Identification of novel metabolic engineering targets for S-adenosyl-L-methionine production in Saccharomyces cerevisiae via genome-scale engineering

Dong, Chang; Schultz, J. Carl; Liu, Wei; Lian, Jiazhang; Huang, Lei; Xu, Zhinan; Zhao, Huimin

doi:10.1016/j.ymben.2021.03.005

Identification of novel metabolic engineering targets for S-adenosyl-L-methionine production in Saccharomyces cerevisiae via genome-scale engineering

Journal Article · Thu Jul 01 00:00:00 EDT 2021 · Metabolic Engineering

DOI:https://doi.org/10.1016/j.ymben.2021.03.005· OSTI ID:1852565

Dong, Chang ^[1]; Schultz, J. Carl; Liu, Wei; ; Huang, Lei; Xu, Zhinan;

OSTI

Not provided.

Research Organization:: Univ. of Illinois at Urbana-Champaign, IL (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

DOE Contract Number:: SC0018260; SC0018420

OSTI ID:: 1852565

Journal Information:: Metabolic Engineering, Journal Name: Metabolic Engineering Journal Issue: C Vol. 66; ISSN 1096-7176

Publisher:: Elsevier

Country of Publication:: United States

Language:: English

References (40)

Engineered CRISPR/Cas9 system for multiplex genome engineering of polyploid industrial yeast strains Lian, Jiazhang; Bao, Zehua; Hu, Sumeng Biotechnology and Bioengineering, Vol. 115, Issue 6 https://doi.org/10.1002/bit.26569	journal	March 2018
Rapid prototyping of microbial cell factories via genome-scale engineering Si, Tong; Xiao, Han; Zhao, Huimin Biotechnology Advances, Vol. 33, Issue 7 https://doi.org/10.1016/j.biotechadv.2014.11.007	journal	November 2015
Unlocking nature’s biosynthetic potential by directed genome evolution Cao, Mingfeng; Tran, Vinh G.; Zhao, Huimin Current Opinion in Biotechnology, Vol. 66 https://doi.org/10.1016/j.copbio.2020.06.012	journal	December 2020
Synthetic Gene Circuit-Mediated Monitoring of Endogenous Metabolites: Identification of GAL11 as a Novel Multicopy Enhancer of S -Adenosylmethionine Level in Yeast Umeyama, Taichi; Okada, Satoshi; Ito, Takashi ACS Synthetic Biology, Vol. 2, Issue 8 https://doi.org/10.1021/sb300115n	journal	January 2013
Efficient production of S ‐adenosyl‐ l ‐methionine from dl ‐methionine in metabolic engineered Saccharomyces cerevisiae Liu, Wei; Tang, Dandan; Shi, Rui Biotechnology and Bioengineering, Vol. 116, Issue 12 https://doi.org/10.1002/bit.27157	journal	September 2019
HISAT: a fast spliced aligner with low memory requirements Kim, Daehwan; Langmead, Ben; Salzberg, Steven L. Nature Methods, Vol. 12, Issue 4 https://doi.org/10.1038/nmeth.3317	journal	March 2015
S-Adenosylmethionine Lu, Shelly C. The International Journal of Biochemistry & Cell Biology, Vol. 32, Issue 4 https://doi.org/10.1016/S1357-2725(99)00139-9	journal	April 2000
The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae Foury, Françoise; Roganti, Tiziana; Lecrenier, Nicolas FEBS Letters, Vol. 440, Issue 3 https://doi.org/10.1016/S0014-5793(98)01467-7	journal	December 1998
Enhanced co-production of S-adenosylmethionine and glutathione by an ATP-oriented amino acid addition strategy Wang, Yulei; Wang, Dahui; Wei, Gongyuan Bioresource Technology, Vol. 107 https://doi.org/10.1016/j.biortech.2011.12.030	journal	March 2012
Identification of a fungal triacetylfusarinine C siderophore transport gene (TAF1) in Saccharomyces cerevisiae as a member of the major facilitator superfamily Heymann, Petra; Ernst, Joachim F.; Winkelmann, Günther BioMetals, Vol. 12, Issue 4, p. 301-306 https://doi.org/10.1023/A:1009252118050	journal	December 1999
The Saccharomyces cerevisiae orthologue of the human protein phosphatase 4 core regulatory subunit R2 confers resistance to the anticancer drug cisplatin Hastie, C. James; Vazquez-Martin, Cristina; Philp, Amanda FEBS Journal, Vol. 273, Issue 14 https://doi.org/10.1111/j.1742-4658.2006.05336.x	journal	July 2006
RNAi in Budding Yeast Drinnenberg, I. A.; Weinberg, D. E.; Xie, K. T. Science, Vol. 326, Issue 5952 https://doi.org/10.1126/science.1176945	journal	September 2009
Cysteine biosynthesis in Saccharomyces cerevisiae occurs through the transsulfuration pathway which has been built up by enzyme recruitment Cherest, H.; Thomas, D.; Surdin-Kerjan, Y. Journal of Bacteriology, Vol. 175, Issue 17 https://doi.org/10.1128/jb.175.17.5366-5374.1993	journal	September 1993
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data Robinson, M. D.; McCarthy, D. J.; Smyth, G. K. Bioinformatics, Vol. 26, Issue 1 https://doi.org/10.1093/bioinformatics/btp616	journal	November 2009
The Highly Conserved, Coregulated SNO and SNZ Gene Families in Saccharomyces cerevisiae Respond to Nutrient Limitation Padilla, Pamela A.; Fuge, Edwina K.; Crawford, Matthew E. Journal of Bacteriology, Vol. 180, Issue 21 https://doi.org/10.1128/JB.180.21.5718-5726.1998	journal	November 1998
S-adenosylmethionine: Stability and stabilization Matos, Jose R.; Wong, Chi-Huey Bioorganic Chemistry, Vol. 15, Issue 1 https://doi.org/10.1016/0045-2068(87)90008-3	journal	March 1987
Replication Factor C Clamp Loader Subunit Arrangement within the Circular Pentamer and Its Attachment Points to Proliferating Cell Nuclear Antigen Yao, Nina; Coryell, Lee; Zhang, Dan Journal of Biological Chemistry, Vol. 278, Issue 50 https://doi.org/10.1074/jbc.M309206200	journal	December 2003
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update Afgan, Enis; Baker, Dannon; Batut, Bérénice Nucleic Acids Research, Vol. 46, Issue W1 https://doi.org/10.1093/nar/gky379	journal	May 2018
Supply of Methionine During Late-Pregnancy Alters Fecal Microbiota and Metabolome in Neonatal Dairy Calves Without Changes in Daily Feed Intake Elolimy, Ahmed; Alharthi, Abdulrahman; Zeineldin, Mohamed Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.02159	journal	September 2019
Combinatorial metabolic engineering using an orthogonal tri-functional CRISPR system Lian, Jiazhang; HamediRad, Mohammad; Hu, Sumeng Nature Communications, Vol. 8, Issue 1 https://doi.org/10.1038/s41467-017-01695-x	journal	November 2017
Multi-functional genome-wide CRISPR system for high throughput genotype–phenotype mapping Lian, Jiazhang; Schultz, Carl; Cao, Mingfeng Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-13621-4	journal	December 2019
Genome-wide RNAi screen reveals the E3 SUMO-protein ligase gene SIZ1 as a novel determinant of furfural tolerance in Saccharomyces cerevisiae Xiao, Han; Zhao, Huimin Biotechnology for Biofuels, Vol. 7, Issue 1 https://doi.org/10.1186/1754-6834-7-78	journal	January 2014
Construction of plasmids with tunable copy numbers in Saccharomyces cerevisiae and their applications in pathway optimization and multiplex genome integration : Plasmid Copy Number Engineering Lian, Jiazhang; Jin, Run; Zhao, Huimin Biotechnology and Bioengineering, Vol. 113, Issue 11 https://doi.org/10.1002/bit.26004	journal	June 2016
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update Kuleshov, Maxim V.; Jones, Matthew R.; Rouillard, Andrew D. Nucleic Acids Research, Vol. 44, Issue W1 https://doi.org/10.1093/nar/gkw377	journal	May 2016
Precise Editing at DNA Replication Forks Enables Multiplex Genome Engineering in Eukaryotes Barbieri, Edward M.; Muir, Paul; Akhuetie-Oni, Benjamin O. Cell, Vol. 171, Issue 6 https://doi.org/10.1016/j.cell.2017.10.034	journal	November 2017
Siderophore-Iron Uptake in Saccharomyces cerevisiae Yun, Cheol-Won; Tiedeman, John S.; Moore, Robert E. Journal of Biological Chemistry, Vol. 275, Issue 21 https://doi.org/10.1074/jbc.M001456200	journal	May 2000
Modification of biochemical pathways in industrial yeasts Hansen, Jørgen; Kielland-Brandt, Morten C. Journal of Biotechnology, Vol. 49, Issue 1-3 https://doi.org/10.1016/0168-1656(96)01523-4	journal	August 1996
SNZ3 Encodes a PLP Synthase Involved in Thiamine Synthesis in Saccharomyces cerevisiae Paxhia, Michael D.; Downs, Diana M. G3 Genes\|Genomes\|Genetics, Vol. 9, Issue 2 https://doi.org/10.1534/g3.118.200831	journal	February 2019
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale Lecompte, O. Nucleic Acids Research, Vol. 30, Issue 24 https://doi.org/10.1093/nar/gkf693	journal	December 2002
The Improvement of SAM Accumulation by Integrating the Endogenous Methionine Adenosyltransferase Gene SAM2 in Genome of the Industrial Saccharomyces cerevisiae Strain Zhao, Weijun; Shi, Feng; Hang, Baojian Applied Biochemistry and Biotechnology, Vol. 178, Issue 6 https://doi.org/10.1007/s12010-015-1943-1	journal	January 2016
Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision Bao, Zehua; HamediRad, Mohammad; Xue, Pu Nature Biotechnology, Vol. 36, Issue 6 https://doi.org/10.1038/nbt.4132	journal	May 2018
Phosphatase Complex Pph3/Psy2 Is Involved in Regulation of Efficient Non-Homologous End-Joining Pathway in the Yeast Saccharomyces cerevisiae Omidi, Katayoun; Hooshyar, Mohsen; Jessulat, Matthew PLoS ONE, Vol. 9, Issue 1 https://doi.org/10.1371/journal.pone.0087248	journal	January 2014
Recent advances in metabolic engineering of Saccharomyces cerevisiae: New tools and their applications Lian, Jiazhang; Mishra, Shekhar; Zhao, Huimin Metabolic Engineering, Vol. 50 https://doi.org/10.1016/j.ymben.2018.04.011	journal	November 2018
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features Liao, Y.; Smyth, G. K.; Shi, W. Bioinformatics, Vol. 30, Issue 7 https://doi.org/10.1093/bioinformatics/btt656	journal	November 2013
Characterization of the five replication factor C genes of Saccharomyces cerevisiae. Cullmann, G.; Fien, K.; Kobayashi, R. Molecular and Cellular Biology, Vol. 15, Issue 9 https://doi.org/10.1128/MCB.15.9.4661	journal	September 1995
CRISPR–Cas system enables fast and simple genome editing of industrial Saccharomyces cerevisiae strains Stovicek, Vratislav; Borodina, Irina; Forster, Jochen Metabolic Engineering Communications, Vol. 2 https://doi.org/10.1016/j.meteno.2015.03.001	journal	December 2015
The Putative RNA Helicase Dbp6p Functionally Interacts With Rpl3p, Nop8p and the Novel trans -acting Factor Rsa3p During Biogenesis of 60S Ribosomal Subunits in Saccharomyces cerevisiae de la Cruz, Jesús; Lacombe, Thierry; Deloche, Olivier Genetics, Vol. 166, Issue 4 https://doi.org/10.1093/genetics/166.4.1687	journal	April 2004
Inorganic Polyphosphate: A Molecule of Many Functions Kornberg, Arthur; Rao, Narayana N.; Ault-Riché, Dana Annual Review of Biochemistry, Vol. 68, Issue 1 https://doi.org/10.1146/annurev.biochem.68.1.89	journal	June 1999
HIM1, a new yeast Saccharomyces cerevisiae gene playing a role in control of spontaneous and induced mutagenesis Kelberg, Ekaterina P.; Kovaltsova, Svetlana V.; Alekseev, Sergey Yu. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, Vol. 578, Issue 1-2 https://doi.org/10.1016/j.mrfmmm.2005.03.003	journal	October 2005
RNAi-Assisted Genome Evolution in Saccharomyces cerevisiae for Complex Phenotype Engineering Si, Tong; Luo, Yunzi; Bao, Zehua ACS Synthetic Biology, Vol. 4, Issue 3 https://doi.org/10.1021/sb500074a	journal	May 2014

Similar Records

Identification of novel metabolic engineering targets for S-adenosyl-L-methionine production in Saccharomyces cerevisiae via genome-scale engineering

Journal Article · Thu Jul 01 00:00:00 EDT 2021 · Metabolic Engineering · OSTI ID:1818574

Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol

Journal Article · Mon Nov 24 23:00:00 EST 2008 · Microbial Cell Factories · OSTI ID:944533

Metabolic Engineering of Saccharomyces cerevisiae for Caffeine and Theobromine Production

Journal Article · Mon Aug 18 00:00:00 EDT 2014 · PLoS ONE · OSTI ID:1369674

Related Subjects

Biotechnology & Applied Microbiology

Identification of novel metabolic engineering targets for S-adenosyl-L-methionine production in Saccharomyces cerevisiae via genome-scale engineering

Citation Formats

References (40)

Similar Records

Related Subjects