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Temperature-mediated molecular ladder self-assembly employing Diels–Alder cycloaddition

Journal Article · · Polymer Chemistry
DOI:https://doi.org/10.1039/d0py01296c· OSTI ID:1851647

Dynamic covalent self-assembly processes often exhibit poor capacities for error-correction owing to the relatively low connectivity rearrangement rates of dynamic covalent interactions and the common use of reaction conditions where the equilibrium state remains fixed. Here, we report a dynamic covalent self-assembly technique employing temperature, a conventional, externally-applied stimulus, to mediate the hybridization of peptoid oligomers bearing maleimide- and furan-based pendant groups to afford molecular ladders incorporating Diels–Alder adduct-based rungs. By raising or lowing the reaction temperature, this system enables the equilibrium state to be readily varied without altering reagent concentrations. Both triethylamine and the Lewis acidic scandium triflate were examined as candidate reaction catalysts; however, only scandium triflate increased the rate of single strand conversion. Additionally, as the Diels–Alder cycloaddition reaction does not liberate a small molecule, a registry-dependent mass change was effected by employing a base-catalyzed thiol-Michael addition reaction between any un-reacted maleimide pendant groups and a low molecular weight thiol to enable the number of Diels–Alder adduct rungs to be readily determined by mass spectrometry. Finally, by employing a slow temperature ramp from high to low temperature, approximating the thermal cycle employed for nucleic acid hybridization, sequence-selective hybridization between model, tetra-functional precursor strands was demonstrated.

Research Organization:
Univ. of Michigan, Ann Arbor, MI (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
SC0012479
OSTI ID:
1851647
Alternate ID(s):
OSTI ID: 1737854
Journal Information:
Polymer Chemistry, Journal Name: Polymer Chemistry Journal Issue: 48 Vol. 11; ISSN PCOHC2; ISSN 1759-9954
Publisher:
Royal Society of ChemistryCopyright Statement
Country of Publication:
United States
Language:
English

References (33)

Double-Stranded Helical Oligomers Covalently Bridged by Rotary Cyclic Boronate Esters journal March 2017
Nucleic acid junctions and lattices journal November 1982
Formation Mechanisms and Defect Engineering of Imine-Based Porous Organic Cages journal December 2017
Molecular Duplexes with Encoded Sequences and Stabilities journal February 2012
Dynamic Covalent Chemistry Approaches Toward Macrocycles, Molecular Cages, and Polymers journal April 2014
Supramolecular Coordination: Self-Assembly of Finite Two- and Three-Dimensional Ensembles journal November 2011
Efficient method for the preparation of peptoids [oligo(N-substituted glycines)] by submonomer solid-phase synthesis journal December 1992
Covalent Assembly of Molecular Ladders journal April 2007
Connection of Metallamacrocycles via Dynamic Covalent Chemistry: A Versatile Method for the Synthesis of Molecular Cages journal May 2011
Dynamic Covalent Assembly of Peptoid-Based Ladder Oligomers by Vernier Templating journal December 2015
Endo and Exo Diels–Alder Adducts: Temperature-Tunable Building Blocks for Selective Chemical Functionalization journal April 2018
Mechanism of Scandium Ion Catalyzed Diels−Alder Reaction of Anthracenes with Methyl Vinyl Ketone journal April 2005
Supramolecular Polymer Transformation: A Kinetic Study journal October 2014
Rheological and Chemical Analysis of Reverse Gelation in a Covalently Cross-Linked Diels−Alder Polymer Network journal December 2008
Folding DNA to create nanoscale shapes and patterns journal March 2006
Dynamic covalent chemistry enables formation of antimicrobial peptide quaternary assemblies in a completely abiotic manner journal August 2017
Sequence-selective dynamic covalent assembly of information-bearing oligomers journal February 2020
Approaches and challenges in the synthesis of three-dimensional covalent-organic frameworks journal December 2018
Organic cage compounds – from shape-persistency to function journal January 2014
Study of the Diels–Alder and retro-Diels–Alder reaction between furan derivatives and maleimide for the creation of new materials journal January 2015
Dynamic covalent synthesis of aryleneethynylene cages through alkyne metathesis: dimer, tetramer, or interlocked complex? journal January 2016
Long, self-assembled molecular ladders by cooperative dynamic covalent reactions journal January 2017
Aqueous dynamic covalent assembly of molecular ladders and grids bearing boronate ester rungs journal January 2019
Sequence-directed dynamic covalent assembly of base-4-encoded oligomers journal January 2020
Covalent ladder formation becomes kinetically trapped beyond four rungs journal January 2011
DNA origami: a quantum leap for self-assembly of complex structures journal January 2011
Covalent organic frameworks journal January 2012
A unique polymeric nano-carrier for anti-tuberculosis therapy journal January 2012
Self-healing polymers based on thermally reversible Diels–Alder chemistry journal January 2013
Recent advances in dynamic covalent chemistry journal January 2013
Molecular Borromean Rings journal May 2004
Porous, Crystalline, Covalent Organic Frameworks journal November 2005
Supramolecular Materials: Self-Organized Nanostructures journal April 1997

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