Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil

Wilhelm, Roland C.; Murphy, Sean J.  L.; Feriancek, Nicole M.; Karasz, David C.; DeRito, Christopher M.; Newman, Jeffrey D.; Buckley, Daniel H.

doi:10.1099/ijsem.0.004029

Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil

Journal Article · Sun Mar 01 04:00:00 EST 2020 · International Journal of Systematic and Evolutionary Microbiology

DOI:https://doi.org/10.1099/ijsem.0.004029· OSTI ID:1802953

^[1]; Murphy, Sean J. L. ^[2]; Feriancek, Nicole M. ^[2]; ^[2]; DeRito, Christopher M. ^[3]; ^[4]; Buckley, Daniel H. ^[2]

School of Integrative Plant Sciences, Bradfield Hall, Cornell University, Ithaca, NY, 14853, USA; OSTI
School of Integrative Plant Sciences, Bradfield Hall, Cornell University, Ithaca, NY, 14853, USA
Department of Microbiology, Wing Hall, Cornell University, Ithaca, NY, 14853, USA
Lycoming College, Williamsport, PA, 17701, USA

RP11^Twas isolated from forest soil following enrichment with 4-hydroxybenzoic acid. Cells of RP11^Tare aerobic, non-sporulating, exhibit swimming motility, and are rods (0.8 µm by 1.4 µm) that often occur as diplobacillus or in short chains (3–4 cells). Optimal growth on minimal media containing 4-hydroxybenzoic acid (µ=0.216 hr^-1) occurred at 30 °C, pH 6.5 or 7.0 and 0% salinity. Comparative chemotaxonomic, genomic and phylogenetic analyses revealed the isolate was distinct from its closest relative type strains identified asParaburkholderia aspalathiLMG 27731^T,Paraburkholderia fungorumLMG 16225^TandParaburkholderia caffeinilyticaCF1^T. Strain RP11^Tis genetically distinct fromP. aspalathi, its closest relative, in terms of 16S rRNA gene sequence similarity (98.7%), genomic average nucleotide identity (94%) andin silicoDNA–DNA hybridization (56.7%±2.8). The composition of fatty acids and substrate utilization pattern differentiated strain RP11^Tfrom its closest relatives, including growth on phthalic acid. Strain RP11^Tencoded the greatest number of aromatic degradation genes of all eleven closely related type strains and uniquely encoded a phthalic acid dioxygenase and paralog of the 3-hydroxybenzoate 4-monooxygenase. The only ubiquinone detected in strain RP11^Twas Q-8, and the major cellular fatty acids were C_16:0, 3OH-C_16:0, C_17:0cyclo, C_19:0cyclo ω8c, and summed feature 8 (C_18:1ω7c/ω6c). On the basis of this polyphasic approach, it was determined that strain RP11^Trepresents a novel species from the genusParaburkholderiafor which the nameParaburkholderia madsenianasp. nov. is proposed. The type strain is RP11^T(=DSM 110123^T=LMG 31517^T).

Research Organization:: Cornell Univ., Ithaca, NY (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

DOE Contract Number:: SC0016364

OSTI ID:: 1802953

Journal Information:: International Journal of Systematic and Evolutionary Microbiology, Journal Name: International Journal of Systematic and Evolutionary Microbiology Journal Issue: 3 Vol. 70; ISSN 1466-5026

Publisher:: International Union of Microbiological Societies

Country of Publication:: United States

Language:: English

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Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
Burkholderia jirisanensis sp. nov., isolated from forest soil Kim, Seil; Gong, Gyeongtaek; Min Woo, Han International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 3 https://doi.org/10.1099/ijsem.0.000867	journal	March 2016

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