Global Analysis of Chlorella variabilis NC64A mRNA Profiles during the Early Phase of Paramecium bursaria Chlorella Virus-1 Infection

Rowe, Janet M.; Jeanniard, Adrien; Gurnon, James R.; Xia, Yuannan; Dunigan, David D.; Van Etten, James L.; Blanc, Guillaume

doi:10.1371/journal.pone.0090988

Global Analysis of Chlorella variabilis NC64A mRNA Profiles during the Early Phase of Paramecium bursaria Chlorella Virus-1 Infection

Journal Article · Fri Mar 07 00:00:00 EST 2014 · PLoS ONE

DOI:https://doi.org/10.1371/journal.pone.0090988· OSTI ID:1904799

Rowe, Janet M. ^[1]; Jeanniard, Adrien ^[2]; Gurnon, James R. ^[3]; Xia, Yuannan ^[3]; Dunigan, David D. ^[3]; Van Etten, James L. ^[3]; Blanc, Guillaume ^[4]

Univ. of Nebraska, Lincoln, NE (United States); Univ. of California, Irvine, CA (United States); Aix-Marseille Univ., Marseille (France)
Univ. of Nebraska, Lincoln, NE (United States); Aix-Marseille Univ., Marseille (France)
Univ. of Nebraska, Lincoln, NE (United States)
Aix-Marseille Univ., Marseille (France)

The PBCV-1/Chlorella variabilis NC64A system is a model for studies on interactions between viruses and algae. Here we present the first global analyses of algal host transcripts during the early stages of infection, prior to virus replication. During the course of the experiment stretching over 1 hour, about a third of the host genes displayed significant changes in normalized mRNA abundance that either increased or decreased compared to uninfected levels. The population of genes with significant transcriptional changes gradually increased until stabilizing at 40 minutes post infection. Functional categories including cytoplasmic ribosomal proteins, jasmonic acid biosynthesis and anaphase promoting complex/cyclosomes had a significant excess in upregulated genes, whereas spliceosomal snRNP complexes and the shikimate pathway had significantly more down-regulated genes, suggesting that these pathways were activated or shut-down in response to the virus infection. Lastly, we examined the expression of C. varibilis RNA polymerase subunits, as PBCV-1 transcription depends on host RNA polymerases. Two subunits were up-regulated, RPB10 and RPC34, suggesting that they may function to support virus transcription. These results highlight genes and pathways, as well as overall trends, for further refinement of our understanding of the changes that take place during the early stages of viral infection.

View Accepted Manuscript (DOE)

Research Organization:: Univ. of California, San Diego, CA (United States)

Sponsoring Organization:: French Ministry of Research; National Center for Research Resources; National Institute of Allergy and Infectious Diseases (NIAID); National Science Foundation (NSF); USDOE Office of Energy Efficiency and Renewable Energy (EERE)

Grant/Contract Number:: EE0003142

OSTI ID:: 1904799

Journal Information:: PLoS ONE, Journal Name: PLoS ONE Journal Issue: 3 Vol. 9; ISSN 1932-6203

Publisher:: Public Library of ScienceCopyright Statement

Country of Publication:: United States

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
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Global Analysis of Chlorella variabilis NC64A mRNA Profiles during the Early Phase of Paramecium bursaria Chlorella Virus-1 Infection

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