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Draft Genome Sequences of 10 Pseudomonas sp. Isolates from the Active Layer of Permafrost in Ny Ålesund, Svalbard, Norway

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/mra.00201-22· OSTI ID:1867937
 [1];  [2];  [3];  [4];  [2];
  1. Microbiology Department, University of Tennessee, Knoxville, Tennessee, USA, Department of Environmental Science, Aarhus University, Roskilde, Denmark
  2. Microbiology Department, University of Tennessee, Knoxville, Tennessee, USA
  3. Department of Geosciences, Princeton University, Princeton, New Jersey, USA
  4. Center for Environmental Biotechnology, University of Tennessee, Knoxville, Tennessee, USA
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Ten distinct isolates from the genus Pseudomonas were isolated in culture. The genomes of these isolates were sequenced using the Illumina MiSeq platform and assembled in order to provide insight into the metabolic and carbon-degrading potential of bacteria residing in soils at high latitudes.

Research Organization:
Univ. of Tennessee, Knoxville, TN (United States); University of Tennessee, Knoxville, TN (United States)
Sponsoring Organization:
National Science Foundation (NSF); USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
SC0020369
OSTI ID:
1867937
Alternate ID(s):
OSTI ID: 2564978
OSTI ID: 1991899
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 6 Vol. 11; ISSN 2576-098X
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (6)

KBase: The United States Department of Energy Systems Biology Knowledgebase journal July 2018
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing journal May 2012
QUAST: quality assessment tool for genome assemblies journal February 2013
Prokka: rapid prokaryotic genome annotation journal March 2014
Microbial characterisation and Cold-Adapted Predicted Protein (CAPP) database construction from the active layer of Greenland's permafrost journal September 2021
Permafrost Active Layer Microbes From Ny Ålesund, Svalbard (79°N) Show Autotrophic and Heterotrophic Metabolisms With Diverse Carbon-Degrading Enzymes journal February 2022

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Related Subjects

54 ENVIRONMENTAL SCIENCES
59 BASIC BIOLOGICAL SCIENCES
Permafrost Active Layer
Pseudomonas
Svalbard