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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.4998989· OSTI ID:1904078
 [1];  [2];  [3];  [4];  [5];  [6];  [7];  [2];  [8];  [9];  [10];  [11];  [12];  [2];  [13];  [14];  [15];  [16];  [17];  [2] more »;  [18];  [2];  [2];  [18];  [19];  [2];  [2] « less
  1. Univ. of Hawaii, Honolulu, HI (United States); Univ. of Georgia, Athens, GA (United States); OSTI
  2. Univ. of Hawaii, Honolulu, HI (United States)
  3. Univ. of Hawaii, Honolulu, HI (United States); Univ. of Rhode Island, Narragansett, RI (United States)
  4. Univ. of Hawaii, Honolulu, HI (United States); Univ. of Washington, Seattle, WA (United States)
  5. Univ. of Georgia, Athens, GA (United States)
  6. Univ. of Hawaii, Honolulu, HI (United States); Marine Biological Laboratory, Woods Hole, MA (United States)
  7. Univ. of Hawaii, Honolulu, HI (United States); Cornell Univ., Ithaca, NY (United States)
  8. Univ. of Hawaii, Honolulu, HI (United States); Observatoire Oceanologique de Villefranche (France)
  9. Univ. of Hawaii, Honolulu, HI (United States); University of Magdalena (Colombia)
  10. Univ. of Hawaii, Honolulu, HI (United States); Max Plank Institute for Marine Microbiology (Germany)
  11. Univ. of Hawaii, Honolulu, HI (United States); Brown Univ., Providence, RI (United States)
  12. Univ. of Hawaii, Honolulu, HI (United States); Univ. of Chicago, IL (United States)
  13. Univ. of Hawaii, Honolulu, HI (United States); University of Massachusetts, Dartmouth, MA (United States)
  14. Univ. of Hawaii, Honolulu, HI (United States); Univ. of California, Irvine, CA (United States)
  15. Univ. of Hawaii, Honolulu, HI (United States); Univ. of California, Santa Barbara, CA (United States)
  16. Univ. of Hawaii, Honolulu, HI (United States); Univ. of California, Los Angeles, CA (United States)
  17. Univ. of Hawaii, Honolulu, HI (United States); Univ. of California, Merced, CA (United States)
  18. Univ. of Hawaii, Honolulu, HI (United States); Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)
  19. Univ. of Hawaii, Honolulu, HI (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
+ Show Author Affiliations
Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae. Here we describe the preliminary characteristics of strain HIMB11, including annotation of the draft genome sequence and comparative genomic analysis with other members of the Roseobacter lineage. The 3,098,747 bp draft genome is arranged in 34 contigs and contains 3,183 protein-coding genes and 54 RNA genes. Phylogenomic and 16S rRNA gene analyses indicate that HIMB11 represents a unique sublineage within the Roseobacter clade. Comparison with other publicly available genome sequences from members of the Roseobacter lineage reveals that strain HIMB11 has the genomic potential to utilize a wide variety of energy sources (e.g. organic matter, reduced inorganic sulfur, light, carbon monoxide), while possessing a reduced number of substrate transporters.
Research Organization:
USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
Sponsoring Organization:
Gordon and Betty Moore Foundation; National Science Foundation (NSF); USDOE
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1904078
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 3 Vol. 9; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

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Cited By (7)

Elucidation of glutamine lipid biosynthesis in marine bacteria reveals its importance under phosphorus deplete growth in Rhodobacteraceae journal August 2018
Temporal and spatial dynamics of Bacteria, Archaea and protists in equatorial coastal waters journal November 2019
Expanding the diversity of bacterioplankton isolates and modeling isolation efficacy with large scale dilution-to-extinction cultivation journal June 2020
Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico journal April 2016
Draft genomic sequence of Nereida ignava CECT 5292T, a marine bacterium of the family Rhodobacteraceae journal February 2016
Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 dataset January 2023
The effects of decomposing invasive jellyfish on biogeochemical fluxes and microbial dynamics in an ultra-oligotrophic sea journal November 2020

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Roseobacter
aerobic anoxygenic phototroph
dimethylsulfoniopropionate
marine bacterioplankton