X-ray free-electron laser journal August 2018
Megahertz serial crystallography journal October 2018
Membrane protein megahertz crystallography at the European XFEL journal November 2019
Ultracompact 3D microfluidics for time-resolved structural biology journal January 2020
Author Correction: Membrane protein megahertz crystallography at the European XFEL journal January 2020
Structural dynamics in proteins induced by and probed with X-ray free-electron laser pulses journal April 2020
Segmented flow generator for serial crystallography at the European X-ray free electron laser journal September 2020
MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography journal May 2021
Time-resolved serial femtosecond crystallography at the European XFEL journal November 2019
MHz data collection of a microcrystalline mixture of different jack bean proteins journal April 2019
Radiation Damage in XFEL: Case study from the oxygen-evolving complex of Photosystem II journal November 2016
Evaluation of serial crystallographic structure determination within megahertz pulse trains journal November 2019
Experimental determination of the radiation dose limit for cryocooled protein crystals journal March 2006
Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser journal February 2017
Radiation damage and dose limits in serial synchrotron crystallography at cryo- and room temperatures journal February 2020
Gas dynamic virtual nozzle for generation of microscopic droplet streams journal September 2008
Femtosecond crystallography of membrane proteins in the lipidic cubic phase journal July 2014
Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser journal December 2011
Scaling Laws of an Exploding Liquid Column under an Intense Ultrashort X-Ray Pulse journal August 2019
Generation of Steady Liquid Microthreads and Micron-Sized Monodisperse Sprays in Gas Streams journal January 1998
Phaser crystallographic software journal July 2007
phenix.model_vs_data : a high-level tool for the calculation of crystallographic model and data statistics journal May 2010
CrystFEL : a software suite for snapshot serial crystallography journal March 2012
Low-resolution refinement in the program REFMAC journal August 2011
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
Features and development of Coot journal March 2010
Overview of the CCP 4 suite and current developments journal March 2011
Outrunning free radicals in room-temperature macromolecular crystallography journal June 2012
Crystallographic data processing for free-electron laser sources journal June 2013
The Rossmann Fourier autoindexing algorithm in MOSFLM journal October 1999
A beginner's guide to radiation damage journal February 2009
New methods for indexing multi-lattice diffraction data journal September 2014
Cheetah : software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data journal May 2014
Recent developments in CrystFEL journal March 2016
OnDA : online data analysis and feedback for serial X-ray imaging journal May 2016
FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images journal July 2017
Nanocrystallography measurements of early stage synthetic malaria pigment journal September 2017
RADDOSE-XFEL : femtosecond time-resolved dose estimates for macromolecular X-ray free-electron laser experiments journal February 2020
Bragg coherent diffraction imaging and metrics for radiation damage in protein micro-crystallography journal January 2017
The Karabo distributed control system journal August 2019
Lipidic cubic phase serial millisecond crystallography using synchrotron radiation journal March 2015
Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins journal May 2019
Specific radiation damage is a lesser concern at room temperature journal June 2019
TakeTwo: an indexing algorithm suited to still images with known crystal parameters journal July 2016
Processing serial crystallography data with CrystFEL : a step-by-step guide journal January 2019
Radiation damage in protein crystallography at X-ray free-electron lasers journal January 2019
Microfluidic mixing and jetting devices based on SU8 and glass for time-resolved molecular imaging experiments conference March 2019
X-ray laser–induced electron dynamics observed by femtosecond diffraction from nanocrystals of Buckminsterfullerene journal September 2016
Functional protein dynamics on uncharted time scales detected by nanoparticle-assisted NMR spin relaxation journal August 2019
High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography journal May 2012
Linking Crystallographic Model and Data Quality journal May 2012
Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein journal December 2014
Two-State Allosteric Behavior in a Single-Domain Signaling Protein journal March 2001
Segmented Flow Generator for Serial Crystallography at the European X-Ray Free Electron Laser dataset January 2020
Membrane protein megahertz crystallography at the European XFEL
  • Gisriel, Chris
  • Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); CFEL, European XFEL, DESY, Uppsala University, Heidelberg University https://doi.org/10.11577/1721364
dataset January 2020
MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography
  • Clabbers, Max; Holmes, Susannah
  • Coherent X-ray Imaging Data Bank (Lawrence Berkeley National Laboratory); La Trobe University, Stockholm University SLAC https://doi.org/10.11577/1767965
dataset January 2021
Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography journal May 2018
Entering an era of dynamic structural biology… journal May 2018
X-ray imaging with submicrometer resolution employing transparent luminescent screens journal January 1998
Time-resolved protein nanocrystallography using an X-ray free-electron laser journal January 2012
Initial observations of the femtosecond timing jitter at the European XFEL journal January 2019
Decipher the Mechanisms of Protein Conformational Changes Induced by Nucleotide Binding through Free-Energy Landscape Analysis: ATP Binding to Hsp70 journal December 2013
First Experiments in Structural Biology at the European X-ray Free-Electron Laser journal May 2020
Bacterial Colonization and Proliferation in Furcal Perforations Repaired by Different Materials: A Confocal Laser Scanning Microscopy Study journal April 2021
Analysis of Multi-Hit Crystals in Serial Synchrotron Crystallography Experiments Using High-Viscosity Injectors journal January 2021
The Influence of Photoelectron Escape in Radiation Damage Simulations of Protein Micro-Crystallography journal June 2018
Time-Resolved Macromolecular Crystallography at Pulsed X-ray Sources journal March 2019
The XFEL Protein Crystallography: Developments and Perspectives journal July 2019
The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser journal March 2020

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