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Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment

Journal Article · · Genome Announcements
 [1];  [1];  [2];  [3];  [1]
  1. School of the Environment, Florida A&,M University, Tallahassee, Florida, USA
  2. Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada
  3. Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
ABSTRACT

The draft genome sequence of Pseudomonas sp. strain B1, isolated from a contaminated soil, is reported. The genome comprises 6,706,934 bases, 6,059 coding sequences, and 70 RNAs and has a G+C content of 60.3%. A suite of biodegradative genes, many located on genomic islands, were identified from strain B1, further enhancing our understanding of the versatile pseudomonads.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE; USDOE Office of Environmental Management (EM)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1455085
Alternate ID(s):
OSTI ID: 1458355
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 25 Vol. 6; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (9)

History of mercury use and environmental contamination at the Oak Ridge Y-12 Plant journal January 2011
Fast gapped-read alignment with Bowtie 2 journal March 2012
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing journal May 2012
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets journal May 2017
Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis : Responses to metals in journal November 2003
Genomic islands: tools of bacterial horizontal gene transfer and evolution journal March 2009
Pseudomonas genomes: diverse and adaptable journal July 2011
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
Physiological and Comparative Genomic Analysis of Arthrobacter sp. SRS-W-1-2016 Provides Insights on Niche Adaptation for Survival in Uraniferous Soils journal January 2018

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