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Complete Genome Sequences of Two Phylogenetically Distinct Nitrospina Strains Isolated from the Atlantic and Pacific Oceans

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/mra.00100-22· OSTI ID:1869674
 [1];  [2];  [3];  [3];  [4]
  1. Univ. of California, Santa Barbara, CA (United States)/; Univ. of Vienna (Austria)
  2. USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  3. Woods Hole Oceanographic Institution, Woods Hole, MA (United States)
  4. Univ. of California, Santa Barbara, CA (United States)
+ Show Author Affiliations
The complete genome sequences of two chemoautotrophic nitrite-oxidizing bacteria of the genus Nitrospina are reported. Nitrospina gracilis strain Nb-211 was isolated from the Atlantic Ocean, and Nitrospina sp. strain Nb-3 was isolated from the Pacific Ocean. We report two highly similar ~3.07-Mbp genome sequences that differ by the presence of ferric iron chelator (siderophore) biosynthesis genes.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
National Science Foundation (NSF); Simons Foundation; USDOE Office of Science (SC)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1869674
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 5 Vol. 11; ISSN 2576-098X
Publisher:
SSPA - American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (12)

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria journal September 2016
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data journal May 2013
The microbial nitrogen-cycling network journal February 2018
Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions journal November 2020
Amazon River enhances diazotrophy and carbon sequestration in the tropical North Atlantic Ocean journal July 2008
Microbial species delineation using whole genome sequences journal July 2015
Real-Time DNA Sequencing from Single Polymerase Molecules journal January 2009
Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. journal January 1994
Versatile and open software for comparing large genomes journal January 2004
Circlator: automated circularization of genome assemblies using long sequencing reads journal December 2015
The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer journal January 2013
Circlator: automated circularization of genome assemblies using long sequencing reads collection January 2015

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