Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Non-TZF Protein AtC3H59/ZFWD3 Is Involved in Seed Germination, Seedling Development, and Seed Development, Interacting with PPPDE Family Protein Desi1 in Arabidopsis

Journal Article · · International Journal of Molecular Sciences (Online)
DOI:https://doi.org/10.3390/ijms22094738· OSTI ID:1815937
 [1];  [2];  [3];  [3];  [3];  [4];  [5]
  1. Pusan National Univ., Busan (Korea, Republic of). Inst. of Systems Biology; OSTI
  2. Pusan National Univ., Busan (Korea, Republic of). Inst. of Systems Biology
  3. Pusan National Univ., Busan (Korea, Republic of). Dept. of Integrated Biological Science
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Systems and Engineering Division
  5. Pusan National Univ., Busan (Korea, Republic of). Inst. of Systems Biology; Pusan National Univ., Busan (Korea, Republic of). Dept. of Integrated Biological Science; Pusan National Univ., Busan (Korea, Republic of). Dept. of Molecular Biology
Despite increasing reports on the function of CCCH zinc finger proteins in plant development and stress response, the functions and molecular aspects of many non-tandem CCCH zinc finger (non-TZF) proteins remain uncharacterized. AtC3H59/ZFWD3 is an Arabidopsis non-TZF protein and belongs to the ZFWD subfamily harboring a CCCH zinc finger motif and a WD40 domain. In this study, we characterized the biological and molecular functions of AtC3H59, which is subcellularly localized in the nucleus. The seeds of AtC3H59-overexpressing transgenic plants (OXs) germinated faster than those of wild type (WT), whereas atc3h59 mutant seeds germinated slower than WT seeds. AtC3H59 OX seedlings were larger and heavier than WT seedlings, whereas atc3h59 mutant seedlings were smaller and lighter than WT seedlings. Moreover, AtC3H59 OX seedlings had longer primary root length than WT seedlings, whereas atc3h59 mutant seedlings had shorter primary root length than WT seedlings, owing to altered cell division activity in the root meristem. During seed development, AtC3H59 OXs formed larger and heavier seeds than WT. Using yeast two-hybrid screening, we isolated Desi1, a PPPDE family protein, as an interacting partner of AtC3H59. AtC3H59 and Desi1 interacted via their WD40 domain and C-terminal region, respectively, in the nucleus. Taken together, our results indicate that AtC3H59 has pleiotropic effects on seed germination, seedling development, and seed development, and interacts with Desi1 in the nucleus via its entire WD40 domain. To our knowledge, this is the first report to describe the biological functions of the ZFWD protein and Desi1 in Arabidopsis.
Sponsoring Organization:
Korea government; Ministry of Education; National Research Foundation of Korea (NRF); USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1815937
Journal Information:
International Journal of Molecular Sciences (Online), Journal Name: International Journal of Molecular Sciences (Online) Journal Issue: 9 Vol. 22; ISSN 1422-0067
Publisher:
MDPICopyright Statement
Country of Publication:
United States
Language:
English

References (49)

Human Genome and Diseases:¶WD-repeat proteins: structure characteristics, biological function, and their involvement in human diseases journal December 2001
The zinc finger network of plants journal January 2008
Structure and function of WD40 domain proteins journal March 2011
Molecular cloning and functional analysis of Drosophila TAF110 reveal properties expected of coactivators journal January 1993
A Complex of Cdc4p, Skp1p, and Cdc53p/Cullin Catalyzes Ubiquitination of the Phosphorylated CDK Inhibitor Sic1p journal October 1997
The Ubiquitin Ligase Activity in the DDB2 and CSA Complexes Is Differentially Regulated by the COP9 Signalosome in Response to DNA Damage journal May 2003
ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and seven WD40 repeats journal December 2000
Zinc finger proteins: new insights into structural and functional diversity journal February 2001
The WD repeat: a common architecture for diverse functions journal May 1999
PPPDE1 is a novel deubiquitinase belonging to a cysteine isopeptidase family journal June 2017
Crystal structure of the WD40 domain of human PRPF19 journal November 2017
Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response journal April 2018
Comprehensive analysis of expression profile reveals the ubiquitous distribution of PPPDE peptidase domain 1, a Golgi apparatus component, and its implications in clinical cancer journal July 2013
Structural Basis of UV DNA-Damage Recognition by the DDB1–DDB2 Complex journal December 2008
Regulation of DNA damage response pathways by the cullin-RING ubiquitin ligases journal April 2009
Ribonuclease activity is a common property of Arabidopsis CCCH-containing zinc-finger proteins journal June 2008
The ancient regulatory-protein family of WD-repeat proteins journal September 1994
DeSUMOylating isopeptidase: a second class of SUMO protease journal February 2012
A new class of SUMO proteases journal March 2012
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis journal June 2007
SUMO conjugation to the pattern recognition receptor FLS2 triggers intracellular signalling in plant innate immunity journal December 2018
Sumoylation stabilizes RACK1B and enhance its interaction with RAP2.6 in the abscisic acid response journal March 2017
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana journal December 1998
Repetitive segmental structure of the transducin beta subunit: homology with the CDC4 gene and identification of related mRNAs. journal April 1986
Cytosolic Sec13p complex is required for vesicle formation from the endoplasmic reticulum in vitro. journal February 1993
Arabidopsis C3H14 and C3H15 have overlapping roles in the regulation of secondary wall thickening and anther development journal March 2015
Storage of competent cells for Agrobacterium transformation journal January 1988
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs journal May 2014
EMF1 Interacts with EIP1, EIP6 or EIP9 Involved in the Regulation of Flowering Time in Arabidopsis journal June 2011
Arabidopsis Zinc Finger Proteins AtC3H49/AtTZF3 and AtC3H20/AtTZF2 are Involved in ABA and JA Responses journal February 2012
AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis journal February 2016
StuA is required for cell pattern formation in Aspergillus. journal September 1992
OsTZF1, a CCCH-Tandem Zinc Finger Protein, Confers Delayed Senescence and Stress Tolerance in Rice by Regulating Stress-Related Genes     journal January 2013
Analysis of Cell Division and Elongation Underlying the Developmental Acceleration of Root Growth in Arabidopsis thaliana journal April 1998
HUA1 , a Regulator of Stamen and Carpel Identities in Arabidopsis, Codes for a Nuclear RNA Binding Protein journal October 2001
PEI1 , an Embryo-Specific Zinc Finger Protein Gene Required for Heart-Stage Embryo Formation in Arabidopsis journal March 1998
Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments journal July 2016
A subcellular localization compendium of hydrogen peroxide-induced proteins: Hydrogen peroxide-induced protein compendium journal April 2011
A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures journal July 1962
A non‐tandem CCCH ‐type zinc‐finger protein, IbC3H18, functions as a nuclear transcriptional activator and enhances abiotic stress tolerance in sweet potato journal June 2019
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice journal January 2008
Improved cold tolerance in switchgrass by a novel CCCH-type zinc finger transcription factor gene, PvC3H72, associated with ICE1–CBF–COR regulon and ABA-responsive genes journal September 2019
OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling journal October 2008
Overexpression of PdC3H17 Confers Tolerance to Drought Stress Depending on Its CCCH Domain in Populus journal January 2020
Overexpression of Two CCCH-type Zinc-Finger Protein Genes Leads to Pollen Abortion in Brassica campestris ssp. chinensis journal October 2020
Two Alternative Splicing Variants of AtERF73/HRE1, HRE1α and HRE1β, Have Differential Transactivation Activities in Arabidopsis journal September 2020
Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes journal October 2020
On WD40 proteins: Propelling our knowledge of transcriptional control? journal August 2012
Putative molecular mechanisms underlying tandem CCCH zinc finger protein mediated plant growth, stress, and gene expression responses journal May 2011

Cited By (1)