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Title: Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants

Journal Article · · Chemical Reviews
 [1]; ORCiD logo [2];  [1]; ORCiD logo [3]; ORCiD logo [4]; ORCiD logo [1]
  1. Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
  2. Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States, Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
  3. National High Magnetic Field Laboratory, Tallahassee, Florida 32310, United States
  4. Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada

Extracellular matrixes (ECMs), such as the cell walls and biofilms, are important for supporting cell integrity and function and regulating intercellular communication. These biomaterials are also of significant interest to the production of biofuels and the development of antimicrobial treatment. Solid-state nuclear magnetic resonance (ssNMR) and magic-angle spinning-dynamic nuclear polarization (MAS-DNP) are uniquely powerful for understanding the conformational structure, dynamical characteristics, and supramolecular assemblies of carbohydrates and other biomolecules in ECMs. This review highlights the recent high-resolution investigations of intact ECMs and native cells in many organisms spanning across plants, bacteria, fungi, and algae. We spotlight the structural principles identified in ECMs, discuss the current technical limitation and underexplored biochemical topics, and point out the promising opportunities enabled by the recent advances of the rapidly evolving ssNMR technology.

Research Organization:
Louisiana State Univ., Baton Rouge, LA (United States); Energy Frontier Research Centers (EFRC) (United States). Center for Lignocellulose Structure and Formation; Pennsylvania State Univ., University Park, PA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Institutes of Health (NIH); Natural Sciences and Engineering Research Council of Canada (NSERC); Fonds de recherche du Québec – Nature et technologies (FRQNT); National Science Foundation (NSF); State of Florida
Grant/Contract Number:
SC0001090; AI149289; RGPIN-2018-06200
OSTI ID:
1834642
Alternate ID(s):
OSTI ID: 1869835; OSTI ID: 1873525
Journal Information:
Chemical Reviews, Journal Name: Chemical Reviews Vol. 122 Journal Issue: 10; ISSN 0009-2665
Publisher:
American Chemical SocietyCopyright Statement
Country of Publication:
United States
Language:
English

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Crystal Structure and Hydrogen-Bonding System in Cellulose Iβ from Synchrotron X-ray and Neutron Fiber Diffraction journal August 2002
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Solid-state NMR spectroscopy journal January 2021
Preparation of Fungal and Plant Materials for Structural Elucidation Using Dynamic Nuclear Polarization Solid-State NMR
  • Kirui, Alex; Dickwella Widanage, Malitha C.; Mentink-Vigier, Frederic
  • Journal of Visualized Experiments, Issue 144 https://doi.org/10.3791/59152
journal January 2019
Dynamic Nuclear Polarization Enhancement of 200 at 21.15 T Enabled by 65 kHz Magic Angle Spinning journal September 2020
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Large Molecular Assembly of Amphotericin B Formed in Ergosterol-Containing Membrane Evidenced by Solid-State NMR of Intramolecular Bridged Derivative journal August 2006
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A Journey from Structure to Function of Bacterial Lipopolysaccharides journal July 2021
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Solid-State NMR Spectroscopic Methods in Chemistry journal September 2002
The Fungal Cell Wall: Structure, Biosynthesis, and Function journal June 2017
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Microstructure of Cell Wall-Associated Melanin in the Human Pathogenic Fungus Cryptococcus neoformans journal March 2005
Solid-state NMR of plant and fungal cell walls: A critical review journal June 2020
The type II secretion system: biogenesis, molecular architecture and mechanism journal April 2012
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Fast MAS 1H–13C correlation NMR for structural investigations of plant cell walls journal September 2019
2H–13C correlation solid-state NMR for investigating dynamics and water accessibilities of proteins and carbohydrates journal July 2017
Selective Signal Detection in Solid-State NMR Using Rotor-Synchronized Dipolar Dephasing for the Analysis of Hemicellulose in Lignocellulosic Biomass journal June 2013
Amphotericin B: 50 Years of Chemistry and Biochemistry journal January 2006
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Structural Characteristics of a Fungal Melanin and a Soil Humic Acid journal January 1986
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Analysis of bacterial biofilms using NMR-based metabolomics journal June 2012
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Persistent Radicals of Self‐assembled Benzophenone bis ‐Urea Macrocycles: Characterization and Application as a Polarizing Agent for Solid‐state DNP MAS Spectroscopy journal May 2017
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Improved magnetization transfer in solid-state NMR with fast magic angle spinning journal February 2009
Cellulose-Pectin Spatial Contacts Are Inherent to Never-Dried Arabidopsis Primary Cell Walls: Evidence from Solid-State Nuclear Magnetic Resonance journal June 2015
Enhanced Softwood Cellulose Accessibility by H 3 PO 4 Pretreatment: High Sugar Yield without Compromising Lignin Integrity journal December 2019
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CHHC and 1H–1H magnetization exchange: Analysis by experimental solid-state NMR and 11-spin density-matrix simulations journal August 2009
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Evaluation of the Structure of the Polysaccharides from Chondria macrocarpa and Ceramium rubrum as Determined by 13C NMR Spectroscopy journal January 2002
Solution-State 2D NMR Spectroscopy of Plant Cell Walls Enabled by a Dimethylsulfoxide- d 6 /1-Ethyl-3-methylimidazolium Acetate Solvent journal March 2013
In-cell Solid-State NMR Studies of Antimicrobial Peptides journal December 2020
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Solid-State NMR Structure Determination from Diagonal-Compensated, Sparsely Nonuniform-Sampled 4D Proton–Proton Restraints journal July 2014
Transcriptome analysis of Pseudomonas aeruginosa biofilm development: anaerobic respiration and iron limitation journal January 2005
Benchtop flow NMR spectroscopy as an online device for the in vivo monitoring of lipid accumulation in microalgae journal November 2019
Effects of Pectin Molecular Weight Changes on the Structure, Dynamics, and Polysaccharide Interactions of Primary Cell Walls of Arabidopsis thaliana : Insights from Solid-State NMR journal August 2017
Rapid Natural-Abundance 2D 13 C- 13 C Correlation Spectroscopy Using Dynamic Nuclear Polarization Enhanced Solid-State NMR and Matrix-Free Sample Preparation journal October 2012
Evolving Views of Pectin Biosynthesis journal April 2013
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Polar Microalgae: New Approaches towards Understanding Adaptations to an Extreme and Changing Environment journal January 2014
Wall Teichoic Acids of Gram-Positive Bacteria journal September 2013
Diatoms—From Cell Wall Biogenesis to Nanotechnology journal December 2008
Effect of ball milling on cellulose nanoparticles structure obtained from garlic and agave waste journal March 2021
In-Cell Solid-State NMR: An Emerging Technique for the Study of Biological Membranes journal December 2015
Echinocandins for the Treatment of Invasive Aspergillosis: from Laboratory to Bedside journal August 2019
Methods for Acquisition and Assignment of Multidimensional High-Resolution Magic Angle Spinning NMR of Whole Cell Bacteria journal August 2005
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Cell Wall Architecture in Yeast: New Structure and New Challenges journal August 1998
Tailoring of Polarizing Agents in the bTurea Series for Cross-Effect Dynamic Nuclear Polarization in Aqueous Media journal March 2016
A Brief History of the Antibiotic Era: Lessons Learned and Challenges for the Future journal January 2010
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A revised solid-state NMR method to assess the crystallinity of cellulose journal September 2019
Wall teichoic acids govern cationic gold nanoparticle interaction with Gram-positive bacterial cell walls journal January 2020
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Cross-polarization dynamics and conformational study of variously sized cellulose crystallites using solid-state 13C NMR journal September 2020
The Xylan of Rhodymenia palmata journal November 1950
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Diatoms response to salinity changes: investigations using single pulse and cross polarisation magic angle spinning 29 Si NMR spectra journal January 2018
Genetic Engineering of Algae for Enhanced Biofuel Production journal February 2010
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Increasing the Sensitivity of Magnetic Resonance Spectroscopy and Imaging journal October 2011
Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy journal November 2007
Whole cell solid-state NMR study of Chlamydomonas reinhardtii microalgae journal January 2018
Unconventional Constituents and Shared Molecular Architecture of the Melanized Cell Wall of C. neoformans and Spore Wall of S. cerevisiae journal December 2020
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Monitoring the Crystalline Structure of Sugar Cane Bagasse in Aqueous Ionic Liquids journal June 2017
Cryptococcus neoformans α Strains Preferentially Disseminate to the Central Nervous System during Coinfection journal August 2005
An overview of the antimicrobial resistance mechanisms of bacteria journal January 2018
Spectral Snapshots of Bacterial Cell-Wall Composition and the Influence of Antibiotics by Whole-Cell NMR journal March 2015
Constant-Time Through-Bond 13 C Correlation Spectroscopy for Assigning Protein Resonances with Solid-State NMR Spectroscopy journal August 2006
Structural and Functional Characterization of the Type Three Secretion System (T3SS) Needle of Pseudomonas aeruginosa journal March 2019
The existence of cellulose and lignin chemical connections in ginkgo traced by 2H-13C dual isotopes journal October 2020
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Arabinosyl Deacetylase Modulates the Arabinoxylan Acetylation Profile and Secondary Wall Formation journal March 2019
Multidimensional solid-state NMR spectroscopy of plant cell walls journal September 2016
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Proton assisted recoupling and protein structure determination journal December 2008
On Mechanisms of Dynamic Nuclear Polarization in Solids journal January 2014
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Solid-state NMR of unlabeled plant cell walls: high-resolution structural analysis without isotopic enrichment journal January 2021
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NMR spectroscopy up to 35.2 T using a series-connected hybrid magnet journal November 2017
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Wide-Angle X-Ray Scattering and Solid-State Nuclear Magnetic Resonance Data Combined to Test Models for Cellulose Microfibrils in Mung Bean Cell Walls journal October 2013
Solid-State 13 C CP/MAS NMR for Alkyl-O-Aryl Bond Determination in Lignin Preparations journal February 2018
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Solid-state NMR spectroscopy identifies three classes of lipids in Cryptococcus neoformans melanized cell walls and whole fungal cells journal August 2020
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The Arabidopsis Cellulose Synthase Complex: A Proposed Hexamer of CESA Trimers in an Equimolar Stoichiometry journal December 2014
Secular Trends in the Epidemiology of Nosocomial Fungal Infections in the United States, 1980-1990 journal May 1993
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Action and resistance mechanisms of antibiotics: A guide for clinicians journal January 2017
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Structural studies of the mix-linked β-(1→3)/β-(1→4)-d-xylans from the cell wall of Palmaria palmata (Rhodophyta) journal November 2003
The biofilm matrix – an immobilized but dynamic microbial environment journal May 2001
Bacterial cell wall biogenesis is mediated by SEDS and PBP polymerase families functioning semi-autonomously journal September 2016
Cellular solid-state nuclear magnetic resonance spectroscopy journal February 2012
Solubility of (1-3)- -d/(1-6)- -D-Glucan in Fungal Walls: Importance of Presumed Linkage between Glucan and Chitin journal July 1981
Phosphorus-31 NMR Studies of Cell Wall-Associated Calcium-Phosphates in Ulva lactuca journal May 1989
Polarization-Enhanced NMR Spectroscopy of Biomolecules in Frozen Solution journal May 1997
Matrix-free dynamic nuclear polarization enables solid-state NMR 13C–13C correlation spectroscopy of proteins at natural isotopic abundance journal January 2013
Fucoidan: Structure and Bioactivity journal August 2008
CPMAS carbon-13 NMR analysis of the crystal transformation induced for Valonia cellulose by annealing at high temperatures journal November 1993
Structure and Function of Bacterial Biofilms by Solid-State NMR journal January 2014
Solid-state dynamic nuclear polarization at 263 GHz: spectrometer design and experimental results journal January 2010

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