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Title: Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.4297965· OSTI ID:1628667
 [1];  [2];  [1];  [1];  [3];  [4];  [4];  [5];  [6];  [2];  [6];  [1];  [4];  [4];  [3];  [7];  [1]
  1. Leibniz Inst. DSMZ. German Collection of Microorganisms and Cell Cultures, Braunschweig, (Germany)
  2. Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Bioscience Division
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  5. St. Petersburg State Univ. (Russian Federation). Theodosius Dobzhansky Center for Genome Bioinformatics; St. Petersburg State Univ. (Russian Federation). Algorithmic Biology Lab.
  6. Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Bioscience Division; USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  7. Inst. for Chemistyr and Biology of the Marine Environment (ICMB), Oldenburg (Germany)
+ Show Author Affiliations

Leisingera methylohalidivorans Schaefer et al. 2002 emend. Vandecandelaere et al. 2008 is the type species of the genus Leisingera. The genus belongs to the Roseobacter clade (Rhodobacteraceae, Alphaproteobacteria), a widely distributed lineage in marine environments. Leisingera and particularly L. methylohalidivorans strain MB2T is of special interest due to its methylotrophy. Here we describe the complete genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. The 4,650,996 bp long genome with its 4,515 protein-coding and 81 RNA genes consists of three replicons, a single chromosome and two extrachromosomal elements with sizes of 221 kb and 285 kb.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1628667
Journal Information:
Standards in Genomic Sciences, Vol. 9, Issue 1; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

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Cited By (10)

Complete Genome Sequence of Leisingera aquamixtae R2C4, Isolated from a Self-Regenerating Biocathode Consortium journal September 2019
Draft genome sequence of the marine Rhodobacteraceae strain O3.65, cultivated from oil-polluted seawater of the Deepwater Horizon oil spill journal October 2016
Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes journal February 2015
Draft genome of Leisingera aquaemixtae CECT 8399 T , a member of the Roseobacter clade isolated from a junction of fresh and ocean water in Jeju Island, South Korea journal March 2016
Methylotrophs and Methylotroph Populations for Chloromethane Degradation journal January 2019
Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov. journal August 2014
Probing the diversity of chloromethane-degrading bacteria by comparative genomics and isotopic fractionation journal October 2014
Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment journal January 2014
Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis journal October 2013
Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens journal December 2013

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Genetics & Heredity
Microbiology
Methylotrophy
methyl halides
extrachromosomal elements
Alphaproteobacteria
Rhodobacteraceae
Roseobacter clade
aerobe