Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass

Sun, Guangchao; Wase, Nishikant; Shu, Shengqiang; Jenkins, Jerry; Zhou, Bangjun; Torres-Rodríguez, J. Vladimir; Chen, Cindy; Sandor, Laura; Plott, Chris; Yoshinga, Yuko; Daum, Christopher; Qi, Peng; Barry, Kerrie; Lipzen, Anna; Berry, Luke; Pedersen, Connor; Gottilla, Thomas; Foltz, Ashley; Yu, Huihui; O’Malley, Ronan; Zhang, Chi; Devos, Katrien M.; Sigmon, Brandi; Yu, Bin; Obata, Toshihiro; Schmutz, Jeremy; Schnable, James C.

doi:10.1038/s41467-022-35507-8

Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass

Journal Article · Tue Dec 13 00:00:00 EST 2022 · Nature Communications

DOI:https://doi.org/10.1038/s41467-022-35507-8· OSTI ID:1903415

Sun, Guangchao; ; ; ; Zhou, Bangjun; Torres-Rodríguez, J. Vladimir; Chen, Cindy; Sandor, Laura; ; Yoshinga, Yuko; ; Qi, Peng; Barry, Kerrie; Lipzen, Anna; Berry, Luke; Pedersen, Connor; Gottilla, Thomas; Foltz, Ashley; Yu, Huihui; more »

Abstract

A number of crop wild relatives can tolerate extreme stress to a degree outside the range observed in their domesticated relatives. However, it is unclear whether or how the molecular mechanisms employed by these species can be translated to domesticated crops. Paspalum ( Paspalum vaginatum ) is a self-incompatible and multiply stress-tolerant wild relative of maize and sorghum. Here, we describe the sequencing and pseudomolecule level assembly of a vegetatively propagated accession of P. vaginatum . Phylogenetic analysis based on 6,151 single-copy syntenic orthologues conserved in 6 related grass species places paspalum as an outgroup of the maize-sorghum clade. In parallel metabolic experiments, paspalum, but neither maize nor sorghum, exhibits a significant increase in trehalose when grown under nutrient-deficit conditions. Inducing trehalose accumulation in maize, imitating the metabolic phenotype of paspalum, results in autophagy dependent increases in biomass accumulation.

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Research Organization:: USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE; USDOE Office of Science (SC), Basic Energy Sciences (BES)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1903415

Alternate ID(s):: OSTI ID: 2246876

Journal Information:: Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 13; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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