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Metabolic engineering strategies to produce medium-chain oleochemicals via acyl-ACP:CoA transacylase activity

Journal Article · · Nature Communications
Abstract

Microbial lipid metabolism is an attractive route for producing oleochemicals. The predominant strategy centers on heterologous thioesterases to synthesize desired chain-length fatty acids. To convert acids to oleochemicals (e.g., fatty alcohols, ketones), the narrowed fatty acid pool needs to be reactivated as coenzyme A thioesters at cost of one ATP per reactivation - an expense that could be saved if the acyl-chain was directly transferred from ACP- to CoA-thioester. Here, we demonstrate such an alternative acyl-transferase strategy by heterologous expression of PhaG, an enzyme first identified in Pseudomonads , that transfers 3-hydroxy acyl-chains between acyl-carrier protein and coenzyme A thioester forms for creating polyhydroxyalkanoate monomers. We use it to create a pool of acyl-CoA’s that can be redirected to oleochemical products. Through bioprospecting, mutagenesis, and metabolic engineering, we develop three strains of Escherichia coli capable of producing over 1 g/L of medium-chain free fatty acids, fatty alcohols, and methyl ketones.

Research Organization:
Univ. of Illinois at Urbana-Champaign, IL (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
SC0018420
OSTI ID:
1857884
Alternate ID(s):
OSTI ID: 1902706
Journal Information:
Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 13; ISSN 2041-1723
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (53)

Microbial Polyhydroxyalkanoates and Nonnatural Polyesters journal April 2020
Improving methyl ketone production in Escherichia coli by heterologous expression of NADH-dependent FabG journal March 2018
A mass spectrometry‐based high‐throughput screening method for engineering fatty acid synthases with improved production of medium‐chain fatty acids journal April 2020
Tuning of acyl-ACP thioesterase activity directed for tailored fatty acid synthesis journal February 2018
The role of the acyl-CoA thioesterase “YciA” in the production of (R)-3-hydroxybutyrate by recombinant Escherichia coli journal March 2019
Expression of poly-3-(R)-hydroxyalkanoate (PHA) polymerase and acyl-CoA-transacylase in plastids of transgenic potato leads to the synthesis of a hydrophobic polymer, presumably medium-chain-length PHAs journal September 2004
Microbial Polyhydroxyalkanoates (PHAs): Efficient Replacement of Synthetic Polymers journal June 2020
Association of both enoyl coenzyme A hydratase and 3-hydroxyacyl coenzyme A epimerase with an active site in the amino-terminal domain of the multifunctional fatty acid oxidation protein from Escherichia coli. journal March 1993
Epimerization of 3-hydroxy-4-trans-decenoyl coenzyme A by a dehydration/hydration mechanism catalyzed by the multienzyme complex of fatty acid oxidation from Escherichia coli. journal December 1991
Basic local alignment search tool journal October 1990
Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks journal August 2015
Evaluation of biodiesels from several oilseed sources as environmental friendly contact herbicides journal June 2007
Engineering Escherichia coli to synthesize free fatty acids journal December 2012
Synthetic Biology and Genome-Editing Tools for Improving PHA Metabolic Engineering journal July 2020
Engineering Escherichia coli for production of C12–C14 polyhydroxyalkanoate from glucose journal November 2012
In-silico-driven metabolic engineering of Pseudomonas putida for enhanced production of poly-hydroxyalkanoates journal January 2013
Production of medium chain length fatty alcohols from glucose in Escherichia coli journal November 2013
Metabolic engineering strategies for microbial synthesis of oleochemicals journal May 2015
A systematic optimization of medium chain fatty acid biosynthesis via the reverse beta-oxidation cycle in Escherichia coli journal May 2017
Improving metabolic efficiency of the reverse beta-oxidation cycle by balancing redox cofactor requirement journal November 2017
Anaerobic production of medium-chain fatty alcohols via a β-reduction pathway journal July 2018
Construction of artificial micro-aerobic metabolism for energy- and carbon-efficient synthesis of medium chain fatty acids in Escherichia coli journal May 2019
Revisiting metabolic engineering strategies for microbial synthesis of oleochemicals journal March 2020
Structure-guided reshaping of the acyl binding pocket of ‘TesA thioesterase enhances octanoic acid production in E. coli journal September 2020
Metabolic engineering of β-oxidation to leverage thioesterases for production of 2-heptanone, 2-nonanone and 2-undecanone journal September 2020
Production of 1-octanol in Escherichia coli by a high flux thioesterase route journal September 2020
High titer methyl ketone production with tailored Pseudomonas taiwanensis VLB120 journal November 2020
Mycobacteria Encode Active and Inactive Classes of TesB Fatty-Acyl CoA Thioesterases Revealed through Structural and Functional Analysis journal March 2017
Computational Redesign of Acyl-ACP Thioesterase with Improved Selectivity toward Medium-Chain-Length Fatty Acids journal May 2017
Highly Active C 8 -Acyl-ACP Thioesterase Variant Isolated by a Synthetic Selection Strategy journal July 2018
Histidine-450 Is the Catalytic Residue of l -3-Hydroxyacyl Coenzyme A Dehydrogenase Associated with the Large α-Subunit of the Multienzyme Complex of Fatty Acid Oxidation from Escherichia coli journal January 1996
Cloning and Characterization of the Pseudomonas sp. 61-3 phaG Gene Involved in Polyhydroxyalkanoate Biosynthesis journal November 2000
Production of 3-hydroxydecanoic acid by recombinant Escherichia coli HB101 harboring phaG gene journal February 2004
Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals journal August 2011
Microbial synthesis of medium-chain chemicals from renewables journal December 2017
Enzymatic assembly of DNA molecules up to several hundred kilobases journal April 2009
Accelerating strain phenotyping with desorption electrospray ionization-imaging mass spectrometry and untargeted analysis of intact microbial colonies journal December 2021
A New Metabolic Link between Fatty Acid de Novo Synthesis and Polyhydroxyalkanoic Acid Synthesis : THE journal September 1998
Biochemical Characterization of the Pseudomonas putida 3-Hydroxyacyl ACP:CoA Transacylase, Which Diverts Intermediates of Fatty Acid de Novo Biosynthesis journal November 2002
Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin journal January 2020
Effect of heterologous expression of phaG [( R )-3-hydroxyacyl-ACP-CoA transferase] on polyhydroxyalkanoate accumulation from the aromatic hydrocarbon phenylacetic acid in Pseudomonas species journal March 2007
Functional Screening and In Vitro Analysis Reveal Thioesterases with Enhanced Substrate Specificity Profiles That Improve Short-Chain Fatty Acid Production in Escherichia coli journal November 2013
Engineering Escherichia coli for Biodiesel Production Utilizing a Bacterial Fatty Acid Methyltransferase journal September 2011
Engineering of Bacterial Methyl Ketone Synthesis for Biofuels journal October 2011
Development of a New Strategy for Production of Medium-Chain-Length Polyhydroxyalkanoates by Recombinant Escherichia coli via Inexpensive Non-Fatty Acid Feedstocks journal November 2011
PhaG-Mediated Synthesis of Poly(3-Hydroxyalkanoates) Consisting of Medium-Chain-Length Constituents from Nonrelated Carbon Sources in Recombinant Pseudomonas fragi journal May 2000
Thioesterase II of Escherichia coli Plays an Important Role in 3-Hydroxydecanoic Acid Production journal July 2004
Microbial Type I Fatty Acid Synthases (FAS): Major Players in a Network of Cellular FAS Systems journal September 2004
Evidence that the fadB gene of the fadAB operon of Escherichia coli encodes 3-hydroxyacyl-coenzyme A (CoA) epimerase, delta 3-cis-delta 2-trans-enoyl-CoA isomerase, and enoyl-CoA hydratase in addition to 3-hydroxyacyl-CoA dehydrogenase journal June 1988
Alteration of the specificity and regulation of fatty acid synthesis of Escherichia coli by expression of a plant medium-chain acyl-acyl carrier protein thioesterase. journal December 1994
Mechanisms of Lipid Transport Involved in Organelle Biogenesis in Plant Cells journal November 2009
Production of medium-chain-length polyhydroxyalkanoates by sequential feeding of xylose and octanoic acid in engineered Pseudomonas putida KT2440 journal January 2012
Synthesis of medium-chain-length-polyhydroxyalkanoates in tobacco via chloroplast ge-netic engineering journal January 2005