Machine Learning Interatomic Potentials as Emerging Tools for Materials Science
journal
September 2019
Computer Simulation of Molecular Dynamics: Methodology, Applications, and Perspectives in Chemistry
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September 1990
Empirical force fields for biological macromolecules: Overview and issues
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January 2004
PACKMOL: A package for building initial configurations for molecular dynamics simulations
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October 2009
Water: Many-Body Potential from First Principles (From the Gas to the Liquid Phase)
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January 2020
PLUMED: A portable plugin for free-energy calculations with molecular dynamics
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October 2009
PLUMED 2: New feathers for an old bird
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February 2014
Representing high-dimensional potential-energy surfaces for reactions at surfaces by neural networks
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September 2004
Spectral neighbor analysis method for automated generation of quantum-accurate interatomic potentials
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March 2015
A Roadmap to the Ammonia Economy
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June 2020
New developments in force fields for biomolecular simulations
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April 2018
Polarizable force fields
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April 2001
Getting the Right Answers for the Right Reasons: Toward Predictive Molecular Simulations of Water with Many-Body Potential Energy Functions
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August 2016
Neural Network Potential Energy Surfaces for Small Molecules and Reactions
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October 2020
Four Generations of High-Dimensional Neural Network Potentials
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March 2021
Nature of Alkali Ion–Water Interactions: Insights from Many-Body Representations and Density Functional Theory. II
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April 2020
Highly Accurate Many-Body Potentials for Simulations of N 2 O 5 in Water: Benchmarks, Development, and Validation
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May 2021
Permutationally Invariant Polynomial Expansions with Unrestricted Complexity
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September 2021
Toward Chemical Accuracy in the Description of Ion–Water Interactions through Many-Body Representations. I. Halide–Water Dimer Potential Energy Surfaces
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May 2016
Many-Body Interactions in Ice
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March 2017
Assessing Many-Body Effects of Water Self-Ions. I: OH – (H 2 O) n Clusters
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March 2018
Nature of Halide–Water Interactions: Insights from Many-Body Representations and Density Functional Theory
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March 2019
PhysNet: A Neural Network for Predicting Energies, Forces, Dipole Moments, and Partial Charges
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April 2019
Assessing Many-Body Effects of Water Self-Ions. II: H 3 O + (H 2 O) n Clusters
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July 2019
Automated Fitting of Neural Network Potentials at Coupled Cluster Accuracy: Protonated Water Clusters as Testing Ground
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November 2019
Data-Driven Many-Body Models for Molecular Fluids: CO 2 /H 2 O Mixtures as a Case Study
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March 2020
Isomeric Equilibria, Nuclear Quantum Effects, and Vibrational Spectra of M + (H 2 O) n =1–3 Clusters, with M = Li, Na, K, Rb, and Cs, through Many-Body Representations
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June 2018
Halide Ion Microhydration: Structure, Energetics, and Spectroscopy of Small Halide–Water Clusters
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March 2019
Data-Driven Many-Body Models with Chemical Accuracy for CH 4 /H 2 O Mixtures
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November 2020
Modeling of Peptides with Classical and Novel Machine Learning Force Fields: A Comparison
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April 2021
i-TTM Model for Ab Initio-Based Ion–Water Interaction Potentials. 1. Halide–Water Potential Energy Functions
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November 2015
Exploring Electrostatic Effects on the Hydrogen Bond Network of Liquid Water through Many-Body Molecular Dynamics
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May 2016
Temperature Dependence of the Air/Water Interface Revealed by Polarization Sensitive Sum-Frequency Generation Spectroscopy
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March 2018
Molecular-Level Interpretation of Vibrational Spectra of Ordered Ice Phases
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October 2018
Disentangling Coupling Effects in the Infrared Spectra of Liquid Water
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November 2018
Temperature Dependence of Intramolecular Vibrational Bands in Small Water Clusters
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September 2019
Relationship between Hydrogen-Bonding Motifs and the 1b 1 Splitting in the X-ray Emission Spectrum of Liquid Water
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April 2021
Molecular Origin of the Vibrational Structure of Ice I h
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May 2017
Neat Water–Vapor Interface: Proton Continuum and the Nonresonant Background
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November 2018
Many-Body Effects Determine the Local Hydration Structure of Cs + in Solution
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January 2019
Specific Ion Effects on Hydrogen-Bond Rearrangements in the Halide–Dihydrate Complexes
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May 2019
Charge Model 5: An Extension of Hirshfeld Population Analysis for the Accurate Description of Molecular Interactions in Gaseous and Condensed Phases
Marenich, Aleksandr V.; Jerome, Steven V.; Cramer, Christopher J.
Journal of Chemical Theory and Computation, Vol. 8, Issue 2, p. 527-541
https://doi.org/10.1021/ct200866d
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February 2012
Describing Noncovalent Interactions beyond the Common Approximations: How Accurate Is the “Gold Standard,” CCSD(T) at the Complete Basis Set Limit?
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April 2013
Accuracy and Efficiency of Coupled-Cluster Theory Using Density Fitting/Cholesky Decomposition, Frozen Natural Orbitals, and a t 1 -Transformed Hamiltonian
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May 2013
Development of a “First Principles” Water Potential with Flexible Monomers: Dimer Potential Energy Surface, VRT Spectrum, and Second Virial Coefficient
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November 2013
Development of a “First Principles” Water Potential with Flexible Monomers. II: Trimer Potential Energy Surface, Third Virial Coefficient, and Small Clusters
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March 2014
Development of a “First-Principles” Water Potential with Flexible Monomers. III. Liquid Phase Properties
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July 2014
Infrared and Raman Spectroscopy of Liquid Water through “First-Principles” Many-Body Molecular Dynamics
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February 2015
Permutationally Invariant Polynomial Basis for Molecular Energy Surface Fitting via Monomial Symmetrization
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November 2009
UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations
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December 1992
Dissecting the Molecular Structure of the Air/Water Interface from Quantum Simulations of the Sum-Frequency Generation Spectrum
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March 2016
Monitoring Water Clusters “Melt” Through Vibrational Spectroscopy
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May 2017
A Density-Functional Theory-Based Neural Network Potential for Water Clusters Including van der Waals Corrections
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April 2013
Representation of Intermolecular Potential Functions by Neural Networks
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June 1998
Electron affinity of liquid water
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January 2018
Ion-mediated hydrogen-bond rearrangement through tunnelling in the iodide–dihydrate complex
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March 2019
Machine learning for molecular and materials science
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July 2018
The i-TTM model for ab initio-based ion–water interaction potentials. II. Alkali metal ion–water potential energy functions
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January 2016
ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost
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January 2017
Rotation-tunneling spectrum of the water dimer from instanton theory
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January 2018
Quantum tunnelling pathways of the water pentamer
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January 2020
Low-order many-body interactions determine the local structure of liquid water
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January 2019
Consistent Force Field for Calculations of Conformations, Vibrational Spectra, and Enthalpies of Cycloalkane and n ‐Alkane Molecules
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December 1968
Water Molecule Interactions
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December 1970
Consistent Force Field Calculations. II. Crystal Structures, Sublimation Energies, Molecular and Lattice Vibrations, Molecular Conformations, and Enthalpies of Alkanes
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July 1970
Second Virial Coefficients and the Forces Between Complex Molecules
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April 1942
Exchange-hole dipole moment and the dispersion interaction
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April 2005
A post-Hartree–Fock model of intermolecular interactions
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July 2005
A post-Hartree-Fock model of intermolecular interactions: Inclusion of higher-order corrections
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May 2006
Using neural networks to represent potential surfaces as sums of products
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November 2006
The vibrational proton potential in bulk liquid water and ice
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April 2008
A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
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April 2010
Flexible, ab initio potential, and dipole moment surfaces for water. I. Tests and applications for clusters up to the 22-mer
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March 2011
Interaction energies of large clusters from many-body expansion
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December 2011
An improved simple model for the van der Waals potential based on universal damping functions for the dispersion coefficients
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April 1984
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen
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January 1989
Microscopic structure of low temperature liquid ammonia: A neutron diffraction experiment
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May 1995
Neural network models of potential energy surfaces
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September 1995
Toward reliable density functional methods without adjustable parameters: The PBE0 model
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April 1999
Permutation invariant polynomial neural network approach to fitting potential energy surfaces
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August 2013
Permutation invariant polynomial neural network approach to fitting potential energy surfaces. II. Four-atom systems
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November 2013
Permutation invariant polynomial neural network approach to fitting potential energy surfaces. III. Molecule-surface interactions
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July 2014
On the representation of many-body interactions in water
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September 2015
Communication: Isotopic effects on tunneling motions in the water trimer
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February 2016
Diffusion Monte Carlo studies of MB-pol (H 2 O) 2−6 and (D 2 O) 2−6 clusters: Structures and binding energies
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August 2016
Perspective: Machine learning potentials for atomistic simulations
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November 2016
On the accuracy of the MB-pol many-body potential for water: Interaction energies, vibrational frequencies, and classical thermodynamic and dynamical properties from clusters to liquid water and ice
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November 2016
Quantum mechanical free energy profiles with post-quantization restraints: Binding free energy of the water dimer over a broad range of temperatures
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March 2018
Toward chemical accuracy in the description of ion–water interactions through many-body representations. Alkali-water dimer potential energy surfaces
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October 2017
Vibrational spectra of halide-water dimers: Insights on ion hydration from full-dimensional quantum calculations on many-body potential energy surfaces
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March 2018
Temperature-dependent vibrational spectra and structure of liquid water from classical and quantum simulations with the MB-pol potential energy function
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December 2017
Path integral molecular dynamic simulation of flexible molecular systems in their ground state: Application to the water dimer
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March 2018
Isotopic equilibria in aqueous clusters at low temperatures: Insights from the MB-pol many-body potential
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February 2018
SchNet – A deep learning architecture for molecules and materials
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June 2018
Review of force fields and intermolecular potentials used in atomistic computational materials research
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September 2018
Tunneling splittings from path-integral molecular dynamics using a Langevin thermostat
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June 2018
Permutation invariant polynomial neural network approach to fitting potential energy surfaces. IV. Coupled diabatic potential energy matrices
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October 2018
Full and fragmented permutationally invariant polynomial potential energy surfaces for trans and cis N -methyl acetamide and isomerization saddle points
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August 2019
From ab initio data to high-dimensional potential energy surfaces: A critical overview and assessment of the development of permutationally invariant polynomial potential energy surfaces for single molecules
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November 2019
Machine learning for interatomic potential models
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February 2020
Active learning of many-body configuration space: Application to the Cs + –water MB-nrg potential energy function as a case study
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April 2020
P si4 1.4: Open-source software for high-throughput quantum chemistry
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May 2020
Infrared signatures of isomer selectivity and symmetry breaking in the Cs+(H2O)3 complex using many-body potential energy functions
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July 2020
How good are polarizable and flexible models for water: Insights from a many-body perspective
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August 2020
When do short-range atomistic machine-learning models fall short?
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January 2021
Δ-machine learning for potential energy surfaces: A PIP approach to bring a DFT-based PES to CCSD(T) level of theory
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February 2021
Vapor–liquid equilibrium of water with the MB-pol many-body potential
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June 2021
Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package
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August 2021
Data-driven many-body models enable a quantitative description of chloride hydration from clusters to bulk
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August 2021
Molecular dynamics and protein function
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May 2005
The end of ice I
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November 2019
The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors
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October 1970
Permutationally invariant potential energy surfaces in high dimensionality
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October 2009
Chemical accuracy in modeling halide ion hydration from many-body representations
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January 2019
The open science grid
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July 2007
The Theory of Intermolecular Forces
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January 2013
Fast and Accurate Modeling of Molecular Atomization Energies with Machine Learning
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January 2012
Interatomic potentials for ionic systems with density functional accuracy based on charge densities obtained by a neural network
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July 2015
Atomic cluster expansion for accurate and transferable interatomic potentials
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January 2019
Gaussian Approximation Potentials: The Accuracy of Quantum Mechanics, without the Electrons
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April 2010
Deep Potential Molecular Dynamics: A Scalable Model with the Accuracy of Quantum Mechanics
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April 2018
Electron-Hole Theory of the Effect of Quantum Nuclei on the X-Ray Absorption Spectra of Liquid Water
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September 2018
Orientational Distribution of Free O-H Groups of Interfacial Water is Exponential
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December 2018
Generalized Neural-Network Representation of High-Dimensional Potential-Energy Surfaces
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April 2007
Towards the Modeling of Atomic and Molecular Clusters Energy by Support Vector Regression
Vitek, Ale; Stachon, Martin; Kromer, Pavel
2013 International Conference on Intelligent Networking and Collaborative Systems (INCoS), 2013 5th International Conference on Intelligent Networking and Collaborative Systems
https://doi.org/10.1109/INCoS.2013.26
conference
September 2013
XSEDE: Accelerating Scientific Discovery
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September 2014
Machine learning of accurate energy-conserving molecular force fields
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May 2017
Structure and torsional dynamics of the water octamer from THz laser spectroscopy near 215 μm
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June 2016
Concerted hydrogen-bond breaking by quantum tunneling in the water hexamer prism
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March 2016
Moment Tensor Potentials: A Class of Systematically Improvable Interatomic Potentials
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January 2016
Machine Learning for Molecular Simulation
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April 2020
Permutationally Invariant Potential Energy Surfaces
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April 2018
Computer Simulations of Enzyme Catalysis: Methods, Progress, and Insights
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June 2003
Molecular dynamics simulations and drug discovery
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October 2011